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NBDC - LSDB Archive
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BP920189
Clone id YMU001_000134_B02
Library
Length 553
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000134_B02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CAATAAGTACGTGAGACTACAAACAATTAGTAAAATTTTCTACACATCAAAAAAGCTGCA
ACGAATACAAAGATATTGTTGTCACTGCCCTGGCCAAAACTGATGGATCCCTATATGCTA
CTTGGTTTCTACTATGGGTTACTTACAACATTACCCGTGGGACCTTCGCAAATCCTATGT
GTGAGATCTTTTCTTTTGGGTGGGAATCTAAGTGGGCTAATTTCTATCAGTGGGTCGGTA
TTGGCACAACTAATAACTGCATCATCAATCTACTGCTCGCCAATTTATCTATTACTGCTA
AGGCCACATTTACTAACTATTGTGGCAATACCGTATACACTTCTCTTTTGTCTGGTAATC
AAGGATTTTCCAAATTATCAGATTTTGCGTCCCGTGACATCATTACGTGACTCACGAGTA
GCTAGATTATTTTTGATAAGTTTCTTTTTTCAAATATTGAACCCAATAATGTTACCAAAT
AGTGTGTTAACAAGACTGATTTATCTATACTTCTTCAGGTATAGCACCAATACAGTTTCT
ATGGTATCTACTT
■■Homology search results ■■ -
sp_hit_id Q85FG7
Definition sp|Q85FG7|YCF1_ADICA Putative membrane protein ycf1 OS=Adiantum capillus-veneris
Align length 163
Score (bit) 238.0
E-value 1.0e-62
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920189|Adiantum capillus-veneris mRNA, clone:
YMU001_000134_B02.
         (553 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q85FG7|YCF1_ADICA Putative membrane protein ycf1 OS=Adiantum ...   238   1e-62
sp|Q6YXP5|YCF1_PHYPA Putative membrane protein ycf1 OS=Physcomit...   120   3e-27
sp|Q85B66|YCF1A_ANTFO Putative membrane protein ycf1 N-terminal ...   117   3e-26
sp|P12221|YCF1A_MARPO Putative membrane protein ycf1 N-terminal ...   110   6e-24
sp|Q8WHX1|YCF1_PSINU Putative membrane protein ycf1 OS=Psilotum ...   107   5e-23
sp|Q5SCY7|YCF1_HUPLU Putative membrane protein ycf1 OS=Huperzia ...    87   4e-17
sp|Q85WU2|YCF1_PINKO Putative protein ycf1 OS=Pinus koraiensis P...    87   5e-17
sp|P41647|YCF1_PINTH Putative membrane protein ycf1 OS=Pinus thu...    78   3e-14
sp|Q32RK5|YCF1_ZYGCR Putative membrane protein ycf1 OS=Zygnema c...    72   1e-12
sp|Q2PMP0|YCF1_SOYBN Putative membrane protein ycf1 OS=Glycine m...    68   3e-11
sp|Q9BBN6|YCF1_LOTJA Putative membrane protein ycf1 OS=Lotus jap...    66   1e-10
sp|A4GGF4|YCF1_PHAVU Putative membrane protein ycf1 OS=Phaseolus...    64   5e-10
sp|A8W3G9|YCF1_CUSEX Putative membrane protein ycf1 OS=Cuscuta e...    64   5e-10
sp|Q8M9T2|YCF1_CHAGL Putative membrane protein ycf1 OS=Chaetosph...    64   6e-10
sp|A9L9E2|YCF1_LEMMI Putative membrane protein ycf1 OS=Lemna min...    61   4e-09
sp|A7M9B2|YCF1_CUSRE Putative membrane protein ycf1 OS=Cuscuta r...    60   7e-09
sp|Q1KXR1|YCF1_HELAN Putative membrane protein ycf1 OS=Helianthu...    58   3e-08
sp|A1XGT3|YCF1_RANMC Putative membrane protein ycf1 OS=Ranunculu...    56   1e-07
sp|Q06R72|YCF1_JASNU Putative membrane protein ycf1 OS=Jasminum ...    56   1e-07
sp|Q1KXH4|YCF1_LACSA Putative membrane protein ycf1 OS=Lactuca s...    55   2e-07
sp|A6MMQ5|YCF1_DIOEL Putative membrane protein ycf1 OS=Dioscorea...    55   2e-07
sp|Q7YJS6|YCF1_CALFG Putative membrane protein ycf1 OS=Calycanth...    55   2e-07
sp|Q0G9Q4|YCF1_DAUCA Putative membrane protein ycf1 OS=Daucus ca...    55   2e-07
sp|Q2L951|YCF1_GOSHI Putative membrane protein ycf1 OS=Gossypium...    54   7e-07
sp|A0ZZ93|YCF1_GOSBA Putative membrane protein ycf1 OS=Gossypium...    54   7e-07
sp|Q3V4X6|YCF1_ACOCL Putative membrane protein ycf1 OS=Acorus ca...    54   7e-07
sp|A9LYF8|YCF1_ACOAM Putative membrane protein ycf1 OS=Acorus am...    54   7e-07
sp|Q68RU8|YCF1_PANGI Putative membrane protein ycf1 OS=Panax gin...    53   9e-07
sp|Q0ZIW0|YCF1_VITVI Putative membrane protein ycf1 OS=Vitis vin...    53   1e-06
sp|A4QLG7|YCF1_LEPVR Putative membrane protein ycf1 OS=Lepidium ...    52   1e-06

>sp|Q85FG7|YCF1_ADICA Putative membrane protein ycf1 OS=Adiantum
           capillus-veneris GN=ycf1 PE=2 SV=2
          Length = 1691

 Score =  238 bits (608), Expect = 1e-62
 Identities = 126/163 (77%), Positives = 126/163 (77%)
 Frame = +1

Query: 64  NTKILLSLPWPKLMDPYMXXXXXXXXXXXXPVGPSQILCVRSFXXXXXXXXXXXXXXXVL 243
           NTKILLSLPWPKLMDPYM            PVGPSQILCVRSF               VL
Sbjct: 2   NTKILLSLPWPKLMDPYMLLGFYYGLLTTLPVGPSQILCVRSFLLGGNLSGLISISGSVL 61

Query: 244 AQLITASSIYCSPIYXXXXXXXXXTIVAIPYTLLFCLVIKDFPNYQILRPVTSLRDSRVA 423
           AQLITASSIYCSPIY         TIVAIPYTLLFCLVIKDFPNYQILRPVTSLRDSRVA
Sbjct: 62  AQLITASSIYCSPIYLLLLRPHLLTIVAIPYTLLFCLVIKDFPNYQILRPVTSLRDSRVA 121

Query: 424 RLFLISFFFQILNPIMLPNSVLTRLIYLYFFRYSTNTVSMVST 552
           RLFLISFFFQILNPIMLPNSVLTRLIYLYFFRYSTNTV MVST
Sbjct: 122 RLFLISFFFQILNPIMLPNSVLTRLIYLYFFRYSTNTVFMVST 164


>sp|Q6YXP5|YCF1_PHYPA Putative membrane protein ycf1
           OS=Physcomitrella patens GN=ycf1 PE=3 SV=1
          Length = 1603

 Score =  120 bits (302), Expect = 3e-27
 Identities = 63/169 (37%), Positives = 93/169 (55%), Gaps = 6/169 (3%)
 Frame = +1

Query: 61  TNTKILLSLPWPKLMD------PYMXXXXXXXXXXXXPVGPSQILCVRSFXXXXXXXXXX 222
           TNT +  S+ W  ++       P +            P+GPSQIL +R+F          
Sbjct: 3   TNTPLQFSVLWASILSWINISSPLILFGLYYGFLTTLPIGPSQILSIRAFLLEGNLSGTV 62

Query: 223 XXXXXVLAQLITASSIYCSPIYXXXXXXXXXTIVAIPYTLLFCLVIKDFPNYQILRPVTS 402
                +L QLI   SIY SP+Y         T++ +PY L +   IKD  +YQ LRP+ S
Sbjct: 63  AVSGLILGQLIIFLSIYYSPLYTLLLKPHTVTLLVLPYLLFYWYRIKDLLDYQSLRPINS 122

Query: 403 LRDSRVARLFLISFFFQILNPIMLPNSVLTRLIYLYFFRYSTNTVSMVS 549
           ++DSR+ ++F  SF FQ+LNP++LP+ +L RLI L+FFRYS N + ++S
Sbjct: 123 IKDSRIYKIFFDSFIFQLLNPVLLPSPILVRLINLFFFRYSNNFLFVLS 171


>sp|Q85B66|YCF1A_ANTFO Putative membrane protein ycf1 N-terminal
           part OS=Anthoceros formosae GN=ycf1 PE=2 SV=1
          Length = 1031

 Score =  117 bits (294), Expect = 3e-26
 Identities = 61/155 (39%), Positives = 85/155 (54%)
 Frame = +1

Query: 85  LPWPKLMDPYMXXXXXXXXXXXXPVGPSQILCVRSFXXXXXXXXXXXXXXXVLAQLITAS 264
           L W  +  P +            P+GPSQIL +R+F                L QLI   
Sbjct: 17  LSWISISGPLILFGLYYGFSITLPMGPSQILSIRAFLLEGNLSGLMALGGSTLGQLIILI 76

Query: 265 SIYCSPIYXXXXXXXXXTIVAIPYTLLFCLVIKDFPNYQILRPVTSLRDSRVARLFLISF 444
           SI+ SP+Y         T++ +PY L +   IKD  +YQ LRP+TSL D+ + ++FL SF
Sbjct: 77  SIFYSPLYIMLLKPHAITLITLPYVLFYWYEIKDLSDYQPLRPITSLNDTGIIQIFLNSF 136

Query: 445 FFQILNPIMLPNSVLTRLIYLYFFRYSTNTVSMVS 549
            FQI NPI+LP+ VLTRL+ L+ FRYS N+  ++S
Sbjct: 137 LFQIFNPILLPSPVLTRLVKLFLFRYSHNSFFVIS 171


>sp|P12221|YCF1A_MARPO Putative membrane protein ycf1 N-terminal
           part OS=Marchantia polymorpha GN=ycf1 PE=5 SV=1
          Length = 1068

 Score =  110 bits (274), Expect = 6e-24
 Identities = 54/170 (31%), Positives = 93/170 (54%), Gaps = 6/170 (3%)
 Frame = +1

Query: 61  TNTKILLSLPWPKLMD------PYMXXXXXXXXXXXXPVGPSQILCVRSFXXXXXXXXXX 222
           T+  +LLS+ W  ++        +             P+GPSQ+L +R+F          
Sbjct: 3   TSIPLLLSVLWVPILSWINFSSTFFLFGIYYGFLTTLPIGPSQLLSIRAFLLEGNFSGIA 62

Query: 223 XXXXXVLAQLITASSIYCSPIYXXXXXXXXXTIVAIPYTLLFCLVIKDFPNYQILRPVTS 402
                +  QL+   SI+ SP+Y         T++ +PY L +   IKD  +YQ L+P+TS
Sbjct: 63  AVSGLITGQLLIFLSIFYSPLYVLLIKPHLLTLLVLPYILFYWYKIKDLIDYQSLKPITS 122

Query: 403 LRDSRVARLFLISFFFQILNPIMLPNSVLTRLIYLYFFRYSTNTVSMVST 552
           ++D+R++++F  SF FQ+ NP++LP+ VL RL+ ++ FRYS N + ++S+
Sbjct: 123 IKDTRISKIFFDSFIFQLFNPVVLPSPVLARLLNIFLFRYSNNFIFLLSS 172


>sp|Q8WHX1|YCF1_PSINU Putative membrane protein ycf1 OS=Psilotum
           nudum GN=ycf1 PE=3 SV=1
          Length = 1703

 Score =  107 bits (266), Expect = 5e-23
 Identities = 62/175 (35%), Positives = 85/175 (48%), Gaps = 4/175 (2%)
 Frame = +1

Query: 40  LHIKKAATNTKILLSL----PWPKLMDPYMXXXXXXXXXXXXPVGPSQILCVRSFXXXXX 207
           L++KK       L SL    PW   +   M            P+GPSQIL +R+F     
Sbjct: 5   LYMKKLKNLFLFLSSLCPVFPWISQISLVMPFGLYYGFLTALPIGPSQILSIRTFFLEGN 64

Query: 208 XXXXXXXXXXVLAQLITASSIYCSPIYXXXXXXXXXTIVAIPYTLLFCLVIKDFPNYQIL 387
                     ++ Q +   SIYCSP+Y         T++ IPY   +    K+   Y IL
Sbjct: 65  RSGIICILGSMMGQFVILLSIYCSPLYVMLVKPHLMTLLVIPYMFYYWYRTKNPSRYYIL 124

Query: 388 RPVTSLRDSRVARLFLISFFFQILNPIMLPNSVLTRLIYLYFFRYSTNTVSMVST 552
            P+ SL  +    L L SF FQ+LNPI+LPN VLTRL+ L+ FRYS+N   + S+
Sbjct: 125 HPIKSLTHAHTRNLLLDSFIFQLLNPILLPNPVLTRLLNLFLFRYSSNVFFLTSS 179


>sp|Q5SCY7|YCF1_HUPLU Putative membrane protein ycf1 OS=Huperzia
           lucidula GN=ycf1 PE=3 SV=2
          Length = 1658

 Score = 87.4 bits (215), Expect = 4e-17
 Identities = 50/131 (38%), Positives = 70/131 (53%)
 Frame = +1

Query: 154 PVGPSQILCVRSFXXXXXXXXXXXXXXXVLAQLITASSIYCSPIYXXXXXXXXXTIVAIP 333
           P+G SQIL +R+F               ++ QLIT  SIY  PIY         T++ +P
Sbjct: 39  PIGLSQILTIRAFLLGGNTGGTLAVSGSIMGQLITNLSIYYWPIYVMLLKPHAITLLVLP 98

Query: 334 YTLLFCLVIKDFPNYQILRPVTSLRDSRVARLFLISFFFQILNPIMLPNSVLTRLIYLYF 513
           Y L +    KD    Q   PV SL D++V ++FL SF   +LNP++LP+ V  R + L+ 
Sbjct: 99  YMLFYWYRTKDLLYDQPPNPVESLNDAQVRQIFLDSFILSLLNPVILPSPVFARSLNLFI 158

Query: 514 FRYSTNTVSMV 546
           FRYS N +S V
Sbjct: 159 FRYS-NKISFV 168


>sp|Q85WU2|YCF1_PINKO Putative protein ycf1 OS=Pinus koraiensis PE=3
           SV=2
          Length = 2046

 Score = 87.0 bits (214), Expect = 5e-17
 Identities = 51/157 (32%), Positives = 76/157 (48%), Gaps = 3/157 (1%)
 Frame = +1

Query: 91  WPKLMDPYMXXXXXXXXXXXXPVGPSQILCVRSFXXXXXXXXXXXXXXXVLAQLITASSI 270
           W ++  P +            P GPS+I  +RSF               +  QLI   S+
Sbjct: 15  WVEVSGPIILFGLYYGFIATLPFGPSKIYSMRSFFLGETLYGIIAISGSITGQLIVFLSM 74

Query: 271 YCSPIYXXXXXXXXXTIVAIPYTLLFCLVIKDFP---NYQILRPVTSLRDSRVARLFLIS 441
           Y SPIY         T++ IPYT  FC V +      + +   P+ S+++ ++  LF+  
Sbjct: 75  YYSPIYAALWKPHAITLLVIPYT--FCRVFRSLEKPSSPESTHPMNSIKNPKILSLFMGG 132

Query: 442 FFFQILNPIMLPNSVLTRLIYLYFFRYSTNTVSMVST 552
              Q+LNPI+L N VLTRL+ L+ FRYS N   M+S+
Sbjct: 133 LILQLLNPILLANPVLTRLVNLFLFRYSDNISFMISS 169


>sp|P41647|YCF1_PINTH Putative membrane protein ycf1 OS=Pinus
           thunbergii GN=ycf1 PE=3 SV=1
          Length = 1756

 Score = 78.2 bits (191), Expect = 3e-14
 Identities = 48/154 (31%), Positives = 69/154 (44%), Gaps = 1/154 (0%)
 Frame = +1

Query: 91  WPKLMDPYMXXXXXXXXXXXXPVGPSQILCVRSFXXXXXXXXXXXXXXXVLAQLITASSI 270
           W ++  P +            P GPS+I   RSF               +  QLI   S+
Sbjct: 15  WVEVSGPIIIFGLYYGFLATLPFGPSKIYSTRSFLLGKPGYGIIAISGSITGQLIGFLSM 74

Query: 271 YCSPIYXXXXXXXXXTIVAIPYTLLFCLVIKDFPNY-QILRPVTSLRDSRVARLFLISFF 447
           Y SPIY         T++ +PY       I D P+  +    + S+ + +   LF+    
Sbjct: 75  YYSPIYAALWKPYAITLLVVPYMFFRFFQIMDKPSSSESPHLMNSINNPKALSLFMDGLI 134

Query: 448 FQILNPIMLPNSVLTRLIYLYFFRYSTNTVSMVS 549
            Q+LNPI+L N VLTRL+ L+ FRYS N   M+S
Sbjct: 135 LQLLNPILLANPVLTRLVNLFLFRYSPNISFMIS 168


>sp|Q32RK5|YCF1_ZYGCR Putative membrane protein ycf1 OS=Zygnema
           circumcarinatum GN=ycf1 PE=3 SV=1
          Length = 1676

 Score = 72.4 bits (176), Expect = 1e-12
 Identities = 43/147 (29%), Positives = 73/147 (49%), Gaps = 14/147 (9%)
 Frame = +1

Query: 154 PVGPSQILCVRSFXXXXXXXXXXXXXXXVLAQLITAS-------------SIYCSPIYXX 294
           P+ PSQ++C+R+F                 + ++ A+             SIY  P+Y  
Sbjct: 40  PIAPSQLVCIRAFLLEGEGKESESPGTVAKSGILIAAISGLTVSQLAFFLSIYWPPLYMI 99

Query: 295 XXXXXXXTIVAIPYTLLFCLVIKDFPNYQILRPVTS-LRDSRVARLFLISFFFQILNPIM 471
                  T++ +PY   +   I++F +   L+   S + D RV   FL SF FQ LNP++
Sbjct: 100 WLKPHLLTLLVLPYMFFYWSRIQEFESSGWLKTEQSKIYDPRVRAAFLDSFLFQALNPVL 159

Query: 472 LPNSVLTRLIYLYFFRYSTNTVSMVST 552
           LP+ V+TRL+ ++ FRYS  ++ ++ T
Sbjct: 160 LPSPVMTRLMSVFLFRYSQVSLFILGT 186


>sp|Q2PMP0|YCF1_SOYBN Putative membrane protein ycf1 OS=Glycine max
           GN=ycf1-A PE=3 SV=1
          Length = 1792

 Score = 68.2 bits (165), Expect = 3e-11
 Identities = 37/107 (34%), Positives = 60/107 (56%), Gaps = 2/107 (1%)
 Frame = +1

Query: 238 VLAQLITASSIYCSPIYXXXXXXXXXTIVAIPYTLL--FCLVIKDFPNYQILRPVTSLRD 411
           +  QLI   SIY +P++         T++A+PY L   F    K+F NY    P  S+R+
Sbjct: 65  ITGQLIMFISIYYAPLHLALGRPHIITVIALPYLLFQFFGNNHKNFLNYGYKNP-NSIRN 123

Query: 412 SRVARLFLISFFFQILNPIMLPNSVLTRLIYLYFFRYSTNTVSMVST 552
             + R+F  +  FQ+LNP  LP+S+L RL+ +Y FR +   + ++S+
Sbjct: 124 FSIQRIFFHNLIFQLLNPFFLPSSILIRLVNIYLFRCNNKFIFLISS 170
tr_hit_id B0YPS3
Definition tr|B0YPS3|B0YPS3_ANEMR Hypothetical chloroplast RF1 OS=Aneura mirabilis
Align length 149
Score (bit) 108.0
E-value 2.0e-22
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920189|Adiantum capillus-veneris mRNA, clone:
YMU001_000134_B02.
         (553 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B0YPS3|B0YPS3_ANEMR Hypothetical chloroplast RF1 OS=Aneura mi...   108   2e-22
tr|A6H5Q0|A6H5Q0_CYCTA Putative uncharacterized protein ycf1 OS=...    96   2e-18
tr|B7ZIL6|B7ZIL6_KETDA Putative uncharacterized protein ycf1 OS=...    82   1e-14
tr|A4GGE2|A4GGE2_PHAVU Putative uncharacterized protein ycf1 OS=...    62   2e-08
tr|B1NTT1|B1NTT1_TRACE Hypothetical chloroplast RF19 OS=Tracheli...    58   4e-07
tr|B2LMP0|B2LMP0_GUIAB Hypothetical chloroplast RF19 OS=Guizotia...    57   9e-07
tr|Q6YSM2|Q6YSM2_BRANA Putative uncharacterized protein orf257 O...    54   4e-06
tr|B7ZIK4|B7ZIK4_EPHEU Putative uncharacterized protein ycf1 OS=...    54   4e-06
tr|B1A992|B1A992_CARPA Hypothetical chloroplast RF1 OS=Carica pa...    54   7e-06
tr|A7QCV2|A7QCV2_VITVI Chromosome undetermined scaffold_79, whol...    53   1e-05
tr|Q0PUX2|Q0PUX2_FRAAN Putative RF1 (Fragment) OS=Fragaria anana...    52   2e-05
tr|B2XWI7|B2XWI7_FAGEA Hypothetical chloroplast RF1 OS=Fagopyrum...    52   2e-05
tr|A6YA36|A6YA36_9MAGN Ycf1 (Fragment) OS=Penthorum chinense GN=...    52   2e-05
tr|A6YA20|A6YA20_9MAGN Ycf1 (Fragment) OS=Myriophyllum spicatum ...    52   2e-05
tr|A6Y9X6|A6Y9X6_HAMJA Ycf1 (Fragment) OS=Hamamelis japonica GN=...    52   3e-05
tr|Q0PUW5|Q0PUW5_PRUPE Putative RF1 (Fragment) OS=Prunus persica...    51   4e-05
tr|B1NWK7|B1NWK7_MANES Hypothetical chloroplast RF1 OS=Manihot e...    51   4e-05
tr|A6YA53|A6YA53_9MAGN Ycf1 (Fragment) OS=Pterostemon rotundifol...    51   4e-05
tr|A6YA44|A6YA44_9MAGN Ycf1 (Fragment) OS=Peridiscus lucidus GN=...    51   4e-05
tr|A6YA03|A6YA03_KALDA Ycf1 (Fragment) OS=Kalanchoe daigremontia...    51   4e-05
tr|A6Y9Z4|A6Y9Z4_9MAGN Ycf1 (Fragment) OS=Itea virginica GN=ycf1...    51   4e-05
tr|A6Y9W8|A6Y9W8_9MAGN Ycf1 (Fragment) OS=Daphniphyllum sp. 205-...    51   4e-05
tr|A6Y9W0|A6Y9W0_CERJA Ycf1 (Fragment) OS=Cercidiphyllum japonic...    51   4e-05
tr|A6YA62|A6YA62_9MAGN Ycf1 (Fragment) OS=Rhodoleia championii G...    51   5e-05
tr|A6Y9Y5|A6Y9Y5_HEUMI Ycf1 (Fragment) OS=Heuchera micrantha GN=...    51   5e-05
tr|A6YA77|A6YA77_9MAGN Ycf1 (Fragment) OS=Saxifraga stolonifera ...    50   6e-05
tr|A6YA70|A6YA70_RIBAM Ycf1 (Fragment) OS=Ribes americanum GN=yc...    50   1e-04
tr|A6YA12|A6YA12_LIQST Ycf1 (Fragment) OS=Liquidambar styraciflu...    50   1e-04
tr|B1VKJ7|B1VKJ7_CRYJA Hypothetical chloroplast RF1 OS=Cryptomer...    49   1e-04
tr|Q27GL5|Q27GL5_ARATH Uncharacterized protein At2g07739.1 OS=Ar...    49   2e-04

>tr|B0YPS3|B0YPS3_ANEMR Hypothetical chloroplast RF1 OS=Aneura
           mirabilis GN=ycf1 PE=4 SV=1
          Length = 1091

 Score =  108 bits (269), Expect = 2e-22
 Identities = 60/149 (40%), Positives = 77/149 (51%)
 Frame = +1

Query: 85  LPWPKLMDPYMXXXXXXXXXXXXPVGPSQILCVRSFXXXXXXXXXXXXXXXVLAQLITAS 264
           L W K    ++            P+GPSQ++ +R+F               V  QLI   
Sbjct: 17  LSWIKFSSGFILFGLYYGFLTTLPIGPSQLIALRAFLLEGNLGGIIAVSGLVTGQLIIFP 76

Query: 265 SIYCSPIYXXXXXXXXXTIVAIPYTLLFCLVIKDFPNYQILRPVTSLRDSRVARLFLISF 444
           SIY SP Y         T+  +PYTL +   IKD  +Y  LR +TS RD R+  LFL S 
Sbjct: 77  SIYNSPFYVVLLKPHIFTLSILPYTLFYWYRIKDLLDYHSLRSITSFRDVRIFGLFLDSM 136

Query: 445 FFQILNPIMLPNSVLTRLIYLYFFRYSTN 531
            FQ LNPI+LP+ VLTRL+ L+FFRYS N
Sbjct: 137 IFQSLNPIVLPSPVLTRLLSLFFFRYSNN 165


>tr|A6H5Q0|A6H5Q0_CYCTA Putative uncharacterized protein ycf1
           OS=Cycas taitungensis GN=ycf1 PE=4 SV=1
          Length = 1775

 Score = 95.5 bits (236), Expect = 2e-18
 Identities = 56/166 (33%), Positives = 81/166 (48%), Gaps = 7/166 (4%)
 Frame = +1

Query: 76  LLSLPWPKLMD------PYMXXXXXXXXXXXXPVGPSQILCVRSFXXXXXXXXXXXXXXX 237
           +LSLPW  +        P +            P+ PSQI  +R F               
Sbjct: 5   ILSLPWDSISSRIEVSGPIILFGLYYGFITTLPISPSQISPMRIFFLEGTVDGIVTISGS 64

Query: 238 VLAQLITASSIYCSPIYXXXXXXXXXTIVAIPYTLLFCLVIKD-FPNYQILRPVTSLRDS 414
           +  QLI   S+Y SPIY         T++ +PY  L C    +   N + L P+ SL +S
Sbjct: 65  ITGQLIVFLSMYYSPIYTVLGKPHAITLLVVPYMFLHCFHTNEKLSNSKSLYPINSLNNS 124

Query: 415 RVARLFLISFFFQILNPIMLPNSVLTRLIYLYFFRYSTNTVSMVST 552
           R+  LF+ S  FQ+LNPI+LP+ +LTRL+ L+ FRYS N   ++S+
Sbjct: 125 RILGLFMDSLIFQLLNPIILPSPILTRLMNLFLFRYSNNISFVISS 170


>tr|B7ZIL6|B7ZIL6_KETDA Putative uncharacterized protein ycf1
           OS=Keteleeria davidiana GN=ycf1 PE=4 SV=1
          Length = 1886

 Score = 82.4 bits (202), Expect = 1e-14
 Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 1/155 (0%)
 Frame = +1

Query: 91  WPKLMDPYMXXXXXXXXXXXXPVGPSQILCVRSFXXXXXXXXXXXXXXXVLAQLITASSI 270
           W ++  P +            P GPS+I  +RSF               +  QLI   S+
Sbjct: 15  WIEVSGPIILFGLYYGFITTLPFGPSKIYSIRSFFLGEPIYGIIAISGSITGQLIVFLSM 74

Query: 271 YCSPIYXXXXXXXXXTIVAIPYTLL-FCLVIKDFPNYQILRPVTSLRDSRVARLFLISFF 447
           Y SPIY         T++ +PY    F  + K+  + + L P+ S+ + ++  +F+    
Sbjct: 75  YYSPIYAALWKPHAITLLVVPYMFFRFYQISKEPSSSESLHPINSINNPKILSIFMGGLI 134

Query: 448 FQILNPIMLPNSVLTRLIYLYFFRYSTNTVSMVST 552
            Q+ NPI+L N VLTRL+ L+ FRY  N   ++S+
Sbjct: 135 LQLFNPILLANPVLTRLVNLFLFRYGDNISFVISS 169


>tr|A4GGE2|A4GGE2_PHAVU Putative uncharacterized protein ycf1
           OS=Phaseolus vulgaris GN=ycf1 PE=4 SV=1
          Length = 184

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 2/107 (1%)
 Frame = +1

Query: 238 VLAQLITASSIYCSPIYXXXXXXXXXTIVAIPYTLL--FCLVIKDFPNYQILRPVTSLRD 411
           +  QLI   SIY +P++         T++AIPY L   F    K+F NY    P  S+R+
Sbjct: 65  ITGQLIIFMSIYYAPLHLALGRPHTITVIAIPYLLFQFFGNSKKNFLNYGYKNP-NSIRN 123

Query: 412 SRVARLFLISFFFQILNPIMLPNSVLTRLIYLYFFRYSTNTVSMVST 552
             + R+F  +  FQ  NP+ LP+S+  R + +Y FR +   + +  +
Sbjct: 124 FSIQRIFFQNLLFQFFNPLFLPSSIFMRFVNIYLFRCNNKVLFLTKS 170


>tr|B1NTT1|B1NTT1_TRACE Hypothetical chloroplast RF19 OS=Trachelium
           caeruleum GN=ycf1 PE=4 SV=1
          Length = 2136

 Score = 57.8 bits (138), Expect = 4e-07
 Identities = 34/94 (36%), Positives = 51/94 (54%)
 Frame = +1

Query: 238 VLAQLITASSIYCSPIYXXXXXXXXXTIVAIPYTLLFCLVIKDFPNYQILRPVTSLRDSR 417
           +L QL+   SIY +P++         T   +PY L++ L    F N+    P  S+  S 
Sbjct: 52  ILGQLVRFLSIYNAPLHRLLCIPHAITAFFVPYLLIYFL----FDNFH---PSFSISSSS 104

Query: 418 VARLFLISFFFQILNPIMLPNSVLTRLIYLYFFR 519
              +FL SF FQ+ N I+LP+S+L RL ++Y FR
Sbjct: 105 AFSIFLNSFIFQLSNQIILPSSLLARLGHIYLFR 138


>tr|B2LMP0|B2LMP0_GUIAB Hypothetical chloroplast RF19 OS=Guizotia
           abyssinica GN=ycf1 PE=4 SV=1
          Length = 1679

 Score = 56.6 bits (135), Expect = 9e-07
 Identities = 34/107 (31%), Positives = 59/107 (55%), Gaps = 2/107 (1%)
 Frame = +1

Query: 238 VLAQLITASSIYCSPIYXXXXXXXXXTIVAIPYTLL--FCLVIKDFPNYQILRPVTSLRD 411
           +  QLI   SIY +P++         T++A+PY L   FC   K F +Y       S+R+
Sbjct: 68  ITGQLIMFISIYYAPLHLALGRPHTITVLALPYLLFHFFCNNHKHFFDYGSTTR-NSMRN 126

Query: 412 SRVARLFLISFFFQILNPIMLPNSVLTRLIYLYFFRYSTNTVSMVST 552
             +  +FL +  FQ+LN  +LP+S+L RL+ ++ FR ++  + + S+
Sbjct: 127 LSIQCVFLNNLIFQLLNHFILPSSMLARLVNIFMFRCNSKMLFVTSS 173


>tr|Q6YSM2|Q6YSM2_BRANA Putative uncharacterized protein orf257
           OS=Brassica napus GN=orf257 PE=4 SV=1
          Length = 257

 Score = 54.3 bits (129), Expect = 4e-06
 Identities = 32/107 (29%), Positives = 58/107 (54%), Gaps = 2/107 (1%)
 Frame = +1

Query: 238 VLAQLITASSIYCSPIYXXXXXXXXXTIVAIPYTLLFCLVIKDFPNYQILRPVT--SLRD 411
           +  QL+   SIY +P++         T++A+PY LLF     +  ++      T   +R+
Sbjct: 68  IAGQLMMFISIYYAPLHLALGRPHTITVLALPY-LLFHFFWNNHKHFFDYGSTTRNEMRN 126

Query: 412 SRVARLFLISFFFQILNPIMLPNSVLTRLIYLYFFRYSTNTVSMVST 552
            R+  +FL +F FQ+ N  +LP+S+L RL+ +Y FR +   + + S+
Sbjct: 127 LRIQCVFLNNFIFQLFNHFILPSSMLARLVNIYMFRCNNKMLFVTSS 173


>tr|B7ZIK4|B7ZIK4_EPHEU Putative uncharacterized protein ycf1
           OS=Ephedra equisetina GN=ycf1 PE=4 SV=1
          Length = 2018

 Score = 54.3 bits (129), Expect = 4e-06
 Identities = 38/128 (29%), Positives = 59/128 (46%), Gaps = 1/128 (0%)
 Frame = +1

Query: 157 VGPSQILCVRSFXXXXXXXXXXXXXXXVLAQLITASSIYCSPIYXXXXXXXXXTIVAIPY 336
           +GP+ +  +R+F                  Q +   SIY +P Y         ++V +PY
Sbjct: 21  LGPNFLFSLRTFLFIGIPEGKVFVSGSFAGQFLIYLSIYYAPFYQTLIKPHLMSLVVLPY 80

Query: 337 TLL-FCLVIKDFPNYQILRPVTSLRDSRVARLFLISFFFQILNPIMLPNSVLTRLIYLYF 513
            +  F  V K   N +I     SL+ +     F+     Q+LNP++  NS LTRLI ++ 
Sbjct: 81  LVSRFFFVYKK--NREIQTVFCSLQKN--CTFFIDGCLIQLLNPVIFGNSTLTRLINVFL 136

Query: 514 FRYSTNTV 537
           FRYS+N V
Sbjct: 137 FRYSSNFV 144


>tr|B1A992|B1A992_CARPA Hypothetical chloroplast RF1 OS=Carica
           papaya GN=ycf1 PE=4 SV=1
          Length = 1859

 Score = 53.5 bits (127), Expect = 7e-06
 Identities = 32/107 (29%), Positives = 58/107 (54%), Gaps = 2/107 (1%)
 Frame = +1

Query: 238 VLAQLITASSIYCSPIYXXXXXXXXXTIVAIPYTLLFCLVIKDFPNYQILRPVT--SLRD 411
           +  QL+   SIY +P++         T++A+PY LLF     +  ++      T  S+R+
Sbjct: 68  IAGQLMMFISIYYAPLHLALGRPHTITVLALPY-LLFHFFWNNHKHFFDYGSTTRNSMRN 126

Query: 412 SRVARLFLISFFFQILNPIMLPNSVLTRLIYLYFFRYSTNTVSMVST 552
            R+  +FL +  FQ+ N  +LP+S+L RL+ +Y FR +   + + S+
Sbjct: 127 LRIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKMLFVTSS 173


>tr|A7QCV2|A7QCV2_VITVI Chromosome undetermined scaffold_79, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00035573001 PE=4 SV=1
          Length = 554

 Score = 52.8 bits (125), Expect = 1e-05
 Identities = 32/107 (29%), Positives = 58/107 (54%), Gaps = 2/107 (1%)
 Frame = +1

Query: 238 VLAQLITASSIYCSPIYXXXXXXXXXTIVAIPYTLLFCLVIKDFPNYQILRPVT--SLRD 411
           +  QL+   SIY +P++         T++A+PY LLF     +  ++      T  S+R+
Sbjct: 68  ITGQLMMFISIYYAPLHLALGRPHTITVLALPY-LLFHFFWNNHKHFFDYGSTTRNSMRN 126

Query: 412 SRVARLFLISFFFQILNPIMLPNSVLTRLIYLYFFRYSTNTVSMVST 552
             +  +FL +  FQ+LN  +LP+S+L RL+ +Y FR +   + + S+
Sbjct: 127 LSIQCVFLNNLIFQLLNHFILPSSMLARLVNIYMFRCNNKMLFVTSS 173