BP920191
Clone id YMU001_000134_B05
Library
Length 306
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000134_B05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
TGAGAGGAGATTCAATGGATTCACGCCATCTCGAGTGAATCTCATCAATCGGGTAATTCT
TCGGGTGTTTCGCAAATCTCAGGACTCTAGAGTACTTCATCACTCTTCTCACACCCATGT
CAACCTGCACTTGACGCTTGTAGTTCGCTCAGGTAAACTTCTCCACCAAAAAAAAAAAAA
AACGCTCAAATCTTCATTCTTTACCTGAGTTTCCCGCGCCGGATTTCAACTTTTCTTTGC
CTTCCCGTTGAGAGGTGTTATCTCCATCAGATTCTTCACAAGAAGATGTGTAATCTGGGA
TTCTTT
■■Homology search results ■■ -
sp_hit_id P42019
Definition sp|P42019|PTST_BACST Protein ptsT OS=Bacillus stearothermophilus
Align length 25
Score (bit) 30.0
E-value 3.8
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920191|Adiantum capillus-veneris mRNA, clone:
YMU001_000134_B05.
(306 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P42019|PTST_BACST Protein ptsT OS=Bacillus stearothermophilus... 30 3.8
sp|A0JP89|CS066_XENTR UPF0515 protein C19orf66 homolog OS=Xenopu... 30 4.9
sp|Q5U2U0|CLPX_RAT ATP-dependent Clp protease ATP-binding subuni... 29 6.4
sp|Q6GMD3|CS066_XENLA UPF0515 protein C19orf66 homolog OS=Xenopu... 29 8.4

>sp|P42019|PTST_BACST Protein ptsT OS=Bacillus stearothermophilus
GN=ptsT PE=4 SV=1
Length = 155

Score = 30.0 bits (66), Expect = 3.8
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2

Query: 38 NLINRVILRVFRKSQDSRVLHHSSH 112
+L+N V +R+ + + SRVLHH SH
Sbjct: 44 HLVNNVQIRIRKHAHISRVLHHDSH 68


>sp|A0JP89|CS066_XENTR UPF0515 protein C19orf66 homolog OS=Xenopus
tropicalis PE=2 SV=1
Length = 304

Score = 29.6 bits (65), Expect = 4.9
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Frame = -1

Query: 267 MEITPLNGKAKKS*NPARETQVKNEDLSVFF----FFWWRSLPERTTSVKC 127
M PL K K N A E ++ + D F WWR +P+R +C
Sbjct: 101 MNTLPLTEKNLKMFNDAAENRIPSRDRQFACKECDFVWWRRVPQRKEVSRC 151


>sp|Q5U2U0|CLPX_RAT ATP-dependent Clp protease ATP-binding subunit
clpX-like, mitochondrial OS=Rattus norvegicus GN=Clpx
PE=2 SV=1
Length = 633

Score = 29.3 bits (64), Expect = 6.4
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = -3

Query: 295 DYTSSCEESDGDNTSQREGKEKLKSGAGNSGK 200
D T+ DG+ S EG K KSG+GNSGK
Sbjct: 68 DGTNKDGSGDGNKKSVTEGSSK-KSGSGNSGK 98


>sp|Q6GMD3|CS066_XENLA UPF0515 protein C19orf66 homolog OS=Xenopus
laevis PE=2 SV=1
Length = 305

Score = 28.9 bits (63), Expect = 8.4
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Frame = -1

Query: 306 KESQITHLLVKNLMEITPLNGKAKKS*NPARETQVKNEDLSVFF----FFWWRSLPERTT 139
K+ I L K M PL K K N A E ++ D + WWR +P+R
Sbjct: 91 KDKDIQDLAKK--MNTLPLTQKNLKMFNDAAENRIPARDRQFACKECDYMWWRRVPQRKE 148

Query: 138 SVKCR 124
+C+
Sbjct: 149 VSRCQ 153


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920191|Adiantum capillus-veneris mRNA, clone:
YMU001_000134_B05.
(306 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******