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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920163
Clone id YMU001_000133_G08
Library
Length 372
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000133_G08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AAAAATGGTGGAAGTTTTCTCGTATGCATGTGCCTTGGGGAGTTTACGATGGCTCTGGCA
ATGAGGAGACACTTTAAGGAAGAAAGGAGCATATTGTGAAAGGGTGTGATGGATGAGGAA
TTCACAGCTCCAAAAGTGTATCTCTGTTTTGCAGAATTAGTTTGGACCTTGTCCCATCGA
AGGTTGGCTGATTCTCCCGATTTGAGTTTCTCGAGCTTGCTTAATTTTATTGGTCGTGGT
TTTAACCTTTTGGTCTCATGCTCATCGCTGAATGCAATGGCTGGGCTGCCGTTGTGGCAT
GCAGAATCCATGTCGTACATAGAAAGACATTCATGGTATTCAACCTTGTTATGTGGTGTT
GATTTTCCACAT
■■Homology search results ■■ -
sp_hit_id Q28738
Definition sp|Q28738|SCNNG_RABIT Amiloride-sensitive sodium channel subunit gamma OS=Oryctolagus cuniculus
Align length 56
Score (bit) 32.0
E-value 0.98
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920163|Adiantum capillus-veneris mRNA, clone:
YMU001_000133_G08.
         (372 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q28738|SCNNG_RABIT Amiloride-sensitive sodium channel subunit...    32   0.98 
sp|P37091|SCNNG_RAT Amiloride-sensitive sodium channel subunit g...    30   3.7  
sp|O13263|SCNNH_XENLA Amiloride-sensitive sodium channel subunit...    30   4.9  
sp|Q9P7C0|YKU5_SCHPO Uncharacterized WD repeat-containing protei...    29   6.3  
sp|Q9WU39|SCNNG_MOUSE Amiloride-sensitive sodium channel subunit...    29   6.3  
sp|P51170|SCNNG_HUMAN Amiloride-sensitive sodium channel subunit...    29   6.3  
sp|A6KWM0|GLAB1_BACV8 Alpha-1,3-galactosidase B OS=Bacteroides v...    29   6.4  
sp|P51171|SCNNG_XENLA Amiloride-sensitive sodium channel subunit...    29   8.3  

>sp|Q28738|SCNNG_RABIT Amiloride-sensitive sodium channel subunit
           gamma OS=Oryctolagus cuniculus GN=SCNN1G PE=2 SV=2
          Length = 653

 Score = 32.0 bits (71), Expect = 0.98
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +1

Query: 169 LSHRRLADSPDLSFSSLLNFIGRGFNLLVSCSSLNAMAGLPLWHAESMSYIERHSW 336
           L+ R + +SP  S   LL+  G    L +SCS +  +  + ++  +S+S + R  W
Sbjct: 515 LNQRSIMESPANSIEMLLSNFGGQLGLWMSCSVVCVIEIIEVFFIDSLSIVTRRQW 570


>sp|P37091|SCNNG_RAT Amiloride-sensitive sodium channel subunit
           gamma OS=Rattus norvegicus GN=Scnn1g PE=1 SV=2
          Length = 650

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +1

Query: 169 LSHRRLADSPDLSFSSLLNFIGRGFNLLVSCSSLNAMAGLPLWHAESMSYIERHSWY 339
           L+ R + +SP  S   LL+  G    L +SCS +  +  + ++  +  S I R  W+
Sbjct: 512 LNQRSIMESPANSIEMLLSNFGGQLGLWMSCSVVCVIEIIEVFFIDFFSIIARRQWH 568


>sp|O13263|SCNNH_XENLA Amiloride-sensitive sodium channel subunit
           gamma-2 OS=Xenopus laevis GN=scnn1g-B PE=2 SV=1
          Length = 663

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 15/57 (26%), Positives = 30/57 (52%)
 Frame = +1

Query: 169 LSHRRLADSPDLSFSSLLNFIGRGFNLLVSCSSLNAMAGLPLWHAESMSYIERHSWY 339
           L+ R +++SP  +  +LL+  G    L +SCS +  +  + ++  +S   I R  W+
Sbjct: 514 LNSRSISESPTYNIVTLLSNFGGQLGLWMSCSMVCGLEIVEVFFIDSFWVILRQKWH 570


>sp|Q9P7C0|YKU5_SCHPO Uncharacterized WD repeat-containing protein
           C2E1P5.05 OS=Schizosaccharomyces pombe GN=SPAC2E1P5.05
           PE=2 SV=1
          Length = 524

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +1

Query: 235 RGFNLLVSCSSLNAMAGLPLWHAESMSYIERHSWYSTLLCGVD 363
           RG N + SCS   A   + +W  + MSYIE    +  ++ GVD
Sbjct: 260 RGTNEMFSCS---ADRSIKVWSLDQMSYIETLFGHQDVIFGVD 299


>sp|Q9WU39|SCNNG_MOUSE Amiloride-sensitive sodium channel subunit
           gamma OS=Mus musculus GN=Scnn1g PE=1 SV=1
          Length = 655

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = +1

Query: 169 LSHRRLADSPDLSFSSLLNFIGRGFNLLVSCSSLNAMAGLPLWHAESMSYIERHSW 336
           L+ R + +SP  S   LL+  G    L +SCS +  +  + ++  +  S I R  W
Sbjct: 517 LNQRSIMESPANSIEMLLSNFGGQLGLWMSCSVVCVIEIIEVFFIDFFSIIARRQW 572


>sp|P51170|SCNNG_HUMAN Amiloride-sensitive sodium channel subunit
           gamma OS=Homo sapiens GN=SCNN1G PE=1 SV=4
          Length = 649

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = +1

Query: 169 LSHRRLADSPDLSFSSLLNFIGRGFNLLVSCSSLNAMAGLPLWHAESMSYIERHSW 336
           L+ R + +SP  S   LL+  G    L +SCS +  +  + ++  +  S I R  W
Sbjct: 511 LNQRSIMESPANSIEMLLSNFGGQLGLWMSCSVVCVIEIIEVFFIDFFSIIARRQW 566


>sp|A6KWM0|GLAB1_BACV8 Alpha-1,3-galactosidase B OS=Bacteroides
           vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154)
           GN=glaB1 PE=3 SV=1
          Length = 592

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 255 LMLIAECNGWAAVVACRIHVVHRKTFMV 338
           ++L  +CNGW    ACR HV+ RK   V
Sbjct: 470 ILLCGDCNGWFETGACR-HVIIRKNRFV 496


>sp|P51171|SCNNG_XENLA Amiloride-sensitive sodium channel subunit
           gamma OS=Xenopus laevis GN=scnn1g-A PE=2 SV=1
          Length = 660

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 14/56 (25%), Positives = 29/56 (51%)
 Frame = +1

Query: 169 LSHRRLADSPDLSFSSLLNFIGRGFNLLVSCSSLNAMAGLPLWHAESMSYIERHSW 336
           L+ R +++SP  +  +LL+  G    L +SCS +  +  + ++  +S   + R  W
Sbjct: 514 LNSRSISESPTYNIVTLLSNFGGQLGLWMSCSMICVLEIIEVFFIDSFWVVLRQRW 569
tr_hit_id A0Z2H8
Definition tr|A0Z2H8|A0Z2H8_9GAMM Putative molybdenum ABC transporter, ATP-binding protein ModF OS=marine gamma proteobacterium HTCC2080
Align length 45
Score (bit) 33.5
E-value 5.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920163|Adiantum capillus-veneris mRNA, clone:
YMU001_000133_G08.
         (372 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A0Z2H8|A0Z2H8_9GAMM Putative molybdenum ABC transporter, ATP-...    33   5.4  
tr|A3XXS6|A3XXS6_9VIBR Precorrin-2 C-20 methlytransferase OS=Vib...    33   7.1  
tr|Q4Q2Z7|Q4Q2Z7_LEIMA Putative uncharacterized protein OS=Leish...    33   9.2  

>tr|A0Z2H8|A0Z2H8_9GAMM Putative molybdenum ABC transporter,
           ATP-binding protein ModF OS=marine gamma proteobacterium
           HTCC2080 GN=MGP2080_02715 PE=3 SV=1
          Length = 470

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -2

Query: 170 KVQTNSAKQRYTFGAVNSSSITPFHNMLLSSLKCLLIARAIVNSP 36
           +VQ   AKQ      +   +  PFH M     + +LIARA+V SP
Sbjct: 360 EVQVKIAKQWLQAAGLREHATEPFHTMSYGEQRLVLIARALVKSP 404


>tr|A3XXS6|A3XXS6_9VIBR Precorrin-2 C-20 methlytransferase OS=Vibrio
           sp. MED222 GN=MED222_22486 PE=4 SV=1
          Length = 276

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = -3

Query: 352 ITRLNTMNVFLCTTWILHATTAAQPLHS 269
           IT+L +MN+  C T++ HATT  Q L+S
Sbjct: 191 ITQLESMNMLDCATYVSHATTEKQELYS 218


>tr|Q4Q2Z7|Q4Q2Z7_LEIMA Putative uncharacterized protein
           OS=Leishmania major GN=LmjF34.2040 PE=4 SV=1
          Length = 416

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -2

Query: 371 CGKSTPHNKVEYHECLSMYDMDSACHNGSPAIAFSDEHETKR 246
           CG    +N    H+C     +D++CH  SP   FS  H ++R
Sbjct: 247 CGAIKNNNSSIEHKCFEPLQLDASCHLFSPLQRFSSVHTSQR 288