BP920194
Clone id YMU001_000134_B08
Library
Length 378
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000134_B08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
GGCTCTTATAAGCCACATGGAAGACATGCGATTACCTTCACCCAATGACCCACTCACTTT
ACATGAGTTTCTCAAGAGAGAATGCAACCAGCTTCTCTTACATTCATCCAATTTGAAAGA
TCTAATCTTCCCTTCAGAAGCCCACCTTCACCAGCTGCTTCAAGCAAAAGAGAGCTCAAC
TACTTCTCCAAGCAACTGGCTATGGAATCTCGACGCCACCTCCAAAGCCACCTCAATATT
TCCGTCCCCGGACATGGGTTTCACATTCAAAGATCTGATAGATCACATTCATGCTCCACC
ATTGGAAATCATGAAGCTTTCTACACAGTTCAAAGGGGTTGTTCCTCAGCTGAATGGGAA
ATGGGGAGCTCAGATTTA
■■Homology search results ■■ -
sp_hit_id Q6AJ23
Definition sp|Q6AJ23|SYC_DESPS Cysteinyl-tRNA synthetase OS=Desulfotalea psychrophila
Align length 74
Score (bit) 35.0
E-value 0.12
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920194|Adiantum capillus-veneris mRNA, clone:
YMU001_000134_B08.
(363 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q6AJ23|SYC_DESPS Cysteinyl-tRNA synthetase OS=Desulfotalea ps... 35 0.12
sp|Q9GFN8|MATK_RHISY Maturase K OS=Rhizophora stylosa GN=matK PE... 32 0.76
sp|Q4H1A1|MATK_BELCH Maturase K OS=Belamcanda chinensis GN=matK ... 32 0.99
sp|Q5UQY9|YR896_MIMIV Putative ankyrin repeat protein R896 OS=Ac... 32 1.3
sp|Q8WJR9|MATK_ARPGI Maturase K (Fragment) OS=Arpophyllum gigant... 31 2.2
sp|O62618|MK14A_DROME Mitogen-activated protein kinase 14A OS=Dr... 30 2.9
sp|Q8SKV2|MATK_ALPZE Maturase K OS=Alpinia zerumbet GN=matK PE=3... 30 2.9
sp|Q8HVA1|MATK_ALPCA Maturase K OS=Alpinia calcarata GN=matK PE=... 30 2.9
sp|Q17RY0|CPEB4_HUMAN Cytoplasmic polyadenylation element-bindin... 30 3.8
sp|Q71M21|RH21B_XENLA Rho GTPase-activating protein 21-B OS=Xeno... 29 6.4
sp|Q4JXD1|Y374_CORJK UPF0678 fatty acid-binding protein-like pro... 29 8.4
sp|Q2H8D5|SET9_CHAGB Histone-lysine N-methyltransferase SET9 OS=... 29 8.4
sp|Q7VAN0|RNZ_PROMA Ribonuclease Z OS=Prochlorococcus marinus GN... 29 8.4
sp|P15722|PEL59_SOLLC Probable pectate lyase P59 OS=Solanum lyco... 29 8.4
sp|Q8TC27|ADA32_HUMAN ADAM 32 OS=Homo sapiens GN=ADAM32 PE=1 SV=1 29 8.4

>sp|Q6AJ23|SYC_DESPS Cysteinyl-tRNA synthetase OS=Desulfotalea
psychrophila GN=cysS PE=3 SV=1
Length = 489

Score = 35.0 bits (79), Expect = 0.12
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = +2

Query: 116 KDLIFPSEAHLHQLLQAKESSTTSPSN-WLWNLDATSKATSIFPSPDMGFTFKDLIDHIH 292
KDLIFP H +++ Q++ ++ +N W+ + T K + S T KD++DH H
Sbjct: 228 KDLIFPH--HENEIAQSEGANGKPFANTWIHHGFVTIKDEKMSKSLGNFLTIKDILDHYH 285

Query: 293 APPLEIMKLSTQFK 334
L STQ++
Sbjct: 286 PEILRAFIFSTQYR 299


>sp|Q9GFN8|MATK_RHISY Maturase K OS=Rhizophora stylosa GN=matK PE=3
SV=1
Length = 505

Score = 32.3 bits (72), Expect = 0.76
Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 12/100 (12%)
Frame = +2

Query: 5 LISHMEDMRLPSPNDPLTLHEFLKRECNQLLLHSSNLKDLIFPSEAHLHQLLQAKESSTT 184
L+S +E+ + ++ ++H H + + D++ P HL +L+Q
Sbjct: 110 LVSSLEESEIVKSHNLRSIHSLFPF-LEDKFPHLNYVSDVLVPYPIHLEKLIQTLRYWVK 168

Query: 185 SPSN-----------WLWN-LDATSKATSIFPSPDMGFTF 268
PS+ W WN L + K+ SIFP + F F
Sbjct: 169 DPSSLHLFRLVVHEEWNWNSLIISKKSISIFPKSNPRFFF 208


>sp|Q4H1A1|MATK_BELCH Maturase K OS=Belamcanda chinensis GN=matK
PE=3 SV=1
Length = 522

Score = 32.0 bits (71), Expect = 0.99
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +2

Query: 5 LISHMEDMRLPSPNDPLTLHEFLKRECNQLLLHSSNLKDLIFPSEAHLHQLLQ 163
L+S+ E +P ++ ++H F LLHS + D+I P H+ L+Q
Sbjct: 119 LVSYFEKKEIPKSHNLRSIHSFFPF-LEDKLLHSDYVSDIIIPHPIHMEILVQ 170


>sp|Q5UQY9|YR896_MIMIV Putative ankyrin repeat protein R896
OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R896 PE=4
SV=1
Length = 332

Score = 31.6 bits (70), Expect = 1.3
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +1

Query: 166 KRELNYFSKQLAMESRRHLQSHLNISVPGHGFHIQRSDRSH 288
K ++++F++ S+RH HLNI + G F I R D H
Sbjct: 23 KTKVSFFNR-----SQRHFSQHLNIDIIGPLFKITRKDEKH 58


>sp|Q8WJR9|MATK_ARPGI Maturase K (Fragment) OS=Arpophyllum giganteum
GN=matK PE=3 SV=1
Length = 509

Score = 30.8 bits (68), Expect = 2.2
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +2

Query: 5 LISHMEDMRLPSPNDPLTLHEFLKRECNQLLLHSSNLKDLIFPSEAHLHQLLQ 163
L+S +E+ R+P + ++H LLH + + DL+ P HL L+Q
Sbjct: 114 LVSSLEEKRIPKSQNLRSIHSIFPF-LEDKLLHLNYVSDLLIPHPIHLEILVQ 165


>sp|O62618|MK14A_DROME Mitogen-activated protein kinase 14A
OS=Drosophila melanogaster GN=Mpk2 PE=1 SV=1
Length = 366

Score = 30.4 bits (67), Expect = 2.9
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +2

Query: 125 IFPSEAHLHQLLQAKESSTTSPSNWLWNLDATSKATSIFPSPDM-GFTFKDLIDHIHAPP 301
+FP H+HQL E T P+ +L + + S + I P M G +FK++ + +
Sbjct: 226 LFPGTDHIHQLNLIMEMLGTPPAEFLKKISSESARSYIQSLPPMKGRSFKNVFKNANPLA 285

Query: 302 LEIMK 316
+++++
Sbjct: 286 IDLLE 290


>sp|Q8SKV2|MATK_ALPZE Maturase K OS=Alpinia zerumbet GN=matK PE=3
SV=1
Length = 515

Score = 30.4 bits (67), Expect = 2.9
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = +2

Query: 5 LISHMEDMRLPSPNDPLTLHEFLKRECNQLLLHSSNLKDLIFPSEAHLHQLLQAKES 175
LIS +E+ +P ++ + H LLH + L D++ P AH+ L+Q +S
Sbjct: 117 LISSLEEKEIPKSHNLQSSHSIFPF-LEDKLLHLNYLSDILIPYPAHMEILVQMLQS 172


>sp|Q8HVA1|MATK_ALPCA Maturase K OS=Alpinia calcarata GN=matK PE=3
SV=1
Length = 515

Score = 30.4 bits (67), Expect = 2.9
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = +2

Query: 5 LISHMEDMRLPSPNDPLTLHEFLKRECNQLLLHSSNLKDLIFPSEAHLHQLLQAKES 175
LIS +E+ +P ++ + H LLH + L D++ P AH+ L+Q +S
Sbjct: 117 LISSLEEKEIPKSHNLQSSHSIFPF-LEDKLLHLNYLSDILIPYPAHMEILVQMLQS 172


>sp|Q17RY0|CPEB4_HUMAN Cytoplasmic polyadenylation element-binding
protein 4 OS=Homo sapiens GN=CPEB4 PE=1 SV=1
Length = 729

Score = 30.0 bits (66), Expect = 3.8
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +2

Query: 143 HLHQLLQAKESSTTSPSNWLWNLDATSKATSIFPSPDMGFTF 268
H+ A+ SS +P +W+ D+ ++A +IFP PD TF
Sbjct: 342 HIQLQKYARPSSAFAPKSWME--DSLNRADNIFPFPDRPRTF 381


>sp|Q71M21|RH21B_XENLA Rho GTPase-activating protein 21-B OS=Xenopus
laevis GN=arhgap21-B PE=2 SV=1
Length = 1902

Score = 29.3 bits (64), Expect = 6.4
Identities = 18/63 (28%), Positives = 34/63 (53%)
Frame = +2

Query: 2 ALISHMEDMRLPSPNDPLTLHEFLKRECNQLLLHSSNLKDLIFPSEAHLHQLLQAKESST 181
A +S ++ ++ P+ L++ E+L RE L S++ + P E H+ + KES++
Sbjct: 1773 AELSAVDRLKPKCPSQDLSISEWLVRE---RLRTSTSELSTVEPEEKHISETTGQKESAS 1829

Query: 182 TSP 190
SP
Sbjct: 1830 ASP 1832


tr_hit_id A4Y0I1
Definition tr|A4Y0I1|A4Y0I1_PSEMY Transcriptional regulator, XRE family OS=Pseudomonas mendocina (strain ymp)
Align length 74
Score (bit) 33.9
E-value 4.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920194|Adiantum capillus-veneris mRNA, clone:
YMU001_000134_B08.
(363 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A4Y0I1|A4Y0I1_PSEMY Transcriptional regulator, XRE family OS=... 34 4.2
tr|A5EFY2|A5EFY2_BRASB Putative transaminase-like enzyme OS=Brad... 33 5.5
tr|A5BDS4|A5BDS4_VITVI Putative uncharacterized protein OS=Vitis... 33 7.2
tr|B6QHF4|B6QHF4_PENMA 60S ribosome biogenesis protein Mak11, pu... 33 7.2
tr|B7PJM5|B7PJM5_IXOSC Putative uncharacterized protein OS=Ixode... 33 9.3

>tr|A4Y0I1|A4Y0I1_PSEMY Transcriptional regulator, XRE family
OS=Pseudomonas mendocina (strain ymp) GN=Pmen_4350 PE=4
SV=1
Length = 264

Score = 33.9 bits (76), Expect = 4.2
Identities = 21/74 (28%), Positives = 34/74 (45%)
Frame = +2

Query: 131 PSEAHLHQLLQAKESSTTSPSNWLWNLDATSKATSIFPSPDMGFTFKDLIDHIHAPPLEI 310
P+ + QLL+A E + WNL A + A F D+ + PPL +
Sbjct: 90 PARQAIEQLLKAHEPYPALAIDRQWNLLAANAAVGTF--------IADMPAFLLGPPLNV 141

Query: 311 MKLSTQFKGVVPQL 352
M+LS +G+ P++
Sbjct: 142 MRLSLHPEGLAPRI 155


>tr|A5EFY2|A5EFY2_BRASB Putative transaminase-like enzyme
OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)
GN=BBta_2949 PE=4 SV=1
Length = 292

Score = 33.5 bits (75), Expect = 5.5
Identities = 31/107 (28%), Positives = 44/107 (41%), Gaps = 9/107 (8%)
Frame = +2

Query: 5 LISHMEDMRLPSPNDPLTLHEFLKRECNQLLLHSSNLKDLIFPSEAHLHQLLQAKES--- 175
LISH D+R P P++ +F L + I H H L+ A+
Sbjct: 36 LISHSVDIR-PRPSERTARRDFF-----------GTLTESIVIDTQHRHLLIDARSRVKL 83

Query: 176 STTSP------SNWLWNLDATSKATSIFPSPDMGFTFKDLIDHIHAP 298
S T P S W DA +ATS+ PS +G+ F + + AP
Sbjct: 84 SRTPPERDAPSSAWERVRDAAFEATSLGPSSPIGYVFASALVPVLAP 130


>tr|A5BDS4|A5BDS4_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_033512 PE=4 SV=1
Length = 610

Score = 33.1 bits (74), Expect = 7.2
Identities = 39/131 (29%), Positives = 55/131 (41%), Gaps = 28/131 (21%)
Frame = +2

Query: 17 MEDMRLPSPNDPLTLHEFLKRECNQLLLHSSNLKDLIFP--SEAHLHQLLQAKESST--- 181
+E M + +P DP T FL+ E L + + D+ P S LQ +E+ T
Sbjct: 478 VELMSMEAPTDPST---FLEPEIEAPTLATKSFLDVAVPFNSAFSSEYPLQKRETGTREE 534

Query: 182 ----------------TSPSNW----LWNLDA-TSKATSIFPSPDMGFTFKDLIDH--IH 292
T PS W W LDA +SK S+FP+P T + L+ H
Sbjct: 535 ISVPRLPKGNLMDEPITLPSYWGEFYNWFLDAKSSKVPSLFPAPKRFITPEPLLWHRAQM 594

Query: 293 APPLEIMKLST 325
P+E +KL T
Sbjct: 595 RSPIEYIKLLT 605


>tr|B6QHF4|B6QHF4_PENMA 60S ribosome biogenesis protein Mak11,
putative OS=Penicillium marneffei ATCC 18224
GN=PMAA_094100 PE=4 SV=1
Length = 492

Score = 33.1 bits (74), Expect = 7.2
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +2

Query: 77 RECNQLLLHSSNLKDLIFPSEAHLHQLLQAKESSTTSPSNWL-WNLDATSKA 229
RE LL HSS++ L FPS++ +LL A E +T S + WN+ +T KA
Sbjct: 159 REIGTLLHHSSSITTLYFPSKS---KLLSAAEDNTISVTRVRDWNVVSTVKA 207


>tr|B7PJM5|B7PJM5_IXOSC Putative uncharacterized protein OS=Ixodes
scapularis GN=IscW_ISCW004273 PE=4 SV=1
Length = 524

Score = 32.7 bits (73), Expect = 9.3
Identities = 21/96 (21%), Positives = 41/96 (42%)
Frame = +2

Query: 74 KRECNQLLLHSSNLKDLIFPSEAHLHQLLQAKESSTTSPSNWLWNLDATSKATSIFPSPD 253
KR + + LH +L EA + L S P + ++D+ + T ++ PD
Sbjct: 273 KRRSSSMALHEECSPELERSDEAVDGERLPVSTVSKPLPGDRKASVDSAAPKTGVYDQPD 332

Query: 254 MGFTFKDLIDHIHAPPLEIMKLSTQFKGVVPQLNGK 361
++ ++ + PPL+ Q+K + Q + K
Sbjct: 333 SYAAYRGILSYRRIPPLKKCVEQPQWKSLGEQKDSK 368