NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920186
Clone id YMU001_000134_A11
Library
Length 504
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000134_A11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTTTTTTTATAACTCTAAAGTCAAATTCCTTATGCAAAACGAGCACGGGGCACAAATCTA
TGCTGACCCATGGGAAGAACAGTATTGATGTACTTCCACTGAAATCCCAGCCCCAATTTT
TTTGAATGGAAACCCATAATAATATTTAACATACATCATAACTAGGCAAATGCAATAAAA
TTGCACTCAACTCCAATTGCAGTGAAATTGAAGTATTAAAACTCGGCCTTAGAAGGGCTG
CAATGAACCTCCCATCTCATCAAAACAGACATCAATAAGCACAACATCACATTTGGGTAA
TCATCTTCACCCTCAATGCTTGCTGGTAATGCAGATCTTCTTCTCAGGACTCAAGTCAAG
TGTGGTTACGGATGGTGTGATATATCGCCGGGCCTGCAATGGCAGACCACCCTTGGAATC
GGCAATTGGACATCCATTCAGCTGATCTTCAGTACTCTTAGGCTTTACCTGCTGGCTAAC
TTTCTCTGTAGCGTTCTCCTGTTG
■■Homology search results ■■ -
sp_hit_id P08720
Definition sp|P08720|NODI_RHILV Nod factor export ATP-binding protein I OS=Rhizobium leguminosarum bv. viciae
Align length 47
Score (bit) 31.6
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920186|Adiantum capillus-veneris mRNA, clone:
YMU001_000134_A11.
         (504 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P08720|NODI_RHILV Nod factor export ATP-binding protein I OS=...    32   2.2  
sp|Q1M7W6|NODI_RHIL3 Nod factor export ATP-binding protein I OS=...    32   2.2  
sp|P50332|NODI_RHIGA Nod factor export ATP-binding protein I OS=...    30   4.9  
sp|O14057|GUAD_SCHPO Probable guanine deaminase OS=Schizosacchar...    30   6.5  
sp|Q68FE8|Z280D_MOUSE Zinc finger protein 280D OS=Mus musculus G...    30   8.4  

>sp|P08720|NODI_RHILV Nod factor export ATP-binding protein I
           OS=Rhizobium leguminosarum bv. viciae GN=nodI PE=3 SV=1
          Length = 311

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -1

Query: 465 KPKSTEDQLNGCPIADSKGGLPLQARRYITPSVTTLDLSPEKKICIT 325
           +P +  ++  GCP+ +  GG P +    I P+   L++S E   C T
Sbjct: 226 RPHALIEEQIGCPVIEIYGGDPQELSLLIRPNARRLEISGETLFCYT 272


>sp|Q1M7W6|NODI_RHIL3 Nod factor export ATP-binding protein I
           OS=Rhizobium leguminosarum bv. viciae (strain 3841)
           GN=nodI PE=3 SV=2
          Length = 311

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -1

Query: 465 KPKSTEDQLNGCPIADSKGGLPLQARRYITPSVTTLDLSPEKKICIT 325
           +P +  ++  GCP+ +  GG P +    I P+   L++S E   C T
Sbjct: 226 RPHALIEEQIGCPVIEIYGGDPQELSLLIRPNARRLEISGETLFCYT 272


>sp|P50332|NODI_RHIGA Nod factor export ATP-binding protein I
           OS=Rhizobium galegae GN=nodI PE=3 SV=1
          Length = 347

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -1

Query: 462 PKSTEDQLNGCPIADSKGGLPLQARRYITPSVTTLDLSPEKKICIT 325
           P S  + + GCP+ +  GG P +    + P V  ++ S E   C T
Sbjct: 263 PLSLIEDIIGCPVIEVYGGNPDELSLIVRPHVDRIETSGETLFCYT 308


>sp|O14057|GUAD_SCHPO Probable guanine deaminase
           OS=Schizosaccharomyces pombe GN=SPCC1672.03c PE=2 SV=1
          Length = 527

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = -1

Query: 504 QQENATEKVSQQVKPKSTEDQLNGCPIADSKGGLPLQARRYITPSVTTL--DLSPEKK 337
           ++E  T  ++ +  P  TED L+GC     K  LP+Q       S   L  +L PE+K
Sbjct: 201 KREMVTPIITPRFAPSCTEDLLSGCGELAEKHNLPIQTHISENTSEIELVKELFPERK 258


>sp|Q68FE8|Z280D_MOUSE Zinc finger protein 280D OS=Mus musculus
           GN=Znf280d PE=2 SV=1
          Length = 974

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
 Frame = -1

Query: 504 QQENATEKVSQQVKPKSTEDQLNGCPIADSKGGLPLQARRYITPSVT----TLDLSPEKK 337
           + ++ T+     VKPK  E    G  +       PLQ+   +TPS++    TL LSP + 
Sbjct: 502 KMDHKTQHHRTFVKPKQLEGLPPGTKVTIRASVGPLQSGSSVTPSISPSTSTLQLSPPEP 561

Query: 336 ICITSKH 316
             +T+K+
Sbjct: 562 DNVTAKN 568
tr_hit_id A5FM58
Definition tr|A5FM58|A5FM58_FLAJ1 Response regulator receiver protein OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101)
Align length 84
Score (bit) 35.4
E-value 1.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920186|Adiantum capillus-veneris mRNA, clone:
YMU001_000134_A11.
         (504 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5FM58|A5FM58_FLAJ1 Response regulator receiver protein OS=Fl...    35   1.5  
tr|A7CQJ0|A7CQJ0_9BACT Putative uncharacterized protein OS=Opitu...    35   2.6  
tr|Q9FNH7|Q9FNH7_ARATH Gb|AAD29059.1 OS=Arabidopsis thaliana GN=...    34   3.4  
tr|Q6NKX5|Q6NKX5_ARATH At5g06310 (Telomere end binding protein-l...    34   3.4  
tr|Q4W6W7|Q4W6W7_ARATH Telomere end binding pretein-like protein...    34   3.4  
tr|A1CX41|A1CX41_NEOFI Putative uncharacterized protein OS=Neosa...    33   7.6  
tr|A6GTT6|A6GTT6_9BURK DNA polymerase I OS=Limnobacter sp. MED10...    33   9.9  

>tr|A5FM58|A5FM58_FLAJ1 Response regulator receiver protein
           OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM
           2064 / UW101) GN=Fjoh_0682 PE=3 SV=1
          Length = 246

 Score = 35.4 bits (80), Expect = 1.5
 Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
 Frame = -3

Query: 244 IAALLRPSFNTSI---SLQLELSAILLHLPSYDVC*ILLWVSIQKNWGWDFSGSTSILFF 74
           + A ++ SF   I   ++ LE++AI L    Y +     + S   N G+DFS   SI+F 
Sbjct: 59  LLAFIQKSFYKRIGKWNISLEITAIFLFYVLYLIGVFAFYKSPILNGGYDFSEFFSIIFI 118

Query: 73  PWVSIDLCPVLVLHKEFDFRVIKK 2
             V++ L PV++L + +  ++I K
Sbjct: 119 K-VALILTPVIILARRYLIKLIPK 141


>tr|A7CQJ0|A7CQJ0_9BACT Putative uncharacterized protein
           OS=Opitutaceae bacterium TAV2 GN=ObacDRAFT_1303 PE=3
           SV=1
          Length = 457

 Score = 34.7 bits (78), Expect = 2.6
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = +3

Query: 183 ALNSNCSEIEVLKLGLRRAAMNLPSHQNR 269
           AL ++C ++++L +   RAA+NLP H NR
Sbjct: 212 ALKTHCPDVDILGINAYRAALNLPDHLNR 240


>tr|Q9FNH7|Q9FNH7_ARATH Gb|AAD29059.1 OS=Arabidopsis thaliana
           GN=At5g06310 PE=4 SV=1
          Length = 463

 Score = 34.3 bits (77), Expect = 3.4
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +3

Query: 9   ITLKSNSLCKTSTGHKSMLTHGKNSIDVLPLKSQPQFF*METHNN 143
           I  K  +LC  +T     L +GK+S+D +P +S P+F   E   N
Sbjct: 90  INRKITALCNETTSSSFALFNGKHSVDSIPYQSSPKFLMREQDKN 134


>tr|Q6NKX5|Q6NKX5_ARATH At5g06310 (Telomere end binding protein-like
           protein) (Protection of telomeres 2 protein) (Putative
           uncharacterized protein At5g06310) OS=Arabidopsis
           thaliana GN=At5g06310 PE=1 SV=1
          Length = 454

 Score = 34.3 bits (77), Expect = 3.4
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +3

Query: 9   ITLKSNSLCKTSTGHKSMLTHGKNSIDVLPLKSQPQFF*METHNN 143
           I  K  +LC  +T     L +GK+S+D +P +S P+F   E   N
Sbjct: 90  INRKITALCNETTSSSFALFNGKHSVDSIPYQSSPKFLMREQDKN 134


>tr|Q4W6W7|Q4W6W7_ARATH Telomere end binding pretein-like protein
           OS=Arabidopsis thaliana GN=At5g06310 PE=4 SV=1
          Length = 179

 Score = 34.3 bits (77), Expect = 3.4
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +3

Query: 9   ITLKSNSLCKTSTGHKSMLTHGKNSIDVLPLKSQPQFF*METHNN 143
           I  K  +LC  +T     L +GK+S+D +P +S P+F   E   N
Sbjct: 90  INRKITALCNETTSSSFALFNGKHSVDSIPYQSSPKFLMREQDKN 134


>tr|A1CX41|A1CX41_NEOFI Putative uncharacterized protein
           OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
           NRRL 181) GN=NFIA_106820 PE=4 SV=1
          Length = 458

 Score = 33.1 bits (74), Expect = 7.6
 Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
 Frame = -3

Query: 415 QGWSAIAGPAIYHTIRNHT*LES*E----EDLHYQQALRVKMITQM*CCAY*CLF**DGR 248
           +GW+    P I H IR +   +S E    + ++Y   +R++ +              DGR
Sbjct: 257 EGWNE---PGISHVIRLNKFAQSPELPLGQTINYLSTIRLRTL--------------DGR 299

Query: 247 FIAALLRPSFNTSISLQLELSAILLHLPSYDVC*ILLWVSIQKNWGWDFSGS 92
           ++A    P  NT++SL       L++ P+ +   ++       +W W FSG+
Sbjct: 300 YVAVDTNPPGNTNLSL-----LTLVNAPADNTRFLIRHYHKDSSWEWAFSGN 346


>tr|A6GTT6|A6GTT6_9BURK DNA polymerase I OS=Limnobacter sp. MED105
           GN=LMED105_15209 PE=3 SV=1
          Length = 927

 Score = 32.7 bits (73), Expect = 9.9
 Identities = 17/38 (44%), Positives = 23/38 (60%)
 Frame = +3

Query: 330 CRSSSQDSSQVWLRMV*YIAGPAMADHPWNRQLDIHSA 443
           C   S D SQ+ LR++ +I+G     H +N  LDIHSA
Sbjct: 698 CVLVSADYSQIELRIMAHISGDEALIHAFNEGLDIHSA 735