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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920201
Clone id YMU001_000134_C03
Library
Length 431
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000134_C03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GTGCAAACGATATTATCCCACATATGTACCAACAAATCACTACATGCAAAGTAGCCTTAC
ATCCACCATTACAAGCTGGGCCAGCAAAATTAGGTTAGTTTCAAAATCTGCTTTACCTTG
ATATCAATTTGCACGTCGAGGGGGGTCATAGTCACTGCCTTGCCTGTGTGGATCATCAAA
CATGCAAACATTATATCAGAGGACGCTAGATCTCCACGCATACCAGCAACGCTCCGGCTT
CGCCTTGCATGGCAAAGCTTCCCTTCACTGAAAGGCCGGCTAAGTAACTGATGCTCAACA
AAATCATGAGGTTGGAACATCTGCAACAACTACCGTTGCAGCTCTCTTTTGCTCTGCATT
TGCCTCATGTCATTGCCATCTGTCTTTCTCAACAGCTTCTATTGACCATGCTTGATCCCT
TGTGCAAGCTT
■■Homology search results ■■ -
sp_hit_id Q9HVX6
Definition sp|Q9HVX6|SYW_PSEAE Tryptophanyl-tRNA synthetase OS=Pseudomonas aeruginosa
Align length 52
Score (bit) 30.0
E-value 4.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920201|Adiantum capillus-veneris mRNA, clone:
YMU001_000134_C03.
         (431 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9HVX6|SYW_PSEAE Tryptophanyl-tRNA synthetase OS=Pseudomonas ...    30   4.2  
sp|P22561|WT1_MOUSE Wilms tumor protein homolog OS=Mus musculus ...    29   7.1  

>sp|Q9HVX6|SYW_PSEAE Tryptophanyl-tRNA synthetase OS=Pseudomonas
           aeruginosa GN=trpS PE=3 SV=1
          Length = 448

 Score = 30.0 bits (66), Expect = 4.2
 Identities = 19/52 (36%), Positives = 26/52 (50%)
 Frame = -1

Query: 296 EHQLLSRPFSEGKLCHARRSRSVAGMRGDLASSDIMFACLMIHTGKAVTMTP 141
           E  LLSR F++GK   A   R +AG   DL +    F   +   G+AV  +P
Sbjct: 376 EQLLLSRAFADGKAAGAVSKRLLAGETADLRAEGNAFGLWL--DGEAVAQSP 425


>sp|P22561|WT1_MOUSE Wilms tumor protein homolog OS=Mus musculus
           GN=Wt1 PE=1 SV=1
          Length = 449

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
 Frame = +2

Query: 191 LYQRTLDLHAY---QQRSGFALHGKASLH*KAG*VTDAQQNHEVGTSATTTVAALFCSAF 361
           LYQ T  L      Q   G  L G A+    +   T+ Q NH +G  +    A + C A 
Sbjct: 226 LYQMTSQLECMTWNQMNLGATLKGMAAGSSSSVKWTEGQSNHGIGYESENHTAPILCGAQ 285

Query: 362 ASCHCH 379
              H H
Sbjct: 286 YRIHTH 291
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920201|Adiantum capillus-veneris mRNA, clone:
YMU001_000134_C03.
         (431 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******