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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920162
Clone id YMU001_000133_G07
Library
Length 416
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000133_G07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GCAGGTATTCAAGAAAGAGCAGGAAAGAAAGAAGGAATCACAGGAGAAGAAGAAGACAGA
GGATAAGAAAGGGGAAAAATCAACAGGTACCTCCTCCAAGGATTCGGAGACTGTCAATGT
ATCCTCTAGTGTGGTTATCATAGAGTTATCCGACAGTGAGGAGATCTTGGTTGCAGCTTC
ATGCCCCTCAGATCGTGTGGTAGCAAATGCAGAAAACATGCTTATCTCACGTAGAGATGT
CATTGATGCATTGCTAAGTGAAAATGATGGCCTTACACAGTCTTGGATAGTACATTCGGG
TGCCTCATTTCATGTGACTCCATATGTGGAGTGTTTCGCTTCTAATCATGCAGGCAAGTA
TGACAAGGTTTACCTTGGGGATAACCATGCTTGTGACATTGAAGGAATGGGCAATG
■■Homology search results ■■ -
sp_hit_id P10978
Definition sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum
Align length 49
Score (bit) 34.3
E-value 0.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920162|Adiantum capillus-veneris mRNA, clone:
YMU001_000133_G07.
         (416 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from tra...    34   0.20 
sp|P24350|IPOU_DROME Inhibitory POU protein OS=Drosophila melano...    34   0.26 
sp|Q8X8V7|YEEJ_ECO57 Uncharacterized protein yeeJ OS=Escherichia...    31   1.7  
sp|Q4L9P0|SRAP_STAHJ Serine-rich adhesin for platelets OS=Staphy...    31   2.2  
sp|Q52QI2|RTL1_BOVIN Retrotransposon-like protein 1 OS=Bos tauru...    30   4.9  
sp|P73599|Y1304_SYNY3 Uncharacterized protein sll1304 OS=Synecho...    29   6.4  
sp|Q7NQH5|RS11_CHRVO 30S ribosomal protein S11 OS=Chromobacteriu...    29   6.4  
sp|Q493T3|PNP_BLOPB Polyribonucleotide nucleotidyltransferase OS...    29   6.4  

>sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from
           transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
          Length = 1328

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +2

Query: 269 GLTQSWIVHSGASFHVTPYVECFASNHAGKYDKVYLGDNHACDIEGMGN 415
           G    W+V + AS H TP  + F    AG +  V +G+     I G+G+
Sbjct: 289 GPESEWVVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGD 337


>sp|P24350|IPOU_DROME Inhibitory POU protein OS=Drosophila
           melanogaster GN=acj6 PE=1 SV=3
          Length = 396

 Score = 33.9 bits (76), Expect = 0.26
 Identities = 18/41 (43%), Positives = 20/41 (48%)
 Frame = -1

Query: 368 PCHTCLHD*KRNTPHMESHEMRHPNVLSKTV*GHHFHLAMH 246
           P H  LH    +  HM SH   HP  LS    GHH H A+H
Sbjct: 168 PTHQHLHGSYHSMNHMMSHH--HPGTLSGHTGGHHGHSAVH 206


>sp|Q8X8V7|YEEJ_ECO57 Uncharacterized protein yeeJ OS=Escherichia coli
            O157:H7 GN=Z3135 PE=3 SV=2
          Length = 2660

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 1/99 (1%)
 Frame = +2

Query: 110  TVNVSSSVVIIELSDSEEILVAASCPSDRVVANAENMLISRRDVIDALLSENDGLTQSWI 289
            T+N+ +  V+   SDS ++      PS+  VA         +DV      EN+G+    I
Sbjct: 1144 TLNIPAQQVVTNNSDSVQLTATVKDPSNHPVAGITVNFTMPQDVAANFTLENNGIA---I 1200

Query: 290  VHSGASFHVTPYVECFASNHAGKYD-KVYLGDNHACDIE 403
              +    HVT          AG +     LG+N+A D +
Sbjct: 1201 TQANGEAHVT-----LKGKKAGTHTVTATLGNNNASDAQ 1234



 Score = 29.3 bits (64), Expect = 6.4
 Identities = 19/70 (27%), Positives = 30/70 (42%)
 Frame = +2

Query: 110  TVNVSSSVVIIELSDSEEILVAASCPSDRVVANAENMLISRRDVIDALLSENDGLTQSWI 289
            T+N+ +  V+   SDS ++      PS+  VA         +DV      EN+G+    I
Sbjct: 1347 TLNIPAQQVVTNNSDSVQLTATVKDPSNHPVAGITVNFTMPQDVAANFTLENNGIA---I 1403

Query: 290  VHSGASFHVT 319
              +    HVT
Sbjct: 1404 TQANGEAHVT 1413


>sp|Q4L9P0|SRAP_STAHJ Serine-rich adhesin for platelets
           OS=Staphylococcus haemolyticus (strain JCSC1435) GN=sraP
           PE=3 SV=1
          Length = 3608

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
 Frame = -3

Query: 342 EAKHSTYGVT*NEAPECTIQDCVRPSFSLSNASMTSLREISMFSAFATTRSEGHEAATKI 163
           E+  ++   + +E+   ++ D +  S SLS+++ TS+ +    S  A+T   G E+A   
Sbjct: 661 ESDSTSASTSLSESTSTSLSDSLSASTSLSDSASTSVSD----STSASTSLSGSESA--- 713

Query: 162 SSLSDN-SMITTLEDTLTVSES 100
            SLSD+ S  T+L ++ + SES
Sbjct: 714 -SLSDSASASTSLSESTSTSES 734


>sp|Q52QI2|RTL1_BOVIN Retrotransposon-like protein 1 OS=Bos taurus
           GN=RTL1 PE=2 SV=2
          Length = 1331

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 168 WLQLHAPQIVW*QMQKTCLSHVEMSLMHC 254
           WLQLHAP+I W  ++  C  H    L +C
Sbjct: 494 WLQLHAPEIDW--VKGRCTFHSPYCLKNC 520


>sp|P73599|Y1304_SYNY3 Uncharacterized protein sll1304
           OS=Synechocystis sp. (strain PCC 6803) GN=sll1304 PE=3
           SV=1
          Length = 287

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 19/63 (30%), Positives = 31/63 (49%)
 Frame = +2

Query: 161 EILVAASCPSDRVVANAENMLISRRDVIDALLSENDGLTQSWIVHSGASFHVTPYVECFA 340
           E+L A  CP   ++ +  +M I  +DVI A L  ++     + +H+ A    TP  + FA
Sbjct: 170 ELLDAVDCPQLGLLLDLFHMNIEEKDVIKAFLQASN---HCFHIHACAKDRGTPGSDSFA 226

Query: 341 SNH 349
             H
Sbjct: 227 WGH 229


>sp|Q7NQH5|RS11_CHRVO 30S ribosomal protein S11 OS=Chromobacterium
           violaceum GN=rpsK PE=3 SV=1
          Length = 131

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
 Frame = +2

Query: 254 LSENDGLTQSWIVHSGASFH----VTPYVECFASNHAGKYDKVYLGDNHACDIEGMG 412
           +++  G   SW    GA F      TP+    A+ HAGK  + Y   N    I+G G
Sbjct: 36  ITDRQGNALSWATSGGAGFKGSRKSTPFAAQVAAEHAGKVAQEYGVKNLEVRIKGPG 92


>sp|Q493T3|PNP_BLOPB Polyribonucleotide nucleotidyltransferase
           OS=Blochmannia pennsylvanicus (strain BPEN) GN=pnp PE=3
           SV=1
          Length = 699

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 14/52 (26%), Positives = 34/52 (65%)
 Frame = +2

Query: 143 ELSDSEEILVAASCPSDRVVANAENMLISRRDVIDALLSENDGLTQSWIVHS 298
           ELS+S+  LV +   S+ ++  +E+ L+S ++++DA++  ++   Q  ++H+
Sbjct: 169 ELSNSKLDLVISGTESNILMVESESCLLSEKEILDAIIFGHE--QQQIVIHN 218
tr_hit_id A5B377
Definition tr|A5B377|A5B377_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 62
Score (bit) 60.1
E-value 5.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920162|Adiantum capillus-veneris mRNA, clone:
YMU001_000133_G07.
         (416 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5B377|A5B377_VITVI Putative uncharacterized protein OS=Vitis...    60   5e-08
tr|A5ATI4|A5ATI4_VITVI Putative uncharacterized protein OS=Vitis...    59   2e-07
tr|A5BKD2|A5BKD2_VITVI Putative uncharacterized protein OS=Vitis...    58   3e-07
tr|A5ADV4|A5ADV4_VITVI Putative uncharacterized protein OS=Vitis...    58   3e-07
tr|A5AQN2|A5AQN2_VITVI Putative uncharacterized protein OS=Vitis...    57   4e-07
tr|A5AMG2|A5AMG2_VITVI Putative uncharacterized protein OS=Vitis...    57   4e-07
tr|A5C844|A5C844_VITVI Putative uncharacterized protein OS=Vitis...    57   5e-07
tr|A5AS37|A5AS37_VITVI Putative uncharacterized protein OS=Vitis...    57   5e-07
tr|A5B6M5|A5B6M5_VITVI Putative uncharacterized protein OS=Vitis...    57   6e-07
tr|A7R7G1|A7R7G1_VITVI Chromosome undetermined scaffold_1754, wh...    56   8e-07
tr|A7QMP4|A7QMP4_VITVI Chromosome undetermined scaffold_127, who...    56   8e-07
tr|A7QG92|A7QG92_VITVI Chromosome undetermined scaffold_91, whol...    56   8e-07
tr|A7QAU0|A7QAU0_VITVI Chromosome chr5 scaffold_72, whole genome...    56   8e-07
tr|A7Q007|A7Q007_VITVI Chromosome chr8 scaffold_41, whole genome...    56   8e-07
tr|A7PQ76|A7PQ76_VITVI Chromosome chr18 scaffold_24, whole genom...    56   8e-07
tr|A7NW85|A7NW85_VITVI Chromosome chr5 scaffold_2, whole genome ...    56   8e-07
tr|A7NUU2|A7NUU2_VITVI Chromosome chr18 scaffold_1, whole genome...    56   8e-07
tr|A5CBM1|A5CBM1_VITVI Putative uncharacterized protein OS=Vitis...    56   8e-07
tr|A5CB53|A5CB53_VITVI Putative uncharacterized protein OS=Vitis...    56   8e-07
tr|A5C9A6|A5C9A6_VITVI Putative uncharacterized protein OS=Vitis...    56   8e-07
tr|A5C6L3|A5C6L3_VITVI Putative uncharacterized protein OS=Vitis...    56   8e-07
tr|A5BPZ5|A5BPZ5_VITVI Putative uncharacterized protein OS=Vitis...    56   8e-07
tr|A5BPB3|A5BPB3_VITVI Putative uncharacterized protein OS=Vitis...    56   8e-07
tr|A5BJQ3|A5BJQ3_VITVI Putative uncharacterized protein OS=Vitis...    56   8e-07
tr|A5BIC7|A5BIC7_VITVI Putative uncharacterized protein OS=Vitis...    56   8e-07
tr|A5BGX3|A5BGX3_VITVI Putative uncharacterized protein OS=Vitis...    56   8e-07
tr|A5BFU1|A5BFU1_VITVI Putative uncharacterized protein OS=Vitis...    56   8e-07
tr|A5BA89|A5BA89_VITVI Putative uncharacterized protein OS=Vitis...    56   8e-07
tr|A5B5N4|A5B5N4_VITVI Putative uncharacterized protein OS=Vitis...    56   8e-07
tr|A5B0C8|A5B0C8_VITVI Putative uncharacterized protein OS=Vitis...    56   8e-07

>tr|A5B377|A5B377_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_037906 PE=4 SV=1
          Length = 1148

 Score = 60.1 bits (144), Expect = 5e-08
 Identities = 28/62 (45%), Positives = 37/62 (59%)
 Frame = +2

Query: 230 RRDVIDALLSENDGLTQSWIVHSGASFHVTPYVECFASNHAGKYDKVYLGDNHACDIEGM 409
           R +V+DALL   D     W++ SGASFH TPY E   +  AG + KVYL D    D+ G+
Sbjct: 267 REEVLDALLLAVDSPLDDWVLDSGASFHTTPYREIIQNYVAGDFGKVYLADGSTLDVVGI 326

Query: 410 GN 415
           G+
Sbjct: 327 GD 328


>tr|A5ATI4|A5ATI4_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_034720 PE=4 SV=1
          Length = 1172

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 27/60 (45%), Positives = 36/60 (60%)
 Frame = +2

Query: 236 DVIDALLSENDGLTQSWIVHSGASFHVTPYVECFASNHAGKYDKVYLGDNHACDIEGMGN 415
           +V DALL   D     W++ SGASFH TP+ E   +  AG + KVYL D  A D+ G+G+
Sbjct: 270 EVXDALLLAVDSPLDDWVLDSGASFHTTPHREIIQNYXAGDFGKVYLXDGSALDVVGLGB 329


>tr|A5BKD2|A5BKD2_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_038889 PE=4 SV=1
          Length = 925

 Score = 57.8 bits (138), Expect = 3e-07
 Identities = 28/60 (46%), Positives = 36/60 (60%)
 Frame = +2

Query: 236 DVIDALLSENDGLTQSWIVHSGASFHVTPYVECFASNHAGKYDKVYLGDNHACDIEGMGN 415
           DV DALL   D     W++ SGASFH TP+ E   +  AG + KVYL D  A D+ G+G+
Sbjct: 271 DVQDALLFAIDSPLDDWVLDSGASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGD 330


>tr|A5ADV4|A5ADV4_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_028182 PE=4 SV=1
          Length = 815

 Score = 57.8 bits (138), Expect = 3e-07
 Identities = 29/78 (37%), Positives = 42/78 (53%)
 Frame = +2

Query: 182 CPSDRVVANAENMLISRRDVIDALLSENDGLTQSWIVHSGASFHVTPYVECFASNHAGKY 361
           C S +     ++  +   +V DALL   D     W++ SGASFH TP+ E   +  AG +
Sbjct: 252 CKSPKKKNEDDSANVVTEEVQDALLLAVDSPLDDWVLDSGASFHTTPHREIIQNYVAGDF 311

Query: 362 DKVYLGDNHACDIEGMGN 415
            KVYL D  A D+ G+G+
Sbjct: 312 GKVYLADGSALDVVGLGD 329


>tr|A5AQN2|A5AQN2_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_036909 PE=4 SV=1
          Length = 1032

 Score = 57.4 bits (137), Expect = 4e-07
 Identities = 31/67 (46%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
 Frame = +2

Query: 224 ISRRD---VIDALLSENDGLTQSWIVHSGASFHVTPYVECFASNHAGKYDKVYLGDNHAC 394
           I RRD   V DALL   D     W++ SGASFH TP+ E   +  AG + KVYL D  A 
Sbjct: 186 IRRRDAEEVQDALLLAVDSPLDDWVLDSGASFHTTPHREIIQNYVAGDFGKVYLADGSAL 245

Query: 395 DIEGMGN 415
           D+ G+G+
Sbjct: 246 DVVGLGD 252


>tr|A5AMG2|A5AMG2_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_018063 PE=4 SV=1
          Length = 1294

 Score = 57.4 bits (137), Expect = 4e-07
 Identities = 27/60 (45%), Positives = 35/60 (58%)
 Frame = +2

Query: 236 DVIDALLSENDGLTQSWIVHSGASFHVTPYVECFASNHAGKYDKVYLGDNHACDIEGMGN 415
           +V DALL   D     W++ SGASFH TP+ E   +   G + KVYL D  A D+ G+GN
Sbjct: 232 EVQDALLLAVDSPLDDWVLDSGASFHTTPHREIIQNYXVGDFGKVYLADGSALDVVGLGN 291


>tr|A5C844|A5C844_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_044399 PE=4 SV=1
          Length = 1264

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 27/60 (45%), Positives = 36/60 (60%)
 Frame = +2

Query: 236 DVIDALLSENDGLTQSWIVHSGASFHVTPYVECFASNHAGKYDKVYLGDNHACDIEGMGN 415
           +V DALL   D     W++ SGASFH TP+ E   +  AG + KVYL D  A D+ G+G+
Sbjct: 270 EVXDALLLAVDSPLDDWVLDSGASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGD 329


>tr|A5AS37|A5AS37_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_032634 PE=4 SV=1
          Length = 1298

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 27/60 (45%), Positives = 36/60 (60%)
 Frame = +2

Query: 236 DVIDALLSENDGLTQSWIVHSGASFHVTPYVECFASNHAGKYDKVYLGDNHACDIEGMGN 415
           +V DALL   D     W++ SGASFH TP+ E   +  AG + KVYL D  A D+ G+G+
Sbjct: 270 EVXDALLLAVDSPLDDWVLDSGASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGD 329


>tr|A5B6M5|A5B6M5_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_035792 PE=4 SV=1
          Length = 1179

 Score = 56.6 bits (135), Expect = 6e-07
 Identities = 27/60 (45%), Positives = 35/60 (58%)
 Frame = +2

Query: 236 DVIDALLSENDGLTQSWIVHSGASFHVTPYVECFASNHAGKYDKVYLGDNHACDIEGMGN 415
           +V DALL   D     W++ SGASFH TP+ E   +   G + KVYL D  A D+ G+GN
Sbjct: 270 EVQDALLLAVDSPLDDWVLDSGASFHTTPHREIIQNYVVGDFGKVYLADGSALDVVGLGN 329


>tr|A7R7G1|A7R7G1_VITVI Chromosome undetermined scaffold_1754, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00009987001 PE=4 SV=1
          Length = 466

 Score = 56.2 bits (134), Expect = 8e-07
 Identities = 27/60 (45%), Positives = 36/60 (60%)
 Frame = +2

Query: 236 DVIDALLSENDGLTQSWIVHSGASFHVTPYVECFASNHAGKYDKVYLGDNHACDIEGMGN 415
           +V DALL   D     W++ SGASFH TP+ E   +  AG + KVYL D  A D+ G+G+
Sbjct: 210 EVQDALLLTVDSPLDDWVLDSGASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGD 269