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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920209
Clone id YMU001_000134_C12
Library
Length 539
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000134_C12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GAGATATTACCTGCAGGTACTCATTCCCTCCTAACCAGGCAGTAAACACTTGGTGCCACG
CGAACAAATATTTGGTAAAAGCTCTTCTTCAGTTGCTGTTAATAGAACCCTATCACCCCT
GCTCAGCCAAAACCAGTGGCATATGCTCAGCCTCCTGGGACAAGCAGGACTGCCCCCAAG
CATGCAGGTAACTAGGCACCTAACTAAGCGCCTACCTCAAAAAACAACAAGCAACAGGAT
AAAGGTAAGAGGATAGTTGACTCGGAGGGCTTTCAGTTGTCCAAAAGGACCTTCAAATCC
AGAAATGGACCTACAGGGTATACTTCACCCAATGTCTATGACGCTCTACAGGACATGCCT
TCTCCTGAGTCCTTAGCTATTATTGACTCTGTAGTCAACAAGTACAAAAACTACCAAGAC
CGTTGATCCTCCTGCCATAAATCTGGAGGTAACCATGAATGACGCAGAGTTAGAAGAAGG
GGATACACAAATCGTCCTGTCTACCCCTGACCCGTCTACCCTAAATAACTGTACATGAA
■■Homology search results ■■ -
sp_hit_id Q2VZV0
Definition sp|Q2VZV0|IF2_MAGMM Translation initiation factor IF-2 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264)
Align length 82
Score (bit) 35.4
E-value 0.18
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920209|Adiantum capillus-veneris mRNA, clone:
YMU001_000134_C12.
         (539 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q2VZV0|IF2_MAGMM Translation initiation factor IF-2 OS=Magnet...    35   0.18 
sp|Q2GXM1|SEC16_CHAGB COPII coat assembly protein SEC16 OS=Chaet...    33   1.2  
sp|P00521|ABL_MLVAB Tyrosine-protein kinase transforming protein...    32   1.5  
sp|P00520|ABL1_MOUSE Proto-oncogene tyrosine-protein kinase ABL1...    32   1.5  
sp|Q09564|PHLPP_CAEEL Protein phosphatase PHLPP-like protein OS=...    32   2.0  
sp|B4S3B3|KATG_PROA2 Catalase-peroxidase OS=Prosthecochloris aes...    30   7.5  
sp|Q04NU7|HEMH_LEPBJ Ferrochelatase OS=Leptospira borgpetersenii...    30   7.5  
sp|Q14738|2A5D_HUMAN Serine/threonine-protein phosphatase 2A 56 ...    30   7.5  
sp|Q6BKC2|SWR1_DEBHA Helicase SWR1 OS=Debaryomyces hansenii GN=S...    30   9.8  
sp|O95571|ETHE1_HUMAN Protein ETHE1, mitochondrial OS=Homo sapie...    30   9.8  
sp|A9MF16|CYSJ_SALAR Sulfite reductase [NADPH] flavoprotein alph...    30   9.8  
sp|Q28475|ADAM7_MACFA Disintegrin and metalloproteinase domain-c...    30   9.8  
sp|Q9JLN6|ADA28_MOUSE ADAM 28 OS=Mus musculus GN=Adam28 PE=1 SV=3      30   9.8  

>sp|Q2VZV0|IF2_MAGMM Translation initiation factor IF-2
           OS=Magnetospirillum magneticum (strain AMB-1 / ATCC
           700264) GN=infB PE=3 SV=1
          Length = 872

 Score = 35.4 bits (80), Expect = 0.18
 Identities = 26/82 (31%), Positives = 39/82 (47%)
 Frame = +1

Query: 109 PITPAQPKPVAYAQPPGTSRTAPKHAGN*APN*APTSKNNKQQDKGKRIVDSEGFQLSKR 288
           P+ PAQPKPVA A P G +   P+         A T +  +++++ K+   +      KR
Sbjct: 188 PVAPAQPKPVAAAAPAGDATAVPR---------ARTEEEEEEEERAKKRAAAHKPAPVKR 238

Query: 289 TFKSRNGPTGYTSPNVYDALQD 354
           T   R   TG  +  + DAL D
Sbjct: 239 TEPRRR--TGKLT--ITDALTD 256


>sp|Q2GXM1|SEC16_CHAGB COPII coat assembly protein SEC16
           OS=Chaetomium globosum GN=SEC16 PE=3 SV=1
          Length = 1865

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 31/92 (33%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
 Frame = +1

Query: 109 PITPAQPKPVAYAQPPGTSRTAPKHA--GN*APN*APTSKNNKQQDKGKRIVDSEGFQLS 282
           P++ AQP   A   PP T+  AP  A  G  AP   PT + NK Q      VD +G    
Sbjct: 461 PVSAAQPPTAAPYAPPSTAPPAPALAQFGYGAP--PPTQEKNKAQS----FVDKKG---- 510

Query: 283 KRTFKSRNGPTGYTSPNVYDALQDMPSPESLA 378
                      GYTSP  YD   ++  P+  A
Sbjct: 511 -----------GYTSP--YDLPMEVVKPKRRA 529


>sp|P00521|ABL_MLVAB Tyrosine-protein kinase transforming protein
           Abl OS=Abelson murine leukemia virus GN=ABL PE=1 SV=1
          Length = 746

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 24/76 (31%), Positives = 36/76 (47%)
 Frame = +1

Query: 109 PITPAQPKPVAYAQPPGTSRTAPKHAGN*APN*APTSKNNKQQDKGKRIVDSEGFQLSKR 288
           P+ P+ PKP + A+PPGT  T+P    + AP  AP+     QQ      +     ++S R
Sbjct: 573 PVPPSVPKPQSTAKPPGTP-TSPVSTPSTAP--APSPLAGDQQPSSAAFIPLISTRVSLR 629

Query: 289 TFKSRNGPTGYTSPNV 336
             K+R  P    S  +
Sbjct: 630 --KTRQPPERIASGTI 643


>sp|P00520|ABL1_MOUSE Proto-oncogene tyrosine-protein kinase ABL1
            OS=Mus musculus GN=Abl1 PE=1 SV=3
          Length = 1123

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 24/76 (31%), Positives = 36/76 (47%)
 Frame = +1

Query: 109  PITPAQPKPVAYAQPPGTSRTAPKHAGN*APN*APTSKNNKQQDKGKRIVDSEGFQLSKR 288
            P+ P+ PKP + A+PPGT  T+P    + AP  AP+     QQ      +     ++S R
Sbjct: 950  PVPPSVPKPQSTAKPPGTP-TSPVSTPSTAP--APSPLAGDQQPSSAAFIPLISTRVSLR 1006

Query: 289  TFKSRNGPTGYTSPNV 336
              K+R  P    S  +
Sbjct: 1007 --KTRQPPERIASGTI 1020


>sp|Q09564|PHLPP_CAEEL Protein phosphatase PHLPP-like protein
           OS=Caenorhabditis elegans GN=F43C1.1 PE=2 SV=2
          Length = 1036

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = +1

Query: 250 RIVDSEGFQLSKRTFKSRNGPTGYTSPNVYDALQDMPSPESLAIIDSVVNKYKNYQDR*S 429
           +++  E  QLS       +    Y   N+ D+L  MP P++L  +    N ++N  D  S
Sbjct: 355 KVIHCERLQLSSLHLSGESLTHVYADHNLLDSLVVMPLPQNLQTLSLSFNHFRNLPDWIS 414

Query: 430 SC 435
            C
Sbjct: 415 DC 416


>sp|B4S3B3|KATG_PROA2 Catalase-peroxidase OS=Prosthecochloris
           aestuarii (strain DSM 271 / SK 413) GN=katG PE=3 SV=1
          Length = 732

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = +1

Query: 226 NKQQDKGKRIVDSEGFQLSKRTFKSRNGPTGYTSPNVYDALQDMPSPESLAIIDSVVNKY 405
           NKQ      IV      + +   K+  G T   +P   DALQ+    ES ++++ + + +
Sbjct: 526 NKQVSLADMIVLGGCAAVEEAAGKAGTGVTVPFTPGRTDALQEQTDTESFSVLEPLADGF 585

Query: 406 KNYQDR 423
           +NY  +
Sbjct: 586 RNYMKK 591


>sp|Q04NU7|HEMH_LEPBJ Ferrochelatase OS=Leptospira borgpetersenii
           serovar Hardjo-bovis (strain JB197) GN=hemH PE=3 SV=1
          Length = 366

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +1

Query: 226 NKQQDKGKRIVDSEGFQLSKRT-FKSRNGPTGYTSPNVYDALQDM 357
           N   +  KR++  +GFQ    T F+SR GP+ +T PN    L+ +
Sbjct: 228 NSNVENLKRLLYEKGFQGKCHTSFQSRVGPSKWTEPNTITMLEQL 272


>sp|Q14738|2A5D_HUMAN Serine/threonine-protein phosphatase 2A 56 kDa
           regulatory subunit delta isoform OS=Homo sapiens
           GN=PPP2R5D PE=1 SV=1
          Length = 602

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 27/87 (31%), Positives = 37/87 (42%)
 Frame = +1

Query: 109 PITPAQPKPVAYAQPPGTSRTAPKHAGN*APN*APTSKNNKQQDKGKRIVDSEGFQLSKR 288
           P    QP+P A +QPP ++    K   N  P   PT  +  +   G +IV  E  Q S R
Sbjct: 38  PQPQPQPQPQAQSQPPSSN----KRPSNSTP--PPTQLSKIKYSGGPQIVKKERRQSSSR 91

Query: 289 TFKSRNGPTGYTSPNVYDALQDMPSPE 369
              S+N            AL+D P+ E
Sbjct: 92  FNLSKN-----RELQKLPALKDSPTQE 113


>sp|Q6BKC2|SWR1_DEBHA Helicase SWR1 OS=Debaryomyces hansenii GN=SWR1
           PE=3 SV=2
          Length = 1616

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 26/86 (30%), Positives = 37/86 (43%)
 Frame = +1

Query: 130 KPVAYAQPPGTSRTAPKHAGN*APN*APTSKNNKQQDKGKRIVDSEGFQLSKRTFKSRNG 309
           K V Y+ PP    T P H  +  P+  P    +    K   I+D   +      F S N 
Sbjct: 246 KAVKYSIPPPIV-THPSHIPSWVPD--PNHTESSFNSKDSEIID---YHPDAIQFVS-NS 298

Query: 310 PTGYTSPNVYDALQDMPSPESLAIID 387
            T YT+PN+   +Q+  +    AIID
Sbjct: 299 KTTYTTPNIQAKIQNFLASYKSAIID 324


>sp|O95571|ETHE1_HUMAN Protein ETHE1, mitochondrial OS=Homo sapiens
           GN=ETHE1 PE=1 SV=2
          Length = 254

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +2

Query: 35  PGSKHLVPREQIFGKSSSSVAVNRTLSPLLSQNQWHMLSLLGQAGLPPSMQV 190
           PG   + P     G + S+V   RTL+P L+ +    + ++G   LP   Q+
Sbjct: 186 PGDCLIYPAHDYHGFTVSTVEEERTLNPRLTLSCEEFVKIMGNLNLPKPQQI 237
tr_hit_id B4P2G0
Definition tr|B4P2G0|B4P2G0_DROYA GE16029 OS=Drosophila yakuba
Align length 94
Score (bit) 37.7
E-value 0.39
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920209|Adiantum capillus-veneris mRNA, clone:
YMU001_000134_C12.
         (539 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4P2G0|B4P2G0_DROYA GE16029 OS=Drosophila yakuba GN=GE16029 P...    38   0.39 
tr|B3N7S0|B3N7S0_DROER GG24640 OS=Drosophila erecta GN=GG24640 P...    35   3.3  
tr|B2B7A9|B2B7A9_PODAN Predicted CDS Pa_2_10480 OS=Podospora ans...    34   5.6  
tr|A3GHS0|A3GHS0_PICST Transcription factor involved in cell cyc...    34   5.6  
tr|Q71U12|Q71U12_MOUSE Metalloproteinase-disintegrin domain cont...    33   9.5  
tr|A3YZ43|A3YZ43_9SYNE Carboxysome shell protein OS=Synechococcu...    33   9.5  
tr|B4Q656|B4Q656_DROSI GD22950 OS=Drosophila simulans GN=GD22950...    33   9.5  

>tr|B4P2G0|B4P2G0_DROYA GE16029 OS=Drosophila yakuba GN=GE16029 PE=4
           SV=1
          Length = 830

 Score = 37.7 bits (86), Expect = 0.39
 Identities = 30/94 (31%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
 Frame = +1

Query: 106 NPITPAQPKPVAYAQP---PGTSRTAPKHAGN*APN*APTSKNNKQQDKGKRIVDSEGFQ 276
           N   P QP P A A+P   P  ++  PK     AP  AP ++ N QQ         +G  
Sbjct: 725 NKAVPKQPNPNANAKPAVAPKPAQATPKPGA--APPKAPANQANPQQ---------QGKA 773

Query: 277 LSKRTFKSRNGPTGYTSPNVYDALQDMPSPESLA 378
            +K +   + GPTG       +A +  PSP+S A
Sbjct: 774 ANKASPPKQTGPTGGQQKPAANAPKATPSPKSTA 807


>tr|B3N7S0|B3N7S0_DROER GG24640 OS=Drosophila erecta GN=GG24640 PE=4
           SV=1
          Length = 799

 Score = 34.7 bits (78), Expect = 3.3
 Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 3/94 (3%)
 Frame = +1

Query: 106 NPITPAQPKPVAYAQP---PGTSRTAPKHAGN*APN*APTSKNNKQQDKGKRIVDSEGFQ 276
           N     QP P A A+P   P  + + PK A   +P   P   N +QQ K           
Sbjct: 694 NKAVQKQPNPNANAKPAVAPKPAPSTPKPAAA-SPKAPPNQANAQQQGKAA--------- 743

Query: 277 LSKRTFKSRNGPTGYTSPNVYDALQDMPSPESLA 378
            SK +   + GPTG    +  +A +  PSP+S A
Sbjct: 744 -SKASPPKQTGPTGGQQKSAANASKATPSPKSAA 776


>tr|B2B7A9|B2B7A9_PODAN Predicted CDS Pa_2_10480 OS=Podospora
           anserina PE=4 SV=1
          Length = 754

 Score = 33.9 bits (76), Expect = 5.6
 Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
 Frame = +1

Query: 136 VAYAQPPGTSRTAPKHAGN*APN*APTSKNNKQQDKGKRIVDSEGFQ---LSKRTFKSRN 306
           V Y Q PGT+   P    + A N APTSK  + +D  K +  S   Q   L  R   S  
Sbjct: 35  VLYGQTPGTTGAPPTRVPSRADNRAPTSKEQEDEDIQKAVAASLAAQKPTLPPRPSSSAK 94

Query: 307 GPTG 318
           G  G
Sbjct: 95  GQFG 98


>tr|A3GHS0|A3GHS0_PICST Transcription factor involved in cell cycle
           dependent gene expression OS=Pichia stipitis GN=SWI6
           PE=4 SV=1
          Length = 711

 Score = 33.9 bits (76), Expect = 5.6
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = -1

Query: 488 VYPLLLTLRHSWLPPDLWQEDQRSW*FLYLLTTESIIAKDSGE 360
           ++  LLT   +WL PD+W  D + W F++ LT++S    DS +
Sbjct: 340 IFQSLLT---NWLYPDIWLLDNKRWSFMHHLTSDSAKKIDSSK 379


>tr|Q71U12|Q71U12_MOUSE Metalloproteinase-disintegrin domain
           containing protein TECADAM OS=Mus musculus GN=Adam28
           PE=2 SV=1
          Length = 651

 Score = 33.1 bits (74), Expect = 9.5
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = +3

Query: 30  PNQAVNTWCHANKYLVKAXXXXXXIEPYHPCSAKTSG-ICSASWDKQDCPQAC 185
           P +  N  CHA    +KA       E    C  K  G +C A+ D+ D P+ C
Sbjct: 429 PKECTNKCCHARTCKIKAGFQCALGECCEKCQLKKPGVVCRAAKDECDLPEVC 481


>tr|A3YZ43|A3YZ43_9SYNE Carboxysome shell protein OS=Synechococcus
           sp. WH 5701 GN=WH5701_11339 PE=4 SV=1
          Length = 786

 Score = 33.1 bits (74), Expect = 9.5
 Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
 Frame = +1

Query: 106 NPITPAQPKP-VAYAQPPGTSRTAPKHAGN*APN*APTSKNNKQQDKGKRIVDSEGFQLS 282
           +P  PA  +P ++ + PP TS +  +  GN      PT+K + Q +  + IV +    LS
Sbjct: 117 SPEPPAASRPTLSLSAPPSTSLSDRRSNGN-----RPTAKRSAQFNPSRAIVMARREALS 171

Query: 283 KRTFKSRNGPTGYTSPNVYDALQDMPSPE 369
           KR   +    +G T+  V  +  D+ S E
Sbjct: 172 KRGKSASTNSSGGTAAVVRQSNPDISSRE 200


>tr|B4Q656|B4Q656_DROSI GD22950 OS=Drosophila simulans GN=GD22950
           PE=4 SV=1
          Length = 653

 Score = 33.1 bits (74), Expect = 9.5
 Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
 Frame = +1

Query: 106 NPITPAQPKPVAY-AQPPGTSRTAPKHAGN*APN*APTSKNNKQQDKGKRIVDSEGFQLS 282
           N     QP P A  A  P  ++  PK A   A   A T++ N QQ +GK          +
Sbjct: 549 NKAVQKQPNPNAKPAVAPKPAQATPKPAA--ASPKASTNQANPQQQQGKAA--------N 598

Query: 283 KRTFKSRNGPTGYTSPNVYDALQDMPSPESLA 378
           K +   + GPTG    +  +A +  PSP+S+A
Sbjct: 599 KASPPKQAGPTGGQQKSAANASKATPSPKSVA 630