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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920141
Clone id YMU001_000133_E04
Library
Length 528
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000133_E04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ATGCTTCATGCTCTTAAACCTTTTGTGTGTGAGAATGCAGAGATTTTCTGTGTTGAGCTT
CAGATTTTTCGGTACTCTGGCTTGAATGTGAAAGCTTATGGCCTGTTGGTTGAAGAGACG
TTGAGGAAAAACACACTCAAGCTCTTGCCTACAATAAATTGCTTGAAGGAGAACGTCTCC
GAATGCAGCTCTCAAGAAGCGCACGAAGGCTGAAGAGACCGTGTTTTAAGTTATTTCGAT
CTTGATTGCGCATGCTCCCATGTGAAGGTGAGCATCTAGCCCTTCTAGGACTGTAATTCT
GGCCATTCACAAATTTGTTGAGGGTTCTAATTTTCTTTATTATTAGACGGTAATTGAATA
CTTGAGCTCTCCCGTCGGCTTCAGGCTTCTGCATCTACCAATAATCAACTGTAAGCTTTT
TATTGTCAATTGACCCTAAGCAGGTAATGACTATTTTGAAGAGTATATGTGGTATTGGTT
GAATGGCTCAAATCAGCCCACTTCATCGGCAACATTATGACTGCTGAA
■■Homology search results ■■ -
sp_hit_id Q6FV36
Definition sp|Q6FV36|MED5_CANGA Mediator of RNA polymerase II transcription subunit 5 OS=Candida glabrata
Align length 80
Score (bit) 33.5
E-value 0.65
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920141|Adiantum capillus-veneris mRNA, clone:
YMU001_000133_E04.
         (528 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6FV36|MED5_CANGA Mediator of RNA polymerase II transcription...    33   0.65 
sp|Q9FVQ9|FB29_ARATH Putative F-box protein At1g32140 OS=Arabido...    31   3.2  
sp|Q9Z1T4|CNKR2_RAT Connector enhancer of kinase suppressor of r...    30   7.2  
sp|Q80YA9|CNKR2_MOUSE Connector enhancer of kinase suppressor of...    30   7.2  
sp|Q8WXI2|CNKR2_HUMAN Connector enhancer of kinase suppressor of...    30   7.2  
sp|Q03SQ0|SECA_LACBA Protein translocase subunit secA OS=Lactoba...    30   9.2  

>sp|Q6FV36|MED5_CANGA Mediator of RNA polymerase II transcription
           subunit 5 OS=Candida glabrata GN=NUT1 PE=3 SV=1
          Length = 1099

 Score = 33.5 bits (75), Expect = 0.65
 Identities = 21/80 (26%), Positives = 37/80 (46%)
 Frame = -1

Query: 285 EGLDAHLHMGACAIKIEIT*NTVSSAFVRFLRAAFGDVLLQAIYCRQELECVFPQRLFNQ 106
           +G+  H    +CA  + +T N V S  ++ LRA     +L+  +C    E V     F Q
Sbjct: 123 KGILIHFFSKSCAFFVNLTDNLVISQLIKDLRATIVPCILETNFCDISNELVVAIAKFLQ 182

Query: 105 QAISFHIQARVPKNLKLNTE 46
             + F      P+ +++N+E
Sbjct: 183 AVLRF-----TPQPIQINSE 197


>sp|Q9FVQ9|FB29_ARATH Putative F-box protein At1g32140
           OS=Arabidopsis thaliana GN=At1g32140 PE=4 SV=1
          Length = 591

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +1

Query: 109 VEETLRKNTLKLLPTINCLKE-NVSECSSQEAHEG*RDRVLSYFDLDCACSHV 264
           ++E+ R NT  ++    CLKE ++ E  + +      DR+ S+    C+CS+V
Sbjct: 317 IDESERNNTAYIIGDYGCLKEVDLDEVVNPQESVEVGDRIYSFSPFVCSCSYV 369


>sp|Q9Z1T4|CNKR2_RAT Connector enhancer of kinase suppressor of ras
           2 OS=Rattus norvegicus GN=Cnksr2 PE=1 SV=1
          Length = 1032

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 22/60 (36%), Positives = 31/60 (51%)
 Frame = -1

Query: 180 GDVLLQAIYCRQELECVFPQRLFNQQAISFHIQARVPKNLKLNTENLCILTHKRFKSMKH 1
           GD LL+  +  QELE +   R+ +Q+ I   +      N  L TENL  L+HK   S K+
Sbjct: 41  GDQLLRITH--QELEDLGVSRIGHQELILEAVDLLCALNYGLETENLKTLSHKLNASAKN 98


>sp|Q80YA9|CNKR2_MOUSE Connector enhancer of kinase suppressor of
           ras 2 OS=Mus musculus GN=Cnksr2 PE=1 SV=1
          Length = 1032

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 22/60 (36%), Positives = 31/60 (51%)
 Frame = -1

Query: 180 GDVLLQAIYCRQELECVFPQRLFNQQAISFHIQARVPKNLKLNTENLCILTHKRFKSMKH 1
           GD LL+  +  QELE +   R+ +Q+ I   +      N  L TENL  L+HK   S K+
Sbjct: 41  GDQLLRITH--QELEDLGVSRIGHQELILEAVDLLCALNYGLETENLKTLSHKLNASAKN 98


>sp|Q8WXI2|CNKR2_HUMAN Connector enhancer of kinase suppressor of
           ras 2 OS=Homo sapiens GN=CNKSR2 PE=1 SV=1
          Length = 1034

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 22/60 (36%), Positives = 31/60 (51%)
 Frame = -1

Query: 180 GDVLLQAIYCRQELECVFPQRLFNQQAISFHIQARVPKNLKLNTENLCILTHKRFKSMKH 1
           GD LL+  +  QELE +   R+ +Q+ I   +      N  L TENL  L+HK   S K+
Sbjct: 41  GDQLLRITH--QELEDLGVSRIGHQELILEAVDLLCALNYGLETENLKTLSHKLNASAKN 98


>sp|Q03SQ0|SECA_LACBA Protein translocase subunit secA
           OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170)
           GN=secA PE=3 SV=1
          Length = 787

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 394 MQKPEADGRAQVFNYRLIIKKIRTLNKFVNGQNYSPRR 281
           +++   DG   V   R+I K++ +  K V G NY  R+
Sbjct: 558 LERMNVDGEDAVIRSRMITKQVESAQKRVEGNNYDSRK 595
tr_hit_id A7GUK6
Definition tr|A7GUK6|A7GUK6_BACCN Putative uncharacterized protein OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98)
Align length 57
Score (bit) 40.0
E-value 0.074
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920141|Adiantum capillus-veneris mRNA, clone:
YMU001_000133_E04.
         (528 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7GUK6|A7GUK6_BACCN Putative uncharacterized protein OS=Bacil...    40   0.074
tr|Q84KA3|Q84KA3_CUCME RING zinc finger protein-like protein OS=...    37   0.48 
tr|Q6GX29|Q6GX29_CUCME RING zinc finger protein-like protein (Fr...    37   0.48 
tr|Q9MA94|Q9MA94_ARATH T12H1.22 protein OS=Arabidopsis thaliana ...    35   1.8  
tr|Q8GYA2|Q8GYA2_ARATH Putative uncharacterized protein At3g0525...    35   1.8  
tr|Q6FPQ5|Q6FPQ5_CANGA Similar to uniprot|P40564 Saccharomyces c...    35   2.4  
tr|Q5CYT0|Q5CYT0_CRYPV Uncharacterized conserved protein OS=Cryp...    34   5.2  
tr|Q10BN7|Q10BN7_ORYSJ Os03g0809800 protein OS=Oryza sativa subs...    34   5.3  
tr|B8ALU6|B8ALU6_ORYSI Putative uncharacterized protein OS=Oryza...    34   5.3  

>tr|A7GUK6|A7GUK6_BACCN Putative uncharacterized protein OS=Bacillus
           cereus subsp. cytotoxis (strain NVH 391-98)
           GN=Bcer98_3615 PE=4 SV=1
          Length = 148

 Score = 40.0 bits (92), Expect = 0.074
 Identities = 20/57 (35%), Positives = 30/57 (52%)
 Frame = +1

Query: 7   HALKPFVCENAEIFCVELQIFRYSGLNVKAYGLLVEETLRKNTLKLLPTINCLKENV 177
           H L P +CEN E   +++Q F  SG  +    LL+ +  RKN+ K+      L EN+
Sbjct: 80  HYLLPIICENEEEMIIQVQSFGTSGELLLNERLLINKNNRKNSTKITSFFEALNENI 136


>tr|Q84KA3|Q84KA3_CUCME RING zinc finger protein-like protein
           OS=Cucumis melo GN=Rzf PE=4 SV=1
          Length = 210

 Score = 37.4 bits (85), Expect = 0.48
 Identities = 20/53 (37%), Positives = 31/53 (58%)
 Frame = +1

Query: 1   MLHALKPFVCENAEIFCVELQIFRYSGLNVKAYGLLVEETLRKNTLKLLPTIN 159
           +L A KPF+   A+ F +EL++F  SGLN++AY  +  + L  N   +L   N
Sbjct: 135 ILDAAKPFLSARADRFMLELELFLASGLNIEAYDSVYLQRLGWNEPIVLSVAN 187


>tr|Q6GX29|Q6GX29_CUCME RING zinc finger protein-like protein
           (Fragment) OS=Cucumis melo GN=Rzf PE=2 SV=1
          Length = 68

 Score = 37.4 bits (85), Expect = 0.48
 Identities = 20/53 (37%), Positives = 31/53 (58%)
 Frame = +1

Query: 1   MLHALKPFVCENAEIFCVELQIFRYSGLNVKAYGLLVEETLRKNTLKLLPTIN 159
           +L A KPF+   A+ F +EL++F  SGLN++AY  +  + L  N   +L   N
Sbjct: 12  ILDAAKPFLSARADRFMLELELFLASGLNIEAYDSVYLQRLGWNEPIVLSVAN 64


>tr|Q9MA94|Q9MA94_ARATH T12H1.22 protein OS=Arabidopsis thaliana
           GN=T12H1.22 PE=4 SV=1
          Length = 284

 Score = 35.4 bits (80), Expect = 1.8
 Identities = 18/58 (31%), Positives = 32/58 (55%)
 Frame = +1

Query: 10  ALKPFVCENAEIFCVELQIFRYSGLNVKAYGLLVEETLRKNTLKLLPTINCLKENVSE 183
           A +PFV    + F  EL++F  +GLN++AY  + ++ L  N  + +   +  +E V E
Sbjct: 208 AARPFVMARTDRFVDELELFLAAGLNLEAYDAIYKQGLEGNNRREIGAASEEREEVEE 265


>tr|Q8GYA2|Q8GYA2_ARATH Putative uncharacterized protein
           At3g05250/T12H1_22 (At3g05250) OS=Arabidopsis thaliana
           GN=At3g05250/T12H1_22 PE=2 SV=1
          Length = 278

 Score = 35.4 bits (80), Expect = 1.8
 Identities = 18/58 (31%), Positives = 32/58 (55%)
 Frame = +1

Query: 10  ALKPFVCENAEIFCVELQIFRYSGLNVKAYGLLVEETLRKNTLKLLPTINCLKENVSE 183
           A +PFV    + F  EL++F  +GLN++AY  + ++ L  N  + +   +  +E V E
Sbjct: 202 AARPFVMARTDRFVDELELFLAAGLNLEAYDAIYKQGLEGNNRREIGAASEEREEVEE 259


>tr|Q6FPQ5|Q6FPQ5_CANGA Similar to uniprot|P40564 Saccharomyces
           cerevisiae YIR004w DJP1 OS=Candida glabrata
           GN=CAGL0J01936g PE=4 SV=1
          Length = 425

 Score = 35.0 bits (79), Expect = 2.4
 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 10/79 (12%)
 Frame = +1

Query: 1   MLHALKPFVCENAEIFCVELQIFRYSGL--NVKAYGLLVEETLR--------KNTLKLLP 150
           +LH +    CE A+IF     +F + G+  +VKA G ++ +TLR        +NT+K L 
Sbjct: 240 ILHTIGDIYCEKAKIFLASQNLFGFGGIFHSVKAKGGVLMDTLRTVSAAIDAQNTMKEL- 298

Query: 151 TINCLKENVSECSSQEAHE 207
                 E + E S+++  E
Sbjct: 299 ------EKMKEASTEDTEE 311


>tr|Q5CYT0|Q5CYT0_CRYPV Uncharacterized conserved protein
           OS=Cryptosporidium parvum Iowa II GN=cgd7_1150 PE=4 SV=1
          Length = 1191

 Score = 33.9 bits (76), Expect = 5.2
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = -3

Query: 316 KFVNGQNYSPRRARCSPSHGSMRNQDRNNLKHGLFSLRALLESCIRRR 173
           K +N +++  RR +  PSH     +D N + + L S   L+++CI  +
Sbjct: 647 KLINQRSFLHRRCKSIPSHWKYSQEDENKVLYDLESSNTLMKACINEQ 694


>tr|Q10BN7|Q10BN7_ORYSJ Os03g0809800 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0809800 PE=4 SV=1
          Length = 251

 Score = 33.9 bits (76), Expect = 5.3
 Identities = 15/45 (33%), Positives = 27/45 (60%)
 Frame = +1

Query: 1   MLHALKPFVCENAEIFCVELQIFRYSGLNVKAYGLLVEETLRKNT 135
           ++ A +PF+    E F  E+++F  S LN+ AY  L  + L+++T
Sbjct: 172 LMEAARPFLLGQTERFVAEVELFLVSHLNIDAYSRLRVQRLKEST 216


>tr|B8ALU6|B8ALU6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_14011 PE=4 SV=1
          Length = 262

 Score = 33.9 bits (76), Expect = 5.3
 Identities = 15/45 (33%), Positives = 27/45 (60%)
 Frame = +1

Query: 1   MLHALKPFVCENAEIFCVELQIFRYSGLNVKAYGLLVEETLRKNT 135
           ++ A +PF+    E F  E+++F  S LN+ AY  L  + L+++T
Sbjct: 184 LMEAARPFLLGQTERFVAEVELFLVSHLNIDAYSRLRVQRLKEST 228