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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920192
Clone id YMU001_000134_B06
Library
Length 410
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000134_B06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTTTTTTTTTTTTTTTGTAGTGAAAGTTATGTATTTGATGTGGGGAAAAAAACCCACAAT
GTTTCGAGTGTCATGTCTTAGATTATGTAGCCCCGACCTTACTGGAAGTGACATGACAAA
CCAAAACCAAATCACCCTGACAAAATGCATGTCATATACGCTAACAGTCCGTGCTCATCA
AAATTCCACACAAGAATACTAAGCTGGATTTCCATTTGCGACATTTGATGCTGAGGCACC
TTTGGGCTGCCCGATCCCCTGTGACACACTGTATTCTTTCCATAGTGGTATCACACTTTC
AAGATACTGCATGAACTTCCACAAACCCACACGCATCTCAACATTACCATACCCATCTGC
CTTCTGCTCTGGATAGCCAATCCCACATCCAAACAAACCAGGCGCAATGA
■■Homology search results ■■ -
sp_hit_id A9ND48
Definition sp|A9ND48|ALR_COXBR Alanine racemase OS=Coxiella burnetii (strain RSA 331 / Henzerling II)
Align length 46
Score (bit) 32.0
E-value 0.97
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920192|Adiantum capillus-veneris mRNA, clone:
YMU001_000134_B06.
         (380 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A9ND48|ALR_COXBR Alanine racemase OS=Coxiella burnetii (strai...    32   0.97 
sp|Q24UA0|MTNA_DESHY Methylthioribose-1-phosphate isomerase OS=D...    31   1.7  
sp|Q83D71|ALR_COXBU Alanine racemase OS=Coxiella burnetii GN=alr...    31   1.7  
sp|A9KFM0|ALR_COXBN Alanine racemase OS=Coxiella burnetii (strai...    31   1.7  
sp|Q04690|NF1_MOUSE Neurofibromin OS=Mus musculus GN=Nf1 PE=1 SV=1     31   2.2  
sp|P21359|NF1_HUMAN Neurofibromin OS=Homo sapiens GN=NF1 PE=1 SV=2     31   2.2  
sp|Q8XU95|CAAL_RALSO Carboxylate-amine ligase RSc3298 OS=Ralston...    31   2.2  
sp|Q2LXN1|MTNA_SYNAS Methylthioribose-1-phosphate isomerase OS=S...    30   4.8  
sp|P05861|NEF_SIVMK Protein Nef OS=Simian immunodeficiency virus...    29   6.3  
sp|Q6ZU69|CI14B_HUMAN Transmembrane protein C9orf144B OS=Homo sa...    29   6.3  
sp|Q8ZLI9|BIOH_SALTY Carboxylesterase bioH OS=Salmonella typhimu...    29   8.2  
sp|Q8Z221|BIOH_SALTI Carboxylesterase bioH OS=Salmonella typhi G...    29   8.2  
sp|Q5PLY8|BIOH_SALPA Carboxylesterase bioH OS=Salmonella paratyp...    29   8.2  
sp|Q57IW5|BIOH_SALCH Carboxylesterase bioH OS=Salmonella cholera...    29   8.2  
sp|A9MMB5|BIOH_SALAR Carboxylesterase bioH OS=Salmonella arizona...    29   8.2  

>sp|A9ND48|ALR_COXBR Alanine racemase OS=Coxiella burnetii (strain
           RSA 331 / Henzerling II) GN=alr PE=3 SV=1
          Length = 364

 Score = 32.0 bits (71), Expect = 0.97
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = -2

Query: 364 LAIQSRRQMGMVMLRCVWVCGSSCSILKV*YHYGKNTVCHRGSGSP 227
           +AI++RRQ   V   C W C     I  V   YG     H  SG+P
Sbjct: 246 IAIKNRRQNDSVGYGCTWSCSEDMPIAIVSIGYGDGYPRHAPSGTP 291


>sp|Q24UA0|MTNA_DESHY Methylthioribose-1-phosphate isomerase
           OS=Desulfitobacterium hafniense (strain Y51) GN=mtnA
           PE=3 SV=1
          Length = 345

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +1

Query: 82  LTGSDMTNQNQITLTKCMSYTLTVRAHQNSTQEY*AGFPFATFDAEAPLGCPIPCD 249
           + G+D    N  T  K  +Y+L V AH +    Y A  P +T D + P G  IP +
Sbjct: 231 IVGADRIAANGDTANKIGTYSLAVLAHAHGIPFYVAA-PTSTIDLKVPSGQDIPIE 285


>sp|Q83D71|ALR_COXBU Alanine racemase OS=Coxiella burnetii GN=alr
           PE=3 SV=1
          Length = 364

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = -2

Query: 364 LAIQSRRQMGMVMLRCVWVCGSSCSILKV*YHYGKNTVCHRGSGSP 227
           +AI++RRQ   V   C W C     I  V   YG     H  SG+P
Sbjct: 246 IAIKNRRQNDSVGYGCTWSCPEDMPIAIVSIGYGDGYPRHAPSGTP 291


>sp|A9KFM0|ALR_COXBN Alanine racemase OS=Coxiella burnetii (strain
           Dugway 5J108-111) GN=alr PE=3 SV=1
          Length = 364

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = -2

Query: 364 LAIQSRRQMGMVMLRCVWVCGSSCSILKV*YHYGKNTVCHRGSGSP 227
           +AI++RRQ   V   C W C     I  V   YG     H  SG+P
Sbjct: 246 IAIKNRRQNDSVGYGCTWSCPEDMPIAIVSIGYGDGYPRHAPSGTP 291


>sp|Q04690|NF1_MOUSE Neurofibromin OS=Mus musculus GN=Nf1 PE=1 SV=1
          Length = 2841

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = -2

Query: 238 SGSPKVPQHQMSQMEIQLSILVWNFDEHGLLAYMTC 131
           SG+P + +   +++E+ L + +WN D   +L  M+C
Sbjct: 676 SGTPPICRQAQTKLEVALYMFLWNPDTEAVLVAMSC 711


>sp|P21359|NF1_HUMAN Neurofibromin OS=Homo sapiens GN=NF1 PE=1 SV=2
          Length = 2839

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = -2

Query: 238 SGSPKVPQHQMSQMEIQLSILVWNFDEHGLLAYMTC 131
           SG+P + +   +++E+ L + +WN D   +L  M+C
Sbjct: 674 SGTPPICRQAQTKLEVALYMFLWNPDTEAVLVAMSC 709


>sp|Q8XU95|CAAL_RALSO Carboxylate-amine ligase RSc3298 OS=Ralstonia
           solanacearum GN=RSc3298 PE=3 SV=1
          Length = 377

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +1

Query: 199 FATFDAEAPLGCPIPCDTLYSFHSGITLSRYCMNF 303
           F  F     LGCP P D LY  H+   +SRY  +F
Sbjct: 130 FTVFGQHVHLGCPSPDDALYLLHA---MSRYVPHF 161


>sp|Q2LXN1|MTNA_SYNAS Methylthioribose-1-phosphate isomerase
           OS=Syntrophus aciditrophicus (strain SB) GN=mtnA PE=3
           SV=1
          Length = 367

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 22/67 (32%), Positives = 30/67 (44%)
 Frame = +1

Query: 49  RVSCLRLCSPDLTGSDMTNQNQITLTKCMSYTLTVRAHQNSTQEY*AGFPFATFDAEAPL 228
           R+ C+      L G+D    N  T  K  +YTL V A  +S   Y A  P +T D +   
Sbjct: 247 RIDCI------LVGADRIATNGDTANKIGTYTLAVLAAAHSVPLYVAA-PLSTIDRKLSS 299

Query: 229 GCPIPCD 249
           G  IP +
Sbjct: 300 GNEIPIE 306


>sp|P05861|NEF_SIVMK Protein Nef OS=Simian immunodeficiency virus
           (isolate K6W) GN=nef PE=3 SV=3
          Length = 207

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 290 YLESVIPLWKEYSVSQGIGQPK 225
           YLE +IP W++Y+   GI  PK
Sbjct: 145 YLEGIIPDWQDYTSGPGIRYPK 166


>sp|Q6ZU69|CI14B_HUMAN Transmembrane protein C9orf144B OS=Homo
           sapiens GN=C9orf144B PE=2 SV=4
          Length = 1335

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 17/74 (22%), Positives = 33/74 (44%)
 Frame = +2

Query: 101 QTKTKSP*QNACHIR*QSVLIKIPHKNTKLDFHLRHLMLRHLWAARSPVTHCILSIVVSH 280
           +T T S    +  +  + +L    H    L+FH++  ++RH W     +   I  ++ S 
Sbjct: 563 ETTTASQTGKSISVLTRELLFFPEHARKLLEFHIQKQLIRHRWGLPQKIQQSIQLLLTST 622

Query: 281 FQDTA*TSTNPHAS 322
            Q T  +S+   A+
Sbjct: 623 DQQTVSSSSTALAN 636
tr_hit_id Q5WSN3
Definition tr|Q5WSN3|Q5WSN3_LEGPL Putative uncharacterized protein OS=Legionella pneumophila (strain Lens)
Align length 42
Score (bit) 58.2
E-value 2.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920192|Adiantum capillus-veneris mRNA, clone:
YMU001_000134_B06.
         (380 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q5WSN3|Q5WSN3_LEGPL Putative uncharacterized protein OS=Legio...    58   2e-07
tr|Q5ZRG5|Q5ZRG5_LEGPH Putative uncharacterized protein OS=Legio...    58   3e-07
tr|A5IIB2|A5IIB2_LEGPC Putative uncharacterized protein OS=Legio...    58   3e-07
tr|Q86L27|Q86L27_DICDI Putative uncharacterized protein OS=Dicty...    58   3e-07
tr|Q83C61|Q83C61_COXBU Putative uncharacterized protein OS=Coxie...    55   2e-06
tr|B6J7S6|B6J7S6_COXB1 Putative uncharacterized protein OS=Coxie...    55   2e-06
tr|B6IZL1|B6IZL1_COXB2 Putative uncharacterized protein OS=Coxie...    55   2e-06
tr|A9NDY0|A9NDY0_COXBR Pyridine nucleotide-disulphide oxidoreduc...    55   2e-06
tr|A9KFW7|A9KFW7_COXBN Putative uncharacterized protein OS=Coxie...    55   2e-06
tr|A0QDE0|A0QDE0_MYCA1 Putative uncharacterized protein OS=Mycob...    55   2e-06
tr|A9ZIH3|A9ZIH3_COXBU Pyridine nucleotide-disulphide oxidoreduc...    55   2e-06
tr|A9SLM8|A9SLM8_PHYPA Predicted protein OS=Physcomitrella paten...    54   3e-06
tr|B2HMD5|B2HMD5_MYCMM Conserved hypothetical membrane protein O...    54   4e-06
tr|A0PTZ3|A0PTZ3_MYCUA Conserved hypothetical membrane protein O...    54   4e-06
tr|B6HHI3|B6HHI3_PENCH Pc21g05370 protein OS=Penicillium chrysog...    54   5e-06
tr|Q2TYY1|Q2TYY1_ASPOR Predicted protein OS=Aspergillus oryzae G...    52   1e-05
tr|B8NYJ6|B8NYJ6_ASPFL Putative uncharacterized protein OS=Asper...    52   1e-05
tr|B2SF47|B2SF47_FRATM Putative uncharacterized protein OS=Franc...    52   2e-05
tr|A4IYT6|A4IYT6_FRATW Putative uncharacterized protein OS=Franc...    52   2e-05
tr|A0Q4Y1|A0Q4Y1_FRATN Putative uncharacterized protein OS=Franc...    52   2e-05
tr|B4ASK3|B4ASK3_FRANO Putative uncharacterized protein OS=Franc...    52   2e-05
tr|A7JKG5|A7JKG5_FRANO Putative uncharacterized protein OS=Franc...    52   2e-05
tr|A7JGA1|A7JGA1_FRANO Putative uncharacterized protein OS=Franc...    52   2e-05
tr|A7EAY8|A7EAY8_SCLS1 Putative uncharacterized protein OS=Scler...    51   2e-05
tr|A6RXF1|A6RXF1_BOTFB Putative uncharacterized protein OS=Botry...    51   2e-05
tr|B0U034|B0U034_FRAP2 Putative uncharacterized protein OS=Franc...    51   3e-05
tr|A7YSL6|A7YSL6_FRATU Putative uncharacterized protein OS=Franc...    50   4e-05
tr|A4KPW7|A4KPW7_FRATU Putative uncharacterized protein OS=Franc...    50   4e-05
tr|Q0D1Y3|Q0D1Y3_ASPTN Putative uncharacterized protein OS=Asper...    50   7e-05
tr|Q5BDD0|Q5BDD0_EMENI Putative uncharacterized protein OS=Emeri...    49   9e-05

>tr|Q5WSN3|Q5WSN3_LEGPL Putative uncharacterized protein
           OS=Legionella pneumophila (strain Lens) GN=lpl2845 PE=4
           SV=1
          Length = 348

 Score = 58.2 bits (139), Expect = 2e-07
 Identities = 25/42 (59%), Positives = 30/42 (71%)
 Frame = -1

Query: 380 LFGCGIGYPEQKADGYGNVEMRVGLWKFMQYLESVIPLWKEY 255
           LFG GI YPE   D +G VE +VGLWKFM YL  V+P+W +Y
Sbjct: 305 LFGLGIAYPELNVDPFGTVEHQVGLWKFMVYLCKVLPVWFKY 346


>tr|Q5ZRG5|Q5ZRG5_LEGPH Putative uncharacterized protein
           OS=Legionella pneumophila subsp. pneumophila (strain
           Philadelphia 1 / ATCC 33152 / DSM 7513) GN=lpg2917 PE=4
           SV=1
          Length = 348

 Score = 57.8 bits (138), Expect = 3e-07
 Identities = 24/42 (57%), Positives = 30/42 (71%)
 Frame = -1

Query: 380 LFGCGIGYPEQKADGYGNVEMRVGLWKFMQYLESVIPLWKEY 255
           LFG GI YPE   D +G +E +VGLWKFM YL  V+P+W +Y
Sbjct: 305 LFGLGIAYPELSVDPFGTIEHQVGLWKFMVYLCKVLPVWFKY 346


>tr|A5IIB2|A5IIB2_LEGPC Putative uncharacterized protein
           OS=Legionella pneumophila (strain Corby) GN=LPC_3225
           PE=4 SV=1
          Length = 348

 Score = 57.8 bits (138), Expect = 3e-07
 Identities = 24/42 (57%), Positives = 30/42 (71%)
 Frame = -1

Query: 380 LFGCGIGYPEQKADGYGNVEMRVGLWKFMQYLESVIPLWKEY 255
           LFG GI YPE   D +G +E +VGLWKFM YL  V+P+W +Y
Sbjct: 305 LFGLGIAYPELSVDPFGTIEHQVGLWKFMVYLCKVLPVWFKY 346


>tr|Q86L27|Q86L27_DICDI Putative uncharacterized protein
           OS=Dictyostelium discoideum GN=DDB_0168996 PE=4 SV=1
          Length = 387

 Score = 57.8 bits (138), Expect = 3e-07
 Identities = 24/39 (61%), Positives = 29/39 (74%)
 Frame = -1

Query: 380 LFGCGIGYPEQKADGYGNVEMRVGLWKFMQYLESVIPLW 264
           LFG GI +P+ K D  GN+E  VGLWKFM YL+ V+PLW
Sbjct: 343 LFGIGIAFPQFKPDRVGNLEYNVGLWKFMVYLDQVLPLW 381


>tr|Q83C61|Q83C61_COXBU Putative uncharacterized protein OS=Coxiella
           burnetii GN=CBU_1268 PE=4 SV=2
          Length = 357

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 22/44 (50%), Positives = 29/44 (65%)
 Frame = -1

Query: 380 LFGCGIGYPEQKADGYGNVEMRVGLWKFMQYLESVIPLWKEYSV 249
           LFG GIG+P Q     G  EM VGLWKFM  +  V+P+W++Y +
Sbjct: 314 LFGTGIGFPRQVTTPLGATEMNVGLWKFMHDIRKVMPIWQQYGL 357


>tr|B6J7S6|B6J7S6_COXB1 Putative uncharacterized protein OS=Coxiella
           burnetii (strain CbuK_Q154) GN=CbuK_1130 PE=4 SV=1
          Length = 357

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 22/44 (50%), Positives = 29/44 (65%)
 Frame = -1

Query: 380 LFGCGIGYPEQKADGYGNVEMRVGLWKFMQYLESVIPLWKEYSV 249
           LFG GIG+P Q     G  EM VGLWKFM  +  V+P+W++Y +
Sbjct: 314 LFGMGIGFPRQVTTPLGATEMNVGLWKFMHDIRKVMPIWQQYGL 357


>tr|B6IZL1|B6IZL1_COXB2 Putative uncharacterized protein OS=Coxiella
           burnetii (strain CbuG_Q212) GN=CbuG_0742 PE=4 SV=1
          Length = 357

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 22/44 (50%), Positives = 29/44 (65%)
 Frame = -1

Query: 380 LFGCGIGYPEQKADGYGNVEMRVGLWKFMQYLESVIPLWKEYSV 249
           LFG GIG+P Q     G  EM VGLWKFM  +  V+P+W++Y +
Sbjct: 314 LFGTGIGFPRQVTTPLGATEMNVGLWKFMHDIRKVMPIWQQYGL 357


>tr|A9NDY0|A9NDY0_COXBR Pyridine nucleotide-disulphide
           oxidoreductase OS=Coxiella burnetii (strain RSA 331 /
           Henzerling II) GN=COXBURSA331_A1416 PE=4 SV=1
          Length = 353

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 22/44 (50%), Positives = 29/44 (65%)
 Frame = -1

Query: 380 LFGCGIGYPEQKADGYGNVEMRVGLWKFMQYLESVIPLWKEYSV 249
           LFG GIG+P Q     G  EM VGLWKFM  +  V+P+W++Y +
Sbjct: 310 LFGTGIGFPRQVTTPLGATEMNVGLWKFMHDIRKVMPIWQQYGL 353


>tr|A9KFW7|A9KFW7_COXBN Putative uncharacterized protein OS=Coxiella
           burnetii (strain Dugway 5J108-111) GN=CBUD_1353 PE=4
           SV=2
          Length = 357

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 22/44 (50%), Positives = 29/44 (65%)
 Frame = -1

Query: 380 LFGCGIGYPEQKADGYGNVEMRVGLWKFMQYLESVIPLWKEYSV 249
           LFG GIG+P Q     G  EM VGLWKFM  +  V+P+W++Y +
Sbjct: 314 LFGTGIGFPRQVTTPLGATEMNVGLWKFMHDIRKVMPIWQQYGL 357


>tr|A0QDE0|A0QDE0_MYCA1 Putative uncharacterized protein
           OS=Mycobacterium avium (strain 104) GN=MAV_1699 PE=4
           SV=1
          Length = 336

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 24/42 (57%), Positives = 29/42 (69%)
 Frame = -1

Query: 380 LFGCGIGYPEQKADGYGNVEMRVGLWKFMQYLESVIPLWKEY 255
           LFG GI +P+   D YG  + RVGL KFM YL+SV+PLW  Y
Sbjct: 293 LFGVGIAFPQYAEDPYGYGQFRVGLKKFMDYLDSVLPLWLRY 334