BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920184|Adiantum capillus-veneris mRNA, clone:
YMU001_000134_A08.
         (470 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q2H679|MRH4_CHAGB ATP-dependent RNA helicase MRH4, mitochondr...    30   6.9  
sp|Q3SRR6|TRMFO_NITWN Methylenetetrahydrofolate--tRNA-(uracil-5-...    29   9.1  

>sp|Q2H679|MRH4_CHAGB ATP-dependent RNA helicase MRH4, mitochondrial
           OS=Chaetomium globosum GN=MRH4 PE=3 SV=1
          Length = 576

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = -3

Query: 309 PTAKFSTQVKTDEKQNYMK*LTNGASAGSS*ILWSTYSRAAPPVWRVITLPGDEV*SAAS 130
           PT++   QV    K+N+ +      +A +    WS   R   P WR++TL    V + +S
Sbjct: 277 PTSELVDQVLAASKKNFPRGQDQTTAAST----WSLPPRIFSPTWRIVTLISSRVCTTSS 332


>sp|Q3SRR6|TRMFO_NITWN
           Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase trmFO OS=Nitrobacter winogradskyi
           (strain Nb-255 / ATCC 25391) GN=trmFO PE=3 SV=1
          Length = 477

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 16/56 (28%), Positives = 24/56 (42%)
 Frame = +2

Query: 38  TSTKASTIAVDITIGGMRNSDFSWNPAAQVLDAADHTSSPGKVMTRHTGGAAREYV 205
           T  ++S   V I   G+  S+ +W  AAQ +    H   P ++   H  G   E V
Sbjct: 2   TQFESSRATVHIVGAGLAGSEAAWQVAAQGVRVVLHEMRPHRMTAAHRTGGLAELV 57

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920184|Adiantum capillus-veneris mRNA, clone:
YMU001_000134_A08.
         (470 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SWJ4|A9SWJ4_PHYPA Predicted protein OS=Physcomitrella paten...    55   2e-08
tr|Q47PB9|Q47PB9_THEFY Cellulose-binding, family II, bacterial t...    35   2.5  

>tr|A9SWJ4|A9SWJ4_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_234250 PE=4 SV=1
          Length = 1560

 Score = 55.1 bits (131), Expect(2) = 2e-08
 Identities = 32/86 (37%), Positives = 52/86 (60%), Gaps = 4/86 (4%)
 Frame = +2

Query: 2    KCLCRPFYSSANTSTKASTIAVDITIGGMRNSDFSWNPAAQVLDAAD---HTSSPGKVMT 172
            K  CRP  +S + +  A  + +DITIGG + ++ +   A+Q  + ++   H  S  ++  
Sbjct: 1158 KLQCRPLVTSLDPA--APVVKIDITIGGKKTNEEAVATASQSSEGSETSRHVDSQFELAR 1215

Query: 173  R-HTGGAAREYVLHKIQELPALAPLV 247
            + H G AAREYV+ ++Q+ PALAPLV
Sbjct: 1216 KFHNGAAAREYVIKRLQQQPALAPLV 1241



 Score = 26.2 bits (56), Expect(2) = 2e-08
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = +3

Query: 321  VLLLKSFLHHKNLSNVYXXXXXXXXXXXXXXXYLEVCP 434
            VLLLKS+L  K L +VY               YLE  P
Sbjct: 1241 VLLLKSYLQSKGLKDVYTGGLGSFSLTIMLVFYLERVP 1278


>tr|Q47PB9|Q47PB9_THEFY Cellulose-binding, family II, bacterial
           type:Fibronectin, type III OS=Thermobifida fusca (strain
           YX) GN=Tfu_1665 PE=3 SV=1
          Length = 438

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
 Frame = +2

Query: 23  YSSANTSTKASTIAVDITIGGMR-NSDFSWNPAAQVLDAADHTSSPGKVMTRHTGGA 190
           Y++AN    A+T    +T+ G+  N+D+S    A+  DAA +TSSP   +T ++G A
Sbjct: 276 YNAANDELLATTRTTSVTLTGLTPNTDYSIYVVAR--DAAGNTSSPSATLTFNSGDA 330