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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920205
Clone id YMU001_000134_C08
Library
Length 470
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000134_C08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GAGATATTACCTGCAGGTACTCAACTCGCTGCTAGTGAAGACAAAAGTAATGCTTTGTTT
CCTTTGCAAACTGGCTGCGGCATGGCACCCATCAAAGATTAAATGAATGAGATGTTGCAG
TGAGGACCCTTGCAGACCTCCTCCAAAAAAATGATCTCCTTAGTTTGACCATTCAAACAT
CTACTGGTCAAGCATTAAAAGCTTGATATGACTGGTCATGGTTGTTTGTCTGCATCCGCA
TCGAAAGTGCAGCGCTTCTATGATCACCTCCCTTTTGCTGTCCATTTCCTCCGGTGTTTC
TCCAAAAGGGTTTCCTTCTATTAGCTAGTGCTGATGCTATGTAAGGACAAATCAGTTTGC
TCTGACTATTCTGGTGTTTTGAAGCCGGGTTGTAATAGTGGGGCGGGCTTCTATTTTGAG
ACTCTGAAAACACATCTTCGCATTGAACAACTAAATCCACAGCGCAGGTT
■■Homology search results ■■ -
sp_hit_id Q835U8
Definition sp|Q835U8|IF2_ENTFA Translation initiation factor IF-2 OS=Enterococcus faecalis
Align length 82
Score (bit) 31.2
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920205|Adiantum capillus-veneris mRNA, clone:
YMU001_000134_C08.
         (470 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q835U8|IF2_ENTFA Translation initiation factor IF-2 OS=Entero...    31   2.4  
sp|Q00598|FENR_CYAPA Ferredoxin--NADP reductase, cyanelle OS=Cya...    31   3.1  
sp|Q7XUF4|CDKG2_ORYSJ Cyclin-dependent kinase G-2 OS=Oryza sativ...    31   3.1  
sp|A2XUW1|CDKG2_ORYSI Cyclin-dependent kinase G-2 OS=Oryza sativ...    31   3.1  

>sp|Q835U8|IF2_ENTFA Translation initiation factor IF-2
           OS=Enterococcus faecalis GN=infB PE=3 SV=1
          Length = 798

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
 Frame = -2

Query: 427 SESQNRSPPHYYNPASKHQNSQSKLICPYIASALANRRKPFWRNTGGNGQQKGGDHRSAA 248
           S +QNRS  +  N  ++++N+Q+         +  N+ +    N GGN Q +GG +R+  
Sbjct: 116 SNTQNRS--NQTNTNNQNRNTQNN------NGSTTNQNRTSQNNNGGNNQNRGGQNRNNN 167

Query: 247 LSMRMQTNN----HDQSYQAFN 194
                  NN    ++Q+   FN
Sbjct: 168 FGGGQNRNNRNNFNNQNRNRFN 189


>sp|Q00598|FENR_CYAPA Ferredoxin--NADP reductase, cyanelle
           OS=Cyanophora paradoxa GN=PETH PE=1 SV=1
          Length = 363

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 10  PAGTQLAASEDKSNALFPLQTGCGMAPIKD*MNEMLQ 120
           P GT +   ED+S  +  L TG G+AP +  +  M +
Sbjct: 199 PVGTTMLMPEDQSATIIMLATGTGIAPFRSFLRRMFE 235


>sp|Q7XUF4|CDKG2_ORYSJ Cyclin-dependent kinase G-2 OS=Oryza sativa
           subsp. japonica GN=CDKG-2 PE=2 SV=2
          Length = 710

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 16/60 (26%), Positives = 28/60 (46%)
 Frame = -2

Query: 436 DVFSESQNRSPPHYYNPASKHQNSQSKLICPYIASALANRRKPFWRNTGGNGQQKGGDHR 257
           D  +  +++   H+++P+ +HQ   S   C       A+RR+   R+ GG     G  HR
Sbjct: 20  DAEASRRSKEQQHHHHPSGRHQRGDSDPRCE------ADRRRDGGRSRGGRELSNGYGHR 73


>sp|A2XUW1|CDKG2_ORYSI Cyclin-dependent kinase G-2 OS=Oryza sativa
           subsp. indica GN=CDKG-2 PE=2 SV=1
          Length = 710

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 16/60 (26%), Positives = 28/60 (46%)
 Frame = -2

Query: 436 DVFSESQNRSPPHYYNPASKHQNSQSKLICPYIASALANRRKPFWRNTGGNGQQKGGDHR 257
           D  +  +++   H+++P+ +HQ   S   C       A+RR+   R+ GG     G  HR
Sbjct: 20  DAEASRRSKEQQHHHHPSGRHQRGDSDPRCE------ADRRRDGGRSRGGRELSNGYGHR 73
tr_hit_id A2ZUA3
Definition tr|A2ZUA3|A2ZUA3_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica
Align length 88
Score (bit) 33.1
E-value 7.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920205|Adiantum capillus-veneris mRNA, clone:
YMU001_000134_C08.
         (470 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A2ZUA3|A2ZUA3_ORYSJ Putative uncharacterized protein OS=Oryza...    33   7.1  

>tr|A2ZUA3|A2ZUA3_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_002125 PE=4 SV=1
          Length = 307

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
 Frame = -2

Query: 463 AVDLVVQCEDVFSESQNRSPPHYYN-PASKHQNSQSKLICPYIASALANR-RKPFWRNT- 293
           A +   Q + VFS S  RSP H  N  A +HQ+S   L  P+       R   P  R T 
Sbjct: 169 AKNRAAQMQQVFSASFGRSPVHLRNVHARRHQHSAHLLRIPFPTKRADKRSESPIPRTTP 228

Query: 292 ---GGNGQQKGGDHRSAALSMRMQTNNH 218
               G+  QK    +++++ ++M T+ H
Sbjct: 229 LTRSGSLPQKPSLLKTSSVRVQMHTSEH 256