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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920149
Clone id YMU001_000133_F03
Library
Length 624
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000133_F03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CACACACAGACAGAGAGACGTACCTAGTCTTGCTTGCTATTTGGTGCTCGTGATTGCCGT
TTGCTGCGTCCTCTACACACACACACAAACACGCACACCTAAATCAACTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTACTGGAACTACATCGGCACAGGGATAATCTAATGAGAAGACAA
AGAGCACTACAGCCTTAGAGGCAGATCACAGATTTCTTCGGATCGAGAGTAGCAAAAGTG
GAAGGAGAAGCAAGAGTCCGGCAGCCAGCACAAAGGAGTACCCACATGATTCATACCAAA
GGCACCCTCATTGACAGGGCGATTGAGCTTAGGAAATCGAGACGACCACGACCAAGATGC
AGAAGCACACTTCACCGGAGGAGACTACAACAAAGGATTAGAAGCATTCTAGCCAGACAC
CCAGAATGCTCCTAAGAAGGTTATTTAATACTTTGTATTTAGTTTTTCACATTTACTTTC
ACATTTTTCACACTTAGTACTTTAGTCCTACGGTACCCAGACATTGTAACAGATTCACCA
CTTTTGTATCAGTTTGGTCTCATAGGTCATTCTGGCCTTTTGAAGACATAATTATAACTC
TTCATTTCATTTCATTCTCTCTCT
■■Homology search results ■■ -
sp_hit_id A8CG34
Definition sp|A8CG34|P121C_HUMAN Nuclear envelope pore membrane protein POM 121C OS=Homo sapiens
Align length 67
Score (bit) 32.7
E-value 1.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920149|Adiantum capillus-veneris mRNA, clone:
YMU001_000133_F03.
         (624 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A8CG34|P121C_HUMAN Nuclear envelope pore membrane protein POM...    33   1.5  
sp|Q5R880|PLA2R_PONAB Secretory phospholipase A2 receptor OS=Pon...    33   1.6  
sp|Q13018|PLA2R_HUMAN Secretory phospholipase A2 receptor OS=Hom...    32   2.0  
sp|P52591|PO121_RAT Nuclear envelope pore membrane protein POM 1...    32   2.6  
sp|Q96HA1|P121A_HUMAN Nuclear envelope pore membrane protein POM...    31   4.5  
sp|Q8K3Z9|PO121_MOUSE Nuclear envelope pore membrane protein POM...    30   7.7  
sp|P38195|ECM13_YEAST Protein ECM13 OS=Saccharomyces cerevisiae ...    30   7.7  

>sp|A8CG34|P121C_HUMAN Nuclear envelope pore membrane protein POM
           121C OS=Homo sapiens GN=POM121C PE=1 SV=2
          Length = 1229

 Score = 32.7 bits (73), Expect = 1.5
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
 Frame = +2

Query: 173 EDKEHYSLRGRSQISSDRE*QKWKEKQESGSQHK--------GVPT*FIPKAPSLTGRLS 328
           E K+  ++    QI  D +  K +    SGS H         GVP  F+PK  SL   L+
Sbjct: 295 EKKKKRTVEEEDQIFLDGQENKRRRHDSSGSGHSAFEPLVASGVPASFVPKPGSLKRGLN 354

Query: 329 LGNRDDH 349
             + DDH
Sbjct: 355 SQSSDDH 361


>sp|Q5R880|PLA2R_PONAB Secretory phospholipase A2 receptor OS=Pongo
           abelii GN=PLA2R1 PE=2 SV=2
          Length = 1464

 Score = 32.7 bits (73), Expect = 1.6
 Identities = 22/76 (28%), Positives = 33/76 (43%)
 Frame = -1

Query: 426 FWVSG*NASNPLL*SPPVKCASASWSWSSRFPKLNRPVNEGAFGMNHVGTPLCWLPDSCF 247
           FW+ G N  NPL         + SW WS R P ++  ++   FG +     +     +  
Sbjct: 736 FWI-GFNKRNPL--------NAGSWEWSDRIPVVSSFLDNNYFGEDARNCAVYKANKTLL 786

Query: 246 SFHFCYSRSEEICDLP 199
             H C S+ E IC +P
Sbjct: 787 PLH-CGSKREWICKIP 801


>sp|Q13018|PLA2R_HUMAN Secretory phospholipase A2 receptor OS=Homo
           sapiens GN=PLA2R1 PE=1 SV=2
          Length = 1463

 Score = 32.3 bits (72), Expect = 2.0
 Identities = 25/88 (28%), Positives = 39/88 (44%)
 Frame = -1

Query: 462 LNTKY*ITFLGAFWVSG*NASNPLL*SPPVKCASASWSWSSRFPKLNRPVNEGAFGMNHV 283
           L++K+  T    FW+ G N  NPL         + SW WS R P ++  ++   FG +  
Sbjct: 722 LHSKFNWTEERQFWI-GFNKRNPL--------NAGSWEWSDRTPVVSSFLDNTYFGEDAR 772

Query: 282 GTPLCWLPDSCFSFHFCYSRSEEICDLP 199
              +     +    H C S+ E IC +P
Sbjct: 773 NCAVYKANKTLLPLH-CGSKREWICKIP 799


>sp|P52591|PO121_RAT Nuclear envelope pore membrane protein POM 121
           OS=Rattus norvegicus GN=Pom121 PE=1 SV=1
          Length = 1199

 Score = 32.0 bits (71), Expect = 2.6
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
 Frame = +2

Query: 173 EDKEHYSLRGRSQISSDRE*QKWKEKQESGSQHK--------GVPT*FIPKAPSLTGRLS 328
           ++K+  ++    Q+  D +  K +    SGS H         GVP  F+PK  SL   L+
Sbjct: 292 KEKKKRTVAEEDQLHLDGQENKRRRHDSSGSGHSAFEPLVANGVPAAFVPKPGSLKRSLA 351

Query: 329 LGNRDDH 349
             + DDH
Sbjct: 352 SQSSDDH 358


>sp|Q96HA1|P121A_HUMAN Nuclear envelope pore membrane protein POM
           121 OS=Homo sapiens GN=POM121 PE=1 SV=2
          Length = 1249

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
 Frame = +2

Query: 173 EDKEHYSLRGRSQISSDRE*QKWKEKQESGSQHK--------GVPT*FIPKAPSLTGRLS 328
           E ++  ++    QI  D +  K +    SGS H         GVP  F+PK  SL   L+
Sbjct: 318 EKEKKRTVEEEDQIFLDGQENKRRRHDSSGSGHSAFEPLVANGVPASFVPKPGSLKRGLN 377

Query: 329 LGNRDDH 349
             + DDH
Sbjct: 378 SQSSDDH 384


>sp|Q8K3Z9|PO121_MOUSE Nuclear envelope pore membrane protein POM
           121 OS=Mus musculus GN=Pom121 PE=1 SV=2
          Length = 1200

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
 Frame = +2

Query: 173 EDKEHYSLRGRSQISSDRE*QKWKEKQESGSQHK--------GVPT*FIPKAPSLTGRLS 328
           ++K+  ++    Q+  D +  K +     GS H         GVP  F+PK  SL   L+
Sbjct: 292 KEKKKRTVAEEDQLHLDGQENKRRRHDSGGSGHSAFEPLVANGVPAAFVPKPGSLKRSLA 351

Query: 329 LGNRDDH 349
             + DDH
Sbjct: 352 SQSSDDH 358


>sp|P38195|ECM13_YEAST Protein ECM13 OS=Saccharomyces cerevisiae
           GN=ECM13 PE=1 SV=1
          Length = 257

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 296 PKAPSLTGRLSLGNRDDHDQDAEAHFTGGDYNKGLEAF 409
           P A +L+   S  + D  D D E  ++GGDYNK ++ +
Sbjct: 118 PDADTLSSTDSEDDDDYEDYDFEYDYSGGDYNKKIDMY 155
tr_hit_id Q6YBL7
Definition tr|Q6YBL7|Q6YBL7_STRPN Wzy (Fragment) OS=Streptococcus pneumoniae
Align length 66
Score (bit) 33.9
E-value 8.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920149|Adiantum capillus-veneris mRNA, clone:
YMU001_000133_F03.
         (624 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6YBL7|Q6YBL7_STRPN Wzy (Fragment) OS=Streptococcus pneumonia...    34   8.0  
tr|A6YIB3|A6YIB3_STRPN Wzy OS=Streptococcus pneumoniae PE=4 SV=1       34   8.0  

>tr|Q6YBL7|Q6YBL7_STRPN Wzy (Fragment) OS=Streptococcus pneumoniae
           GN=wzy PE=4 SV=1
          Length = 248

 Score = 33.9 bits (76), Expect = 8.0
 Identities = 22/66 (33%), Positives = 32/66 (48%)
 Frame = +3

Query: 426 MLLRRLFNTLYLVFHIYFHIFHT*YFSPTVPRHCNRFTTFVSVWSHRSFWPFEDIIITLH 605
           MLL  LF +++L+  I F +F   +F P V      F +  S   +R+ W  E     LH
Sbjct: 1   MLLNFLFISIFLLIIITFILFEGDFFQPAVILTLTYFISIASALVNRNVWGTE-----LH 55

Query: 606 FISFSL 623
           F +F L
Sbjct: 56  FKTFGL 61


>tr|A6YIB3|A6YIB3_STRPN Wzy OS=Streptococcus pneumoniae PE=4 SV=1
          Length = 445

 Score = 33.9 bits (76), Expect = 8.0
 Identities = 22/66 (33%), Positives = 32/66 (48%)
 Frame = +3

Query: 426 MLLRRLFNTLYLVFHIYFHIFHT*YFSPTVPRHCNRFTTFVSVWSHRSFWPFEDIIITLH 605
           MLL  LF +++L+  I F +F   +F P V      F +  S   +R+ W  E     LH
Sbjct: 1   MLLNFLFISIFLLIIITFILFEGDFFQPAVILTLTYFISIASALVNRNVWGTE-----LH 55

Query: 606 FISFSL 623
           F +F L
Sbjct: 56  FKTFGL 61