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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920120
Clone id YMU001_000133_C05
Library
Length 434
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000133_C05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AACTATATGAGTGATCATTTCTTACATAATAATGGGGTCTGCTACAATTGAGCTACATCT
TTTTGCATGTGCATGCTTGACTAAACCAAAATCCTACAGCTGCCATTGCCAGAAACTATG
TTCATTTCTATGCTCAGGTCCAAAAGAAACCAAATATTTTCAACAGGTTTTGGGACGCTT
CATAGGCTCAACAGTTGTTTCTTTCCCAATCCAAGCCCAAAAATTTCACAAAAGCTAATG
CAAATCCTTACAAAGCAGTCTTGTAGACTCCAAAACAAATTGCAGAGAATACCATTGAAA
AGGGAGCAAGTGACTTGGAAAGCAGCCAACTGTATCAAGGAAACATCCCCTTGAAATATT
TATCATCCTCTTCTTCCTGGCTTGTTGATTGAGTCACACCGTCTCCTGCTGTAGCGGAAG
GTGACAAGCTGGAA
■■Homology search results ■■ -
sp_hit_id Q86BY9
Definition sp|Q86BY9|RIG_DROME Protein rigor mortis OS=Drosophila melanogaster
Align length 24
Score (bit) 31.6
E-value 1.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920120|Adiantum capillus-veneris mRNA, clone:
YMU001_000133_C05.
         (434 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q86BY9|RIG_DROME Protein rigor mortis OS=Drosophila melanogas...    32   1.5  
sp|P31214|S5A2_RAT 3-oxo-5-alpha-steroid 4-dehydrogenase 2 OS=Ra...    31   2.5  
sp|Q8R4V4|CBPZ_MOUSE Carboxypeptidase Z OS=Mus musculus GN=Cpz P...    30   4.3  
sp|Q9HKX5|SYS_THEAC Seryl-tRNA synthetase OS=Thermoplasma acidop...    30   5.6  
sp|Q9N5N8|SURF1_CAEEL SURF1-like protein OS=Caenorhabditis elega...    30   5.6  
sp|Q06194|FA8_MOUSE Coagulation factor VIII OS=Mus musculus GN=F...    30   5.6  
sp|Q6DJR2|WWC2_XENTR Protein WWC2 OS=Xenopus tropicalis GN=wwc2 ...    29   7.3  
sp|Q8BHB7|CP046_MOUSE Uncharacterized protein C16orf46 homolog O...    29   7.3  
sp|P27551|VE1_HPV41 Replication protein E1 OS=Human papillomavir...    29   9.6  
sp|Q03604|RIR1_CAEEL Ribonucleoside-diphosphate reductase large ...    29   9.6  
sp|O08648|M3K4_MOUSE Mitogen-activated protein kinase kinase kin...    29   9.6  

>sp|Q86BY9|RIG_DROME Protein rigor mortis OS=Drosophila melanogaster
           GN=rig PE=1 SV=1
          Length = 1235

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 77  LTKPKSYSCHCQKLCSFLCSGPKE 148
           ++K KS+SCH Q + SF C   KE
Sbjct: 515 ISKDKSHSCHLQDIVSFACDSSKE 538


>sp|P31214|S5A2_RAT 3-oxo-5-alpha-steroid 4-dehydrogenase 2
           OS=Rattus norvegicus GN=Srd5a2 PE=1 SV=1
          Length = 254

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +2

Query: 26  IIMGSATIELHLFACACLTKPKSYSCHCQKLCSFLCSGPKETKYFQQVLGRFIGS 190
           ++ GSAT+        CL KP SY  H + + S +   P    +F Q L  F+ S
Sbjct: 10  VLAGSATLATMGTLILCLGKPASYGKHTESVSSGVPFLPARIAWFLQELPSFVVS 64


>sp|Q8R4V4|CBPZ_MOUSE Carboxypeptidase Z OS=Mus musculus GN=Cpz PE=2
           SV=1
          Length = 654

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +2

Query: 14  IISYIIMGSATIELHLFACACLTKPKSYSCHCQKLCSFLCSGPKE 148
           +I +++ G    +L L  C+ L  P+    H Q+ C  +C G +E
Sbjct: 89  VIHFLLEGQCNPDLRLLGCSVLA-PRCEGGHTQRPCRHVCEGLRE 132


>sp|Q9HKX5|SYS_THEAC Seryl-tRNA synthetase OS=Thermoplasma
           acidophilum GN=serS PE=3 SV=1
          Length = 441

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 12/48 (25%), Positives = 26/48 (54%)
 Frame = +1

Query: 208 NPSPKISQKLMQILTKQSCRLQNKLQRIPLKREQVTWKAANCIKETSP 351
           N      +K ++ +  +   L+NKL++I  +R+++ W   N + E+ P
Sbjct: 66  NGDASAEKKAVEDINARISDLENKLKKIEEERDRILWTIPNLVHESVP 113


>sp|Q9N5N8|SURF1_CAEEL SURF1-like protein OS=Caenorhabditis elegans
           GN=sft-1 PE=2 SV=1
          Length = 323

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
 Frame = +1

Query: 100 LPLPETMFISMLRSKRNQIFSTGF----GTLHRLNSCFFPNPSPKISQKLMQILTKQSCR 267
           +PLP   F  +L   R ++F+T      G+ + +  C F   +P ++ K  QIL   + +
Sbjct: 1   MPLPAAAFARILVVSRQRLFNTRIIHTSGSGYSITQCRFYKTTPCLTHKQSQILDLDAPK 60

Query: 268 LQNKLQRIPLK----REQVTWKAANCIKETSP 351
            +   ++   K    ++ + W   + +  T P
Sbjct: 61  SRENREKDGGKSKKSKKSIKWSTGSVLMLTIP 92


>sp|Q06194|FA8_MOUSE Coagulation factor VIII OS=Mus musculus GN=F8
           PE=2 SV=1
          Length = 2319

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -2

Query: 415 ATAGDGVTQSTSQ-EEEDDKYFKGMFP*YSWLLSKSLAPFS 296
           A+ GD     TSQ E+EDDK F G    Y W + K   P +
Sbjct: 128 ASEGDEYEDQTSQMEKEDDKVFPGESHTYVWQVLKENGPMA 168


>sp|Q6DJR2|WWC2_XENTR Protein WWC2 OS=Xenopus tropicalis GN=wwc2 PE=2
            SV=1
          Length = 1171

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 13/35 (37%), Positives = 25/35 (71%), Gaps = 4/35 (11%)
 Frame = +1

Query: 226  SQKLMQILTKQSCRLQNKLQRIPLK----REQVTW 318
            ++KLM+  +K  CRL+ + Q++PL+    RE++T+
Sbjct: 1121 AEKLMRKASKDVCRLREQSQKVPLQVQSFREKITY 1155


>sp|Q8BHB7|CP046_MOUSE Uncharacterized protein C16orf46 homolog
           OS=Mus musculus PE=2 SV=1
          Length = 409

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 36/122 (29%), Positives = 51/122 (41%), Gaps = 19/122 (15%)
 Frame = +1

Query: 100 LPLPETMFISMLRSKRNQIFSTGFGTLHRLNSCFFPNPSPKISQKLMQIL---TKQSCRL 270
           LP P T   + L S  +Q     +  L + ++ F PNPS       +Q+L    KQSCR 
Sbjct: 292 LPFPPTAAQTHLLSAESQRCCLHWSLLPQKSTVFPPNPSDIHYLATLQVLGQQGKQSCR- 350

Query: 271 QNKLQRIPLKREQVTWKAANCIKETSP*NIYH---------PLLPGLL-------IESHR 402
             +L+    K  + T  A + I E    N  H         PLLP L        + +HR
Sbjct: 351 -TRLKTKDTKPPRTT--AKHIITEAKQQNRPHVLESKVFPKPLLPSLTVSRVVIPVSTHR 407

Query: 403 LL 408
           +L
Sbjct: 408 VL 409


>sp|P27551|VE1_HPV41 Replication protein E1 OS=Human papillomavirus
           type 41 GN=E1 PE=3 SV=1
          Length = 614

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
 Frame = +2

Query: 77  LTKPKSYSCHCQKLCSFLCSGPKET--KYFQQVLGRFIGSTVVSFPIQAQKFHKS*CKSL 250
           + K  ++  H  K  + +  GP +T   YF   L +F+   V+SF      F  S  +  
Sbjct: 423 MCKMHNFLHHRPKKSTLVLCGPSDTGKSYFANGLNKFLDGHVLSFVSNGSHFWLSPLRGA 482

Query: 251 QSSLVDSKT 277
           +  L+D  T
Sbjct: 483 RCCLIDDAT 491


>sp|Q03604|RIR1_CAEEL Ribonucleoside-diphosphate reductase large
           subunit OS=Caenorhabditis elegans GN=rnr-1 PE=1 SV=1
          Length = 788

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +1

Query: 124 ISMLRSKRNQIFSTGFGTLHRLNSCFFPNPSPKISQKLMQILTKQSCRLQNKL 282
           +S L  K N++FS    TLH  +       +P IS +   I+ K + +L + +
Sbjct: 89  VSNLHKKTNKVFSEVMKTLHEFHHPHTGKHAPMISDETWAIIEKNADKLNSAI 141
tr_hit_id Q10WP4
Definition tr|Q10WP4|Q10WP4_TRIEI Putative uncharacterized protein OS=Trichodesmium erythraeum (strain IMS101)
Align length 61
Score (bit) 34.3
E-value 3.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920120|Adiantum capillus-veneris mRNA, clone:
YMU001_000133_C05.
         (434 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q10WP4|Q10WP4_TRIEI Putative uncharacterized protein OS=Trich...    34   3.2  
tr|Q9FRS3|Q9FRS3_ARATH F22O13.10 OS=Arabidopsis thaliana PE=4 SV=1     33   5.4  
tr|B1N6C1|B1N6C1_9RICK Omp-1-18 OS=Ehrlichia ewingii GN=omp118 P...    33   7.1  
tr|B3EJD1|B3EJD1_CHLPB Putative uncharacterized protein OS=Chlor...    33   9.3  
tr|B7R371|B7R371_9EURY Myo-inositol-1-phosphate synthase OS=Ther...    33   9.3  

>tr|Q10WP4|Q10WP4_TRIEI Putative uncharacterized protein
           OS=Trichodesmium erythraeum (strain IMS101) GN=Tery_4338
           PE=4 SV=1
          Length = 717

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +1

Query: 106 LPETMFISMLRSKRN--QIFSTGFGTLHRLNSCFFPNPSPKISQKLMQILTKQSCRLQNK 279
           +PET    M  S +N   I + GF  +H L     PN +PK  Q+ +  LT+ S   QN+
Sbjct: 123 VPETTVKKMFLSLKNFQPIIAEGFAAVHTLQK---PNFNPKTIQEKIDSLTRSSVNRQNR 179

Query: 280 L 282
           L
Sbjct: 180 L 180


>tr|Q9FRS3|Q9FRS3_ARATH F22O13.10 OS=Arabidopsis thaliana PE=4 SV=1
          Length = 1239

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +2

Query: 50  ELHLFACACLTKPKSYSC--HCQKLCSFLCSGPKETKYF 160
           +LHL A  C   P+ YSC  H ++LCS     P  TKYF
Sbjct: 637 DLHLSAAGCRCSPEKYSCLTHVKELCSC----PWVTKYF 671


>tr|B1N6C1|B1N6C1_9RICK Omp-1-18 OS=Ehrlichia ewingii GN=omp118 PE=4
           SV=1
          Length = 282

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 20/63 (31%), Positives = 33/63 (52%)
 Frame = +1

Query: 94  LQLPLPETMFISMLRSKRNQIFSTGFGTLHRLNSCFFPNPSPKISQKLMQILTKQSCRLQ 273
           L LP   +M   M  +  NQ+    FG L++L+  FF N S + +Q L  + T++   L+
Sbjct: 15  LLLPFYASMSFGMSNTLANQVSPISFGVLYKLSHPFFNNFSIEETQILHDVATERVVGLK 74

Query: 274 NKL 282
           + L
Sbjct: 75  HDL 77


>tr|B3EJD1|B3EJD1_CHLPB Putative uncharacterized protein
           OS=Chlorobium phaeobacteroides (strain BS1)
           GN=Cphamn1_1403 PE=3 SV=1
          Length = 210

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +1

Query: 157 FSTGFGTLHRLNSCFFPNPSPKISQKLMQILTKQSCRLQNKLQRIPLKREQVTW 318
           F  GF  +  L +C      P ++Q++   +TK+   + N L +  LKR +V W
Sbjct: 5   FKAGFAVMISLVACIIMAQKPVMTQEMKPAITKEVKPVTNTLIKPELKRTKVMW 58


>tr|B7R371|B7R371_9EURY Myo-inositol-1-phosphate synthase
           OS=Thermococcus sp. AM4 GN=TAM4_329 PE=4 SV=1
          Length = 382

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 15/66 (22%), Positives = 32/66 (48%)
 Frame = +1

Query: 88  KILQLPLPETMFISMLRSKRNQIFSTGFGTLHRLNSCFFPNPSPKISQKLMQILTKQSCR 267
           +I   P    + + ++R  +  +    FGT++ +N+ +  NP PK    + +I+  +  R
Sbjct: 313 RINDSPALAGLLVDLVRLGKIAVEKKAFGTVYEVNAFYMKNPGPKEMHNIPRIIAHEKMR 372

Query: 268 LQNKLQ 285
           +   LQ
Sbjct: 373 IWAGLQ 378