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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920134
Clone id YMU001_000133_D09
Library
Length 366
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000133_D09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ACCTGCAGGTACTCAGGCATCAGTGAGATACCACTCTAGAAGAACTAGAATTCTAACCTT
GTGTCAAGAATTACGGAGCAAGAGACAGTCCCAGGTAGACAGTTTCTATGGGGCGTAGGT
CTCCCAAAGAGTAACGGAGGCGCGCAAAGGTTTCCTCAGGCTGGACGGAAATCAGCCTAC
GAGTGCAAAGGCAGAAGGGAGCTTGACTGCGAGACCTACCAGTCGAGCAGGGACGAAAGT
CGGCCTTAGTGATCCGACGGTTCCAAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTAC
TCTAGGGATAACAGGCTGATCTTCCCCAAGAGTTCACATCGACGGGAAGGTTTGGCACCT
CGATGT
■■Homology search results ■■ -
sp_hit_id P70906
Definition sp|P70906|VLP18_BORHE Variable large protein 18 OS=Borrelia hermsii
Align length 40
Score (bit) 33.1
E-value 0.44
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920134|Adiantum capillus-veneris mRNA, clone:
YMU001_000133_D09.
         (366 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P70906|VLP18_BORHE Variable large protein 18 OS=Borrelia herm...    33   0.44 
sp|Q4U0G1|CLAP1_XENLA CLIP-associating protein 1 OS=Xenopus laev...    31   2.2  
sp|Q9PLI5|Y114_CHLMU Uncharacterized protein TC_0114 OS=Chlamydi...    30   4.9  
sp|Q5F3G0|RHG19_CHICK Rho GTPase-activating protein 19 OS=Gallus...    30   4.9  
sp|P30924|GLGB_SOLTU 1,4-alpha-glucan-branching enzyme OS=Solanu...    30   4.9  
sp|A0PT76|LEXA_MYCUA LexA repressor OS=Mycobacterium ulcerans (s...    29   6.4  
sp|P20814|CP2CD_RAT Cytochrome P450 2C13, male-specific OS=Rattu...    29   6.4  
sp|A0LUZ1|LEXA_ACIC1 LexA repressor OS=Acidothermus cellulolytic...    29   8.4  

>sp|P70906|VLP18_BORHE Variable large protein 18 OS=Borrelia hermsii
           GN=vlp18 PE=3 SV=1
          Length = 360

 Score = 33.1 bits (74), Expect = 0.44
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +2

Query: 164 DGNQPTSAKAEGSLTARPTSRAGTKVGLSDPTVPSGRAVA 283
           +G+Q   A A+G+ TA   ++ GTK  LS+   P   AVA
Sbjct: 250 EGDQALGAAADGTTTAMSFAKGGTKDNLSNANTPKAAAVA 289


>sp|Q4U0G1|CLAP1_XENLA CLIP-associating protein 1 OS=Xenopus laevis
           GN=clasp1 PE=2 SV=1
          Length = 1468

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 161 LDGNQPTSAKAEGSLTARPTSRAGTKVGLSDPTVPSGRA 277
           +DGN+P+SA +  S  A  T+R G  +G +    PS  A
Sbjct: 247 VDGNRPSSASSSASSKAPQTARRGVSLGTARRPGPSSAA 285


>sp|Q9PLI5|Y114_CHLMU Uncharacterized protein TC_0114 OS=Chlamydia
           muridarum GN=TC_0114 PE=4 SV=2
          Length = 122

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 15/39 (38%), Positives = 16/39 (41%)
 Frame = -2

Query: 365 HRGAKPSRRCXXXXXXXXXXXXXXXXXERRPFHLEPSDH 249
           HRGAKP RR                  +RR FH  P DH
Sbjct: 84  HRGAKPPRRYELLVAISLLSPEYLLSVKRRRFHFPPPDH 122


>sp|Q5F3G0|RHG19_CHICK Rho GTPase-activating protein 19 OS=Gallus
           gallus GN=ARHGAP19 PE=2 SV=1
          Length = 495

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +2

Query: 65  QELRSKRQSQVDSFYGA*VSQRVTEARKGFLRLDGNQPTSAK 190
           Q L+S+++S++DS +     QR  EA +   R   N P SAK
Sbjct: 342 QPLKSQKRSRLDSCHQEETQQRTEEALRELFRHVHNMPDSAK 383


>sp|P30924|GLGB_SOLTU 1,4-alpha-glucan-branching enzyme OS=Solanum
           tuberosum GN=SBE1 PE=2 SV=2
          Length = 861

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +2

Query: 44  TRILTLCQELRSKRQSQVDSFYGA*VSQRVTEARK 148
           T ++  CQ+L+  RQ+ V S+Y   +S+RVT   K
Sbjct: 776 TELMNACQKLKITRQTFVVSYYQQPISRRVTRNLK 810


>sp|A0PT76|LEXA_MYCUA LexA repressor OS=Mycobacterium ulcerans
           (strain Agy99) GN=lexA PE=3 SV=1
          Length = 244

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = +2

Query: 134 TEARKGFLRLDGNQPTSAKAEG---SLTARPTSRAGTKVGLSDPT 259
           T  RKG+LR D N+P +    G   ++TA P +       L +PT
Sbjct: 79  TLERKGYLRRDPNRPRAVDVRGADDTVTAAPVTDVAGSDALPEPT 123


>sp|P20814|CP2CD_RAT Cytochrome P450 2C13, male-specific OS=Rattus
           norvegicus GN=Cyp2c13 PE=1 SV=1
          Length = 490

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 155 GNLCAPPLLFGRPTPHRNCLPGTVSCSVILDTRLEF 48
           G+ C P  + G       C PG V CS+IL  R ++
Sbjct: 161 GSPCDPQFIMG-------CAPGNVICSIILQNRFDY 189


>sp|A0LUZ1|LEXA_ACIC1 LexA repressor OS=Acidothermus cellulolyticus
           (strain ATCC 43068 / 11B) GN=lexA PE=3 SV=1
          Length = 275

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 143 RKGFLRLDGNQPTSAKAEGSLTARPTSRAG 232
           RKGFLR D N+P + +   + +A P + AG
Sbjct: 97  RKGFLRRDPNRPRAVEIRSAESAVPDASAG 126
tr_hit_id A0Q208
Definition tr|A0Q208|A0Q208_CLONN Putative uncharacterized protein OS=Clostridium novyi (strain NT)
Align length 94
Score (bit) 138.0
E-value 2.0e-31
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920134|Adiantum capillus-veneris mRNA, clone:
YMU001_000133_D09.
         (366 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A0Q208|A0Q208_CLONN Putative uncharacterized protein OS=Clost...   138   2e-31
tr|A0PXN7|A0PXN7_CLONN Putative uncharacterized protein OS=Clost...   138   2e-31
tr|B1BEF3|B1BEF3_CLOBO Putative uncharacterized protein (Fragmen...   138   2e-31
tr|B1BEE0|B1BEE0_CLOBO Putative uncharacterized protein OS=Clost...   138   2e-31
tr|B1BE06|B1BE06_CLOBO Putative uncharacterized protein OS=Clost...   138   2e-31
tr|B1C1N3|B1C1N3_9FIRM Putative uncharacterized protein OS=Clost...   137   4e-31
tr|B1QFN6|B1QFN6_CLOBO Putative uncharacterized protein OS=Clost...   134   2e-30
tr|B1QFL7|B1QFL7_CLOBO Putative uncharacterized protein (Fragmen...   134   2e-30
tr|B1RTR7|B1RTR7_CLOPE Putative uncharacterized protein OS=Clost...   134   3e-30
tr|B1RKU9|B1RKU9_CLOPE Putative uncharacterized protein OS=Clost...   134   3e-30
tr|B1RCB4|B1RCB4_CLOPE Putative uncharacterized protein OS=Clost...   134   3e-30
tr|B1BTI8|B1BTI8_CLOPE Putative uncharacterized protein OS=Clost...   134   3e-30
tr|B1BLN6|B1BLN6_CLOPE Putative uncharacterized protein OS=Clost...   134   3e-30
tr|B1BEX7|B1BEX7_CLOPE Putative uncharacterized protein OS=Clost...   134   3e-30
tr|A8R9P5|A8R9P5_9FIRM Putative uncharacterized protein OS=Eubac...   132   9e-30
tr|Q877Q8|Q877Q8_CLOTE Putative uncharacterized protein OS=Clost...   130   3e-29
tr|A7DZU9|A7DZU9_CLOSP Hypothetical CTC00065-like protein OS=Clo...   130   3e-29
tr|B0A9C5|B0A9C5_9CLOT Putative uncharacterized protein OS=Clost...   124   2e-27
tr|B0A7G5|B0A7G5_9CLOT Putative uncharacterized protein OS=Clost...   124   2e-27
tr|B5HM15|B5HM15_9ACTO Putative uncharacterized protein OS=Strep...   122   7e-27
tr|B5G7E4|B5G7E4_9ACTO Putative uncharacterized protein OS=Strep...   122   7e-27
tr|B4V362|B4V362_9ACTO Putative uncharacterized protein OS=Strep...   120   3e-26
tr|Q3BKH9|Q3BKH9_9PROT Putative uncharacterized protein OS=Magne...   110   4e-23
tr|A5ZQM3|A5ZQM3_9FIRM Putative uncharacterized protein OS=Rumin...   108   1e-22
tr|Q4EE25|Q4EE25_LISMO Putative uncharacterized protein OS=Liste...   108   1e-22
tr|A9FW92|A9FW92_9RHOB Putative uncharacterized protein OS=Phaeo...   108   2e-22
tr|Q1MP74|Q1MP74_LAWIP Putative uncharacterized protein LI1149 O...   104   3e-21
tr|Q5ZY04|Q5ZY04_LEGPH Hypothetical CTC00065, TC0129 OS=Legionel...   102   1e-20
tr|A5ZYV5|A5ZYV5_9FIRM Putative uncharacterized protein (Fragmen...   102   1e-20
tr|A6FJV3|A6FJV3_9RHOB Putative uncharacterized protein OS=Roseo...    98   2e-19

>tr|A0Q208|A0Q208_CLONN Putative uncharacterized protein
           OS=Clostridium novyi (strain NT) GN=NT01CX_0152 PE=4
           SV=1
          Length = 213

 Score =  138 bits (347), Expect = 2e-31
 Identities = 67/94 (71%), Positives = 73/94 (77%)
 Frame = -3

Query: 364 IEVPNLPVDVNSWGRSACYP*SNFYPLSDGPSTWNRRITKADFRPCSTGRSRSQAPFCLC 185
           IEVPNLPVDV+SWGRSACYP  +FYPLSDGPS  N RITK DFRPCST   RSQAPFCLC
Sbjct: 6   IEVPNLPVDVDSWGRSACYPRGSFYPLSDGPSIQNHRITKPDFRPCSTCMCRSQAPFCLC 65

Query: 184 TRRLISVQPEETFARLRYSLGDLRPIETVYLGLS 83
           T R IS + E TF RLRY LG  RP +T +L +S
Sbjct: 66  TLRAISDRAEGTFGRLRYLLGGDRPSQTAHLAMS 99


>tr|A0PXN7|A0PXN7_CLONN Putative uncharacterized protein
           OS=Clostridium novyi (strain NT) GN=NT01CX_0251 PE=4
           SV=1
          Length = 213

 Score =  138 bits (347), Expect = 2e-31
 Identities = 67/94 (71%), Positives = 73/94 (77%)
 Frame = -3

Query: 364 IEVPNLPVDVNSWGRSACYP*SNFYPLSDGPSTWNRRITKADFRPCSTGRSRSQAPFCLC 185
           IEVPNLPVDV+SWGRSACYP  +FYPLSDGPS  N RITK DFRPCST   RSQAPFCLC
Sbjct: 6   IEVPNLPVDVDSWGRSACYPRGSFYPLSDGPSIQNHRITKPDFRPCSTCMCRSQAPFCLC 65

Query: 184 TRRLISVQPEETFARLRYSLGDLRPIETVYLGLS 83
           T R IS + E TF RLRY LG  RP +T +L +S
Sbjct: 66  TLRAISDRAEGTFGRLRYLLGGDRPSQTAHLAMS 99


>tr|B1BEF3|B1BEF3_CLOBO Putative uncharacterized protein (Fragment)
           OS=Clostridium botulinum C str. Eklund GN=CBC_A1887 PE=4
           SV=1
          Length = 107

 Score =  138 bits (347), Expect = 2e-31
 Identities = 67/94 (71%), Positives = 73/94 (77%)
 Frame = -3

Query: 364 IEVPNLPVDVNSWGRSACYP*SNFYPLSDGPSTWNRRITKADFRPCSTGRSRSQAPFCLC 185
           IEVPNLPVDV+SWGRSACYP  +FYPLSDGPS  N RITK DFRPCST   RSQAPFCLC
Sbjct: 6   IEVPNLPVDVDSWGRSACYPRGSFYPLSDGPSIQNHRITKPDFRPCSTCMCRSQAPFCLC 65

Query: 184 TRRLISVQPEETFARLRYSLGDLRPIETVYLGLS 83
           T R IS + E TF RLRY LG  RP +T +L +S
Sbjct: 66  TLRAISDRAEGTFGRLRYLLGGDRPSQTAHLAMS 99


>tr|B1BEE0|B1BEE0_CLOBO Putative uncharacterized protein
           OS=Clostridium botulinum C str. Eklund GN=CBC_A1890 PE=4
           SV=1
          Length = 210

 Score =  138 bits (347), Expect = 2e-31
 Identities = 67/94 (71%), Positives = 73/94 (77%)
 Frame = -3

Query: 364 IEVPNLPVDVNSWGRSACYP*SNFYPLSDGPSTWNRRITKADFRPCSTGRSRSQAPFCLC 185
           IEVPNLPVDV+SWGRSACYP  +FYPLSDGPS  N RITK DFRPCST   RSQAPFCLC
Sbjct: 6   IEVPNLPVDVDSWGRSACYPRGSFYPLSDGPSIQNHRITKPDFRPCSTCMCRSQAPFCLC 65

Query: 184 TRRLISVQPEETFARLRYSLGDLRPIETVYLGLS 83
           T R IS + E TF RLRY LG  RP +T +L +S
Sbjct: 66  TLRAISDRAEGTFGRLRYLLGGDRPSQTAHLAMS 99


>tr|B1BE06|B1BE06_CLOBO Putative uncharacterized protein
           OS=Clostridium botulinum C str. Eklund GN=CBC_0392 PE=4
           SV=1
          Length = 213

 Score =  138 bits (347), Expect = 2e-31
 Identities = 67/94 (71%), Positives = 73/94 (77%)
 Frame = -3

Query: 364 IEVPNLPVDVNSWGRSACYP*SNFYPLSDGPSTWNRRITKADFRPCSTGRSRSQAPFCLC 185
           IEVPNLPVDV+SWGRSACYP  +FYPLSDGPS  N RITK DFRPCST   RSQAPFCLC
Sbjct: 6   IEVPNLPVDVDSWGRSACYPRGSFYPLSDGPSIQNHRITKPDFRPCSTCMCRSQAPFCLC 65

Query: 184 TRRLISVQPEETFARLRYSLGDLRPIETVYLGLS 83
           T R IS + E TF RLRY LG  RP +T +L +S
Sbjct: 66  TLRAISDRAEGTFGRLRYLLGGDRPSQTAHLAMS 99


>tr|B1C1N3|B1C1N3_9FIRM Putative uncharacterized protein
           OS=Clostridium spiroforme DSM 1552 GN=CLOSPI_01140 PE=4
           SV=1
          Length = 100

 Score =  137 bits (344), Expect = 4e-31
 Identities = 67/92 (72%), Positives = 73/92 (79%)
 Frame = -3

Query: 358 VPNLPVDVNSWGRSACYP*SNFYPLSDGPSTWNRRITKADFRPCSTGRSRSQAPFCLCTR 179
           +PNLPVDVNSWGRSACYP  +FYPLSDG S  +RRITK DFRPCST  SRSQ PFCLCT 
Sbjct: 1   MPNLPVDVNSWGRSACYPQGSFYPLSDGLSIQHRRITKPDFRPCSTCWSRSQTPFCLCTL 60

Query: 178 RLISVQPEETFARLRYSLGDLRPIETVYLGLS 83
           RLIS+Q E  F RLRYSLG  RP +T +L LS
Sbjct: 61  RLISIQAEGIFGRLRYSLGGDRPSQTAHLTLS 92


>tr|B1QFN6|B1QFN6_CLOBO Putative uncharacterized protein
           OS=Clostridium botulinum NCTC 2916 GN=CBN_0042 PE=4 SV=1
          Length = 218

 Score =  134 bits (337), Expect = 2e-30
 Identities = 66/94 (70%), Positives = 72/94 (76%)
 Frame = -3

Query: 364 IEVPNLPVDVNSWGRSACYP*SNFYPLSDGPSTWNRRITKADFRPCSTGRSRSQAPFCLC 185
           IEVPNLPVDV+SWGRSACYP  +FYPLSDGP T   RITK DFRPCST   RSQAPFCLC
Sbjct: 6   IEVPNLPVDVDSWGRSACYPRGSFYPLSDGPPTRYHRITKPDFRPCSTCMCRSQAPFCLC 65

Query: 184 TRRLISVQPEETFARLRYSLGDLRPIETVYLGLS 83
           T R IS + E TF RLRY LG  RP +T +L +S
Sbjct: 66  TLRAISDRAEGTFGRLRYFLGGDRPSQTAHLTMS 99


>tr|B1QFL7|B1QFL7_CLOBO Putative uncharacterized protein (Fragment)
           OS=Clostridium botulinum NCTC 2916 GN=CBN_0002 PE=4 SV=1
          Length = 184

 Score =  134 bits (337), Expect = 2e-30
 Identities = 66/94 (70%), Positives = 72/94 (76%)
 Frame = -3

Query: 364 IEVPNLPVDVNSWGRSACYP*SNFYPLSDGPSTWNRRITKADFRPCSTGRSRSQAPFCLC 185
           IEVPNLPVDV+SWGRSACYP  +FYPLSDGP T   RITK DFRPCST   RSQAPFCLC
Sbjct: 6   IEVPNLPVDVDSWGRSACYPRGSFYPLSDGPPTRYHRITKPDFRPCSTCMCRSQAPFCLC 65

Query: 184 TRRLISVQPEETFARLRYSLGDLRPIETVYLGLS 83
           T R IS + E TF RLRY LG  RP +T +L +S
Sbjct: 66  TLRAISDRAEGTFGRLRYFLGGDRPSQTAHLTMS 99


>tr|B1RTR7|B1RTR7_CLOPE Putative uncharacterized protein
           OS=Clostridium perfringens NCTC 8239 GN=AC7_A0024 PE=4
           SV=1
          Length = 218

 Score =  134 bits (336), Expect = 3e-30
 Identities = 66/94 (70%), Positives = 72/94 (76%)
 Frame = -3

Query: 364 IEVPNLPVDVNSWGRSACYP*SNFYPLSDGPSTWNRRITKADFRPCSTGRSRSQAPFCLC 185
           IEVPNLPVDV+SWGRSACYP  +FYPLSDGP T   RITK DFRPCST   RSQAPFCLC
Sbjct: 6   IEVPNLPVDVDSWGRSACYPRGSFYPLSDGPPTRYHRITKPDFRPCSTCGCRSQAPFCLC 65

Query: 184 TRRLISVQPEETFARLRYSLGDLRPIETVYLGLS 83
           T R IS + E TF RLRY LG  RP +T +L +S
Sbjct: 66  TLRTISDRSEGTFGRLRYFLGGDRPSQTAHLTMS 99


>tr|B1RKU9|B1RKU9_CLOPE Putative uncharacterized protein
           OS=Clostridium perfringens CPE str. F4969 GN=AC5_A0033
           PE=4 SV=1
          Length = 218

 Score =  134 bits (336), Expect = 3e-30
 Identities = 66/94 (70%), Positives = 72/94 (76%)
 Frame = -3

Query: 364 IEVPNLPVDVNSWGRSACYP*SNFYPLSDGPSTWNRRITKADFRPCSTGRSRSQAPFCLC 185
           IEVPNLPVDV+SWGRSACYP  +FYPLSDGP T   RITK DFRPCST   RSQAPFCLC
Sbjct: 6   IEVPNLPVDVDSWGRSACYPRGSFYPLSDGPPTRYHRITKPDFRPCSTCGCRSQAPFCLC 65

Query: 184 TRRLISVQPEETFARLRYSLGDLRPIETVYLGLS 83
           T R IS + E TF RLRY LG  RP +T +L +S
Sbjct: 66  TLRTISDRSEGTFGRLRYFLGGDRPSQTAHLTMS 99