BP920159 |
Clone id |
YMU001_000133_G03 |
Library |
YMU01 |
Length |
420 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000133_G03. |
Accession |
BP920159 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
CGCTGATAACTAAATTTGAGTGGACAGAAGAGTGCGAGGAAGCTTTTCAAACGTTGAAGC AGAGATTAATTTCCGCTCCAATATTAAAAGCTCCGGATTGGGAAAAGATCTTTCACATTC ACGTGGATGCATCAACGTATGCAATAGGATGCATACTTGCACAACTTGGAGAGAACAACA TGGATTTTCCAATAAGTTACTCCACTAGACAATTGAACAATGCAGAGAAGAATTACACGA CAACTGAGAGGGAGGGATTAGGTATGGTCCATGCGGTGAAAAAGTTTAGACACTACTTAC TTTCCAATAAATTTGTATTCTTCGTTGATCACCAAGCACTGCTGTATTTAGTAAACAAAT CTTGCAGTACGGAAAGGATTGTTTGATGGTTCATCATACTGCTTGAGTGTGATTTTACAG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P04323 |
Definition |
sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster |
Align length |
129 |
Score (bit) |
94.4 |
E-value |
2.0e-19 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP920159|Adiantum capillus-veneris mRNA, clone: YMU001_000133_G03. (420 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from tra... 94 2e-19 sp|P20825|POL2_DROME Retrovirus-related Pol polyprotein from tra... 94 2e-19 sp|P10394|POL4_DROME Retrovirus-related Pol polyprotein from tra... 89 7e-18 sp|Q9UR07|RTF23_SCHPO Retrotransposable element Tf2 155 kDa prot... 81 2e-15 sp|Q9C0R2|RTF22_SCHPO Retrotransposable element Tf2 155 kDa prot... 81 2e-15 sp|Q05654|RTF21_SCHPO Retrotransposable element Tf2 155 kDa prot... 81 2e-15 sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein OS=Sa... 77 2e-14 sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein OS=Sa... 77 3e-14 sp|Q8I7P9|POL5_DROME Retrovirus-related Pol polyprotein from tra... 74 2e-13 sp|P10401|POLY_DROME Retrovirus-related Pol polyprotein from tra... 72 9e-13 sp|P05400|POL_CERV Enzymatic polyprotein OS=Carnation etched rin... 57 4e-08 sp|P09523|POL_FMVD Enzymatic polyprotein OS=Figwort mosaic virus... 50 3e-06 sp|P03556|POL_CAMVD Enzymatic polyprotein OS=Cauliflower mosaic ... 49 6e-06 sp|P03554|POL_CAMVS Enzymatic polyprotein OS=Cauliflower mosaic ... 49 8e-06 sp|Q02964|POL_CAMVE Enzymatic polyprotein OS=Cauliflower mosaic ... 48 1e-05 sp|P03555|POL_CAMVC Enzymatic polyprotein OS=Cauliflower mosaic ... 48 1e-05 sp|Q00962|POL_CAMVN Enzymatic polyprotein OS=Cauliflower mosaic ... 47 2e-05 sp|P26809|POL_MLVFF Pol polyprotein OS=Friend murine leukemia vi... 47 4e-05 sp|P26808|POL_MLVFP Pol polyprotein OS=Friend murine leukemia vi... 45 1e-04 sp|P26810|POL_MLVF5 Pol polyprotein OS=Friend murine leukemia vi... 45 1e-04 sp|Q9TTC1|POL_KORV Pro-Pol polyprotein OS=Koala retrovirus GN=pr... 45 1e-04 sp|P21414|POL_GALV Pol polyprotein OS=Gibbon ape leukemia virus ... 45 1e-04 sp|P03355|POL_MLVMO Pol polyprotein OS=Moloney murine leukemia v... 45 1e-04 sp|P03356|POL_MLVAV Pol polyprotein OS=AKV murine leukemia virus... 45 1e-04 sp|Q9P2P1|K1305_HUMAN Integrase catalytic domain-containing prot... 44 3e-04 sp|P11227|POL_MLVRD Pol polyprotein OS=Radiation murine leukemia... 43 6e-04 sp|P31792|POL_FENV1 Pol polyprotein (Fragment) OS=Feline endogen... 42 7e-04 sp|P10272|POL_BAEVM Pol polyprotein OS=Baboon endogenous virus (... 40 0.003 sp|Q7M732|RTL1_MOUSE Retrotransposon-like protein 1 OS=Mus muscu... 35 0.15 sp|A6NKG5|RTL1_HUMAN Retrotransposon-like protein 1 OS=Homo sapi... 34 0.26
>sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=4 SV=1 Length = 1058
Score = 94.4 bits (233), Expect = 2e-19 Identities = 54/129 (41%), Positives = 71/129 (55%) Frame = +3
Query: 30 ECEEAFQTLKQRLISAPILKAPDWEKIFHIHVDASTYAIGCILAQLGENNMDFPISYSTR 209 E + AF+ LK + PILK PD+ K F + DAS A+G +L+Q G P+SY +R Sbjct: 482 EYDSAFKKLKYLISEDPILKVPDFTKKFTLTTDASDVALGAVLSQDGH-----PLSYISR 536
Query: 210 QLNNAEKNYTTTEREGLGMVHAVKKFRHYLLSNKFVFFVDHQALLYLVNKSCSTERIV*W 389 LN E NY+T E+E L +V A K FRHYLL F DHQ L +L ++ W Sbjct: 537 TLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFEISSDHQPLSWLYRMKDPNSKLTRW 596
Query: 390 FIILLECDF 416 + L E DF Sbjct: 597 RVKLSEFDF 605
>sp|P20825|POL2_DROME Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol PE=4 SV=1 Length = 1059
Score = 94.0 bits (232), Expect = 2e-19 Identities = 54/126 (42%), Positives = 74/126 (58%) Frame = +3
Query: 39 EAFQTLKQRLISAPILKAPDWEKIFHIHVDASTYAIGCILAQLGENNMDFPISYSTRQLN 218 EAF+ LK +I PIL+ PD+EK F + DAS A+G +L+Q G PIS+ +R LN Sbjct: 484 EAFEKLKALIIRDPILQLPDFEKKFVLTTDASNLALGAVLSQNGH-----PISFISRTLN 538
Query: 219 NAEKNYTTTEREGLGMVHAVKKFRHYLLSNKFVFFVDHQALLYLVNKSCSTERIV*WFII 398 + E NY+ E+E L +V A K FRHYLL +F+ DHQ L +L N ++ W + Sbjct: 539 DHELNYSAIEKELLAIVWATKTFRHYLLGRQFLIASDHQPLRWLHNLKEPGAKLERWRVR 598
Query: 399 LLECDF 416 L E F Sbjct: 599 LSEYQF 604
>sp|P10394|POL4_DROME Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster GN=POL PE=4 SV=1 Length = 1237
Score = 89.0 bits (219), Expect = 7e-18 Identities = 50/125 (40%), Positives = 69/125 (55%), Gaps = 3/125 (2%) Frame = +3
Query: 15 FEWTEECEEAFQTLKQRLISAPILKAPDWEKIFHIHVDASTYAIGCILAQLGENNMDFPI 194 FEWT+EC++AF LK +LI+ +L+ PD+ K F I DAS A G +L Q N P+ Sbjct: 584 FEWTDECQKAFIHLKSQLINPTLLQYPDFSKEFCITTDASKQACGAVLTQ-NHNGHQLPV 642
Query: 195 SYSTRQLNNAEKNYTTTEREGLGMVHAVKKFRHYLLSNKFVFFVDHQALLYL---VNKSC 365 +Y++R E N +TTE+E + A+ FR Y+ F DH+ L YL VN S Sbjct: 643 AYASRAFTKGESNKSTTEQELAAIHWAIIHFRPYIYGKHFTVKTDHRPLTYLFSMVNPSS 702
Query: 366 STERI 380 RI Sbjct: 703 KLTRI 707
>sp|Q9UR07|RTF23_SCHPO Retrotransposable element Tf2 155 kDa protein type 3 OS=Schizosaccharomyces pombe GN=Tf2-11 PE=4 SV=1 Length = 1333
Score = 80.9 bits (198), Expect = 2e-15 Identities = 40/139 (28%), Positives = 80/139 (57%), Gaps = 4/139 (2%) Frame = +3
Query: 12 KFEWTEECEEAFQTLKQRLISAPILKAPDWEKIFHIHVDASTYAIGCILAQLGENNMDFP 191 +++WT +A + +KQ L+S P+L+ D+ K + DAS A+G +L+Q +++ +P Sbjct: 675 RWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYP 734
Query: 192 ISYSTRQLNNAEKNYTTTEREGLGMVHAVKKFRHYLLS--NKFVFFVDHQALLYLVNKSC 365 + Y + +++ A+ NY+ +++E L ++ ++K +RHYL S F DH+ L+ + Sbjct: 735 VGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNES 794
Query: 366 STE--RIV*WFIILLECDF 416 E R+ W + L + +F Sbjct: 795 EPENKRLARWQLFLQDFNF 813
>sp|Q9C0R2|RTF22_SCHPO Retrotransposable element Tf2 155 kDa protein type 2 OS=Schizosaccharomyces pombe GN=Tf2-7 PE=2 SV=1 Length = 1333
Score = 80.9 bits (198), Expect = 2e-15 Identities = 40/139 (28%), Positives = 80/139 (57%), Gaps = 4/139 (2%) Frame = +3
Query: 12 KFEWTEECEEAFQTLKQRLISAPILKAPDWEKIFHIHVDASTYAIGCILAQLGENNMDFP 191 +++WT +A + +KQ L+S P+L+ D+ K + DAS A+G +L+Q +++ +P Sbjct: 675 RWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYP 734
Query: 192 ISYSTRQLNNAEKNYTTTEREGLGMVHAVKKFRHYLLS--NKFVFFVDHQALLYLVNKSC 365 + Y + +++ A+ NY+ +++E L ++ ++K +RHYL S F DH+ L+ + Sbjct: 735 VGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNES 794
Query: 366 STE--RIV*WFIILLECDF 416 E R+ W + L + +F Sbjct: 795 EPENKRLARWQLFLQDFNF 813
>sp|Q05654|RTF21_SCHPO Retrotransposable element Tf2 155 kDa protein type 1 OS=Schizosaccharomyces pombe GN=Tf2-1 PE=2 SV=1 Length = 1333
Score = 80.9 bits (198), Expect = 2e-15 Identities = 40/139 (28%), Positives = 80/139 (57%), Gaps = 4/139 (2%) Frame = +3
Query: 12 KFEWTEECEEAFQTLKQRLISAPILKAPDWEKIFHIHVDASTYAIGCILAQLGENNMDFP 191 +++WT +A + +KQ L+S P+L+ D+ K + DAS A+G +L+Q +++ +P Sbjct: 675 RWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYP 734
Query: 192 ISYSTRQLNNAEKNYTTTEREGLGMVHAVKKFRHYLLS--NKFVFFVDHQALLYLVNKSC 365 + Y + +++ A+ NY+ +++E L ++ ++K +RHYL S F DH+ L+ + Sbjct: 735 VGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNES 794
Query: 366 STE--RIV*WFIILLECDF 416 E R+ W + L + +F Sbjct: 795 EPENKRLARWQLFLQDFNF 813
>sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-I PE=3 SV=2 Length = 1498
Score = 77.4 bits (189), Expect = 2e-14 Identities = 45/137 (32%), Positives = 74/137 (54%), Gaps = 1/137 (0%) Frame = +3
Query: 12 KFEWTEECEEAFQTLKQRLISAPILKAPDWEKIFHIHVDASTYAIGCILAQL-GENNMDF 188 K +WTE+ ++A + LK L ++P+L + + + + DAS IG +L ++ +N + Sbjct: 881 KSQWTEKQDKAIEKLKAALCNSPVLVPFNNKANYRLTTDASKDGIGAVLEEVDNKNKLVG 940
Query: 189 PISYSTRQLNNAEKNYTTTEREGLGMVHAVKKFRHYLLSNKFVFFVDHQALLYLVNKSCS 368 + Y ++ L +A+KNY E E LG++ A+ FR+ L F DH +LL L NK+ Sbjct: 941 VVGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKNEP 1000
Query: 369 TERIV*WFIILLECDFT 419 R+ W L DFT Sbjct: 1001 ARRVQRWLDDLATYDFT 1017
>sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G PE=1 SV=3 Length = 1547
Score = 77.0 bits (188), Expect = 3e-14 Identities = 45/137 (32%), Positives = 73/137 (53%), Gaps = 1/137 (0%) Frame = +3
Query: 12 KFEWTEECEEAFQTLKQRLISAPILKAPDWEKIFHIHVDASTYAIGCILAQL-GENNMDF 188 K +WTE+ ++A LK L ++P+L + + + + DAS IG +L ++ +N + Sbjct: 855 KSQWTEKQDKAIDKLKDALCNSPVLVPFNNKANYRLTTDASKDGIGAVLEEVDNKNKLVG 914
Query: 189 PISYSTRQLNNAEKNYTTTEREGLGMVHAVKKFRHYLLSNKFVFFVDHQALLYLVNKSCS 368 + Y ++ L +A+KNY E E LG++ A+ FR+ L F DH +LL L NK+ Sbjct: 915 VVGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKNEP 974
Query: 369 TERIV*WFIILLECDFT 419 R+ W L DFT Sbjct: 975 ARRVQRWLDDLATYDFT 991
>sp|Q8I7P9|POL5_DROME Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster GN=pol PE=4 SV=1 Length = 1003
Score = 73.9 bits (180), Expect = 2e-13 Identities = 42/122 (34%), Positives = 65/122 (53%), Gaps = 1/122 (0%) Frame = +3
Query: 27 EECEEAFQTLKQRLISAPILKAPDWEKIFHIHVDASTYAIGCILAQLGENNMDFPISYST 206 E ++F LK L S+ IL P + K FH+ DAS +AIG +L+Q + D PI+Y + Sbjct: 407 ETALQSFNDLKSILCSSEILAFPCFTKPFHLTTDASNWAIGAVLSQ-DDQGRDRPIAYIS 465
Query: 207 RQLNNAEKNYTTTEREGLGMVHAVKKFRHYLL-SNKFVFFVDHQALLYLVNKSCSTERIV 383 R LN E+NY T E+E L ++ ++ R YL + + DHQ L + + ++ Sbjct: 466 RSLNKTEENYATIEKEMLAIIWSLDNLRAYLYGAGTIKVYTDHQPLTFALGNRNFNAKLK 525
Query: 384 *W 389 W Sbjct: 526 RW 527
>sp|P10401|POLY_DROME Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster GN=pol PE=4 SV=1 Length = 1035
Score = 72.0 bits (175), Expect = 9e-13 Identities = 47/126 (37%), Positives = 68/126 (53%), Gaps = 2/126 (1%) Frame = +3
Query: 18 EWTEECEEAFQTLKQRLISAP-ILKAPDWEKIFHIHVDASTYAIGCILAQLGENNMDFPI 194 E+ E AFQ L+ L S ILK PD++K F + DAS IG +L+Q G PI Sbjct: 463 EFNETQRNAFQRLRNILASEDVILKYPDFKKPFDLTTDASASGIGAVLSQEGR-----PI 517
Query: 195 SYSTRQLNNAEKNYTTTEREGLGMVHAVKKFRHYLLSNKFV-FFVDHQALLYLVNKSCST 371 + +R L E+NY T ERE L +V A+ K +++L ++ + F DHQ L + V + Sbjct: 518 TMISRTLKQPEQNYATNERELLAIVWALGKLQNFLYGSREINIFTDHQPLTFAVADRNTN 577
Query: 372 ERIV*W 389 +I W Sbjct: 578 AKIKRW 583
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q0ZCB7 |
Definition |
tr|Q0ZCB7|Q0ZCB7_POPTR Integrase OS=Populus trichocarpa |
Align length |
142 |
Score (bit) |
131.0 |
E-value |
2.0e-29 |
Report |
|