BP920211 |
Clone id |
YMU001_000134_D02 |
Library |
YMU01 |
Length |
505 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000134_D02. |
Accession |
BP920211 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
AGATGAAACAAGAGCATGGGAAAAGCAACGCTAGTAGTGATTTTGACGAGCCTCGACATC CACTCGACCTTGTATTTTGCAAGAAGAAGCGGAAACCAAGAGGAAAAGCTTCGAGTAAGA TTAGGACCATCAATGCGGTCGCACCCGCAGATACGACCAACATAGGTAAGAATATAAATA TGGTTAGGACAGGTTCAGAGTTAGATAGTCGCTTAGGTGTGAAAATAGTTGGAAAGAAAA TGAGAACAGCTGGTGTGAATAGTAGTGGTGAGAGTAGCAAGCAGGTGGGTATGCCAAGAG CTGTTGCCAATATGGTAGGAGCGCCGACGACTCTTGCGTCTGCTGCTGCCGCACAAAGGG CCATGCCTGACAGGTTTCAAGCTCCGGGGGGGTTTATCAATAGCAGAGGCCCTGGCATTT TGGGCTTTGACAATCAATGGTTGACTCCTGTGAAAAAGATGAGGACAGATGGAGGGAAAA GGAGACCCAGTCATGTGTAAGTAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q6EVK6 |
Definition |
sp|Q6EVK6|BRM_ARATH ATP-dependent helicase BRM OS=Arabidopsis thaliana |
Align length |
147 |
Score (bit) |
47.4 |
E-value |
4.0e-05 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A5B1Q9 |
Definition |
tr|A5B1Q9|A5B1Q9_VITVI Putative uncharacterized protein OS=Vitis vinifera |
Align length |
162 |
Score (bit) |
58.9 |
E-value |
1.0e-07 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP920211|Adiantum capillus-veneris mRNA, clone: YMU001_000134_D02. (505 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A5B1Q9|A5B1Q9_VITVI Putative uncharacterized protein OS=Vitis... 59 1e-07 tr|A7PZI5|A7PZI5_VITVI Chromosome chr15 scaffold_40, whole genom... 47 4e-04 tr|A2Q217|A2Q217_MEDTR HMG-I and HMG-Y, DNA-binding; Bromodomain... 45 0.002 tr|B7FN88|B7FN88_MEDTR Putative uncharacterized protein OS=Medic... 42 0.016 tr|Q6Z7C5|Q6Z7C5_ORYSJ Os02g0114000 protein OS=Oryza sativa subs... 41 0.028 tr|B8AGH3|B8AGH3_ORYSI Putative uncharacterized protein OS=Oryza... 41 0.028 tr|A3A2E2|A3A2E2_ORYSJ Putative uncharacterized protein OS=Oryza... 41 0.028 tr|A9T357|A9T357_PHYPA SWI/SNF class chromatin remodeling comple... 40 0.048 tr|A8V043|A8V043_9AQUI Guanylate kinase OS=Hydrogenivirga sp. 12... 37 0.71 tr|Q7Y244|Q7Y244_GOSBA Fiber protein Fb22 (Fragment) OS=Gossypiu... 36 1.2 tr|Q4TZS5|Q4TZS5_GOSHI Fb22 (Fragment) OS=Gossypium hirsutum PE=... 36 1.2 tr|O55656|O55656_9ALPH Helicase/primase complex subunit (Fragmen... 35 1.6 tr|A9HEY0|A9HEY0_GLUDA Putative ribonuclease protein OS=Gluconac... 35 1.6 tr|B5ZDI6|B5ZDI6_GLUDA Ribonuclease BN OS=Gluconacetobacter diaz... 35 1.6 tr|Q1NHS0|Q1NHS0_9SPHN Putative gluconate permease OS=Sphingomon... 35 2.1 tr|A9RSB9|A9RSB9_PHYPA SWI/SNF class chromatin remodeling comple... 34 4.5 tr|B0MX18|B0MX18_9BACT Putative uncharacterized protein OS=Alist... 34 4.6 tr|Q18652|Q18652_CAEEL Putative uncharacterized protein OS=Caeno... 33 9.9
>tr|A5B1Q9|A5B1Q9_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_024679 PE=4 SV=1 Length = 2238
Score = 58.9 bits (141), Expect = 1e-07 Identities = 51/162 (31%), Positives = 70/162 (43%), Gaps = 2/162 (1%) Frame = +3
Query: 18 GKSNASSDFDEP--RHPLDLVFCKKKRKPRGKASSKIRTINAVAPADTTNIGKNINMVRT 191 G S++ D P HP DLV KKKRK R K+++K R+ + P ++G++I Sbjct: 2122 GSSSSRDQDDSPLLTHPGDLVISKKKRKDREKSAAKPRS-GSSGPVSPPSMGRSIRSPGP 2180
Query: 192 GSELDSRLGVKIVGKKMRTAGVNSSGESSKQVGMPRAVANMVGXXXXXXXXXXXXXXMPD 371 GS + G S++Q +A A+ Sbjct: 2181 GS-------------------MQKDGRSTQQATHQQAWASQPAQ---------------- 2205
Query: 372 RFQAPGGFINSRGPGILGFDNQWLTPVKKMRTDGGKRRPSHV 497 QA GG S G G +G W PVK+MRTD GKRRPSH+ Sbjct: 2206 --QANGG---SGGGGTVG----WANPVKRMRTDAGKRRPSHL 2238
>tr|A7PZI5|A7PZI5_VITVI Chromosome chr15 scaffold_40, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00026891001 PE=4 SV=1 Length = 2105
Score = 47.4 bits (111), Expect = 4e-04 Identities = 48/162 (29%), Positives = 67/162 (41%), Gaps = 2/162 (1%) Frame = +3
Query: 18 GKSNASSDFDEP--RHPLDLVFCKKKRKPRGKASSKIRTINAVAPADTTNIGKNINMVRT 191 G S++ D P HP DLV KKKRK R K+++K R+ + P ++G++I Sbjct: 2003 GSSSSRDQDDSPLLTHPGDLVISKKKRKDREKSAAKPRS-GSSGPVSPPSMGRSIRSPE- 2060
Query: 192 GSELDSRLGVKIVGKKMRTAGVNSSGESSKQVGMPRAVANMVGXXXXXXXXXXXXXXMPD 371 G E++S T+ ++S Sbjct: 2061 GWEINS------------TSYTSTS----------------------------------- 2073
Query: 372 RFQAPGGFINSRGPGILGFDNQWLTPVKKMRTDGGKRRPSHV 497 A GG S G G +G W PVK+MRTD GKRRPSH+ Sbjct: 2074 ---ANGG---SGGGGTVG----WANPVKRMRTDAGKRRPSHL 2105
>tr|A2Q217|A2Q217_MEDTR HMG-I and HMG-Y, DNA-binding; Bromodomain; Helicase, C-terminal (Fragment) OS=Medicago truncatula GN=MtrDRAFT_AC149204g19v2 PE=4 SV=1 Length = 1069
Score = 45.1 bits (105), Expect = 0.002 Identities = 44/147 (29%), Positives = 53/147 (36%) Frame = +3
Query: 57 HPLDLVFCKKKRKPRGKASSKIRTINAVAPADTTNIGKNINMVRTGSELDSRLGVKIVGK 236 HP DLV CKKKR RG SS I + P I +V T ++ + Sbjct: 979 HPGDLVVCKKKRNERGDKSSVKHRIGSAGPVSPPKI-----VVHT-----------VLAE 1022
Query: 237 KMRTAGVNSSGESSKQVGMPRAVANMVGXXXXXXXXXXXXXXMPDRFQAPGGFINSRGPG 416 + T G S+ PRA G S G G Sbjct: 1023 RSPTPGSGST---------PRA----------------------------GHAHTSNGSG 1045
Query: 417 ILGFDNQWLTPVKKMRTDGGKRRPSHV 497 W PVK+MRTD GKRRPSH+ Sbjct: 1046 ---GSVGWANPVKRMRTDSGKRRPSHM 1069
>tr|B7FN88|B7FN88_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1 Length = 218
Score = 42.0 bits (97), Expect = 0.016 Identities = 40/147 (27%), Positives = 53/147 (36%) Frame = +3
Query: 57 HPLDLVFCKKKRKPRGKASSKIRTINAVAPADTTNIGKNINMVRTGSELDSRLGVKIVGK 236 HP +LV CKK+R R K+ K RT V+P+ Sbjct: 132 HPGELVVCKKRRNEREKSLVKSRT-GPVSPS----------------------------- 161
Query: 237 KMRTAGVNSSGESSKQVGMPRAVANMVGXXXXXXXXXXXXXXMPDRFQAPGGFINSRGPG 416 MR+ G +G K V + + G P Q GG + Sbjct: 162 -MRSPG---AGSVPKDVRLTQQTQGWTG--------------QPSSQQPNGGSVG----- 198
Query: 417 ILGFDNQWLTPVKKMRTDGGKRRPSHV 497 W PVK++RTD GKRRPSH+ Sbjct: 199 -------WANPVKRLRTDSGKRRPSHM 218
>tr|Q6Z7C5|Q6Z7C5_ORYSJ Os02g0114000 protein OS=Oryza sativa subsp. japonica GN=P0036E06.8 PE=4 SV=1 Length = 2200
Score = 41.2 bits (95), Expect = 0.028 Identities = 48/151 (31%), Positives = 56/151 (37%), Gaps = 3/151 (1%) Frame = +3
Query: 54 RHPLDLVFCKKKRKPR---GKASSKIRTINAVAPADTTNIGKNINMVRTGSELDSRLGVK 224 RHP D+ KKKR R G SS RT P TN G R+G Sbjct: 2091 RHPTDMFIVKKKRDRRPSLGSPSSSGRT----GPLSPTNAG--------------RMGPA 2132
Query: 225 IVGKKMRTAGVNSSGESSKQVGMPRAVANMVGXXXXXXXXXXXXXXMPDRFQAPGGFINS 404 + RT S + + A+ V DR GG S Sbjct: 2133 PSPRGARTPFQRDPHPSQQSMHSAGWGAHSV--------------QQSDR----GG---S 2171
Query: 405 RGPGILGFDNQWLTPVKKMRTDGGKRRPSHV 497 PGI D QW P K+ RTD GKRRPSH+ Sbjct: 2172 SSPGI--GDIQWAKPTKRSRTDSGKRRPSHM 2200
>tr|B8AGH3|B8AGH3_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_05562 PE=4 SV=1 Length = 2184
Score = 41.2 bits (95), Expect = 0.028 Identities = 48/151 (31%), Positives = 56/151 (37%), Gaps = 3/151 (1%) Frame = +3
Query: 54 RHPLDLVFCKKKRKPR---GKASSKIRTINAVAPADTTNIGKNINMVRTGSELDSRLGVK 224 RHP D+ KKKR R G SS RT P TN G R+G Sbjct: 2075 RHPTDMFIVKKKRDRRPSLGSPSSSGRT----GPLSPTNAG--------------RMGPA 2116
Query: 225 IVGKKMRTAGVNSSGESSKQVGMPRAVANMVGXXXXXXXXXXXXXXMPDRFQAPGGFINS 404 + RT S + + A+ V DR GG S Sbjct: 2117 PSPRGARTPFQRDPHPSQQSMHSAGWGAHSV--------------QQSDR----GG---S 2155
Query: 405 RGPGILGFDNQWLTPVKKMRTDGGKRRPSHV 497 PGI D QW P K+ RTD GKRRPSH+ Sbjct: 2156 SSPGI--GDIQWAKPTKRSRTDSGKRRPSHM 2184
>tr|A3A2E2|A3A2E2_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_004964 PE=4 SV=1 Length = 2233
Score = 41.2 bits (95), Expect = 0.028 Identities = 48/151 (31%), Positives = 56/151 (37%), Gaps = 3/151 (1%) Frame = +3
Query: 54 RHPLDLVFCKKKRKPR---GKASSKIRTINAVAPADTTNIGKNINMVRTGSELDSRLGVK 224 RHP D+ KKKR R G SS RT P TN G R+G Sbjct: 2124 RHPTDMFIVKKKRDRRPSLGSPSSSGRT----GPLSPTNAG--------------RMGPA 2165
Query: 225 IVGKKMRTAGVNSSGESSKQVGMPRAVANMVGXXXXXXXXXXXXXXMPDRFQAPGGFINS 404 + RT S + + A+ V DR GG S Sbjct: 2166 PSPRGARTPFQRDPHPSQQSMHSAGWGAHSV--------------QQSDR----GG---S 2204
Query: 405 RGPGILGFDNQWLTPVKKMRTDGGKRRPSHV 497 PGI D QW P K+ RTD GKRRPSH+ Sbjct: 2205 SSPGI--GDIQWAKPTKRSRTDSGKRRPSHM 2233
>tr|A9T357|A9T357_PHYPA SWI/SNF class chromatin remodeling complex protein OS=Physcomitrella patens subsp. patens GN=CHR1534 PE=4 SV=1 Length = 2529
Score = 40.4 bits (93), Expect = 0.048 Identities = 44/151 (29%), Positives = 55/151 (36%), Gaps = 4/151 (2%) Frame = +3
Query: 57 HPLDLVFCKKKRKPR----GKASSKIRTINAVAPADTTNIGKNINMVRTGSELDSRLGVK 224 HP+DLV KKKRK R + S + INA DTT G N+ G ++R + Sbjct: 2428 HPVDLVIHKKKRKGREHTGSRTVSSLLVINAEDTRDTTARGFNV-----GPSWNTRAPLP 2482
Query: 225 IVGKKMRTAGVNSSGESSKQVGMPRAVANMVGXXXXXXXXXXXXXXMPDRFQAPGGFINS 404 V + R V S G S + P V Sbjct: 2483 -VAPRSRVPTV-SPGSSRRSALQPNTKVGAV----------------------------- 2511
Query: 405 RGPGILGFDNQWLTPVKKMRTDGGKRRPSHV 497 T +KK RTDGGKRRPSH+ Sbjct: 2512 -------------TVLKKSRTDGGKRRPSHL 2529
>tr|A8V043|A8V043_9AQUI Guanylate kinase OS=Hydrogenivirga sp. 128-5-R1-1 GN=gmk PE=3 SV=1 Length = 496
Score = 36.6 bits (83), Expect = 0.71 Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 4/81 (4%) Frame = -1
Query: 310 LATALGIPTCLLLSP--LLFTPAVLIFFPTIFTPKR--LSNSEPVLTIFIFLPMLVVSAG 143 L +A+G+P +L P ++ A ++FF +FT R +S + + + L + + G Sbjct: 7 LVSAVGVPNFTVLIPEIIILITAFIVFFEELFTKNRILISATTVIGLLLSLLSIFTIKQG 66
Query: 142 ATALMVLILLEAFPLGFRFFL 80 L L +++ F L F+ FL Sbjct: 67 DLTLYGLYVVDGFSLLFKLFL 87
>tr|Q7Y244|Q7Y244_GOSBA Fiber protein Fb22 (Fragment) OS=Gossypium barbadense PE=2 SV=1 Length = 86
Score = 35.8 bits (81), Expect = 1.2 Identities = 14/18 (77%), Positives = 15/18 (83%) Frame = +3
Query: 438 WLTPVKKMRTDGGKRRPS 491 W PVKK+RTD GKRRPS Sbjct: 67 WANPVKKLRTDAGKRRPS 84
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