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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920215
Clone id YMU001_000134_D06
Library
Length 408
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000134_D06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GCGAGAGCGGTACCAAATCGAGGCAAACTCGTGAATACTAGATGTAACGTTCAAGTAAAA
GGAACGAAGGAAAAGGGTCAACCAGTGAGACGATGAGGGATAAGCTTCACCGTCGAGAGG
GGAACAGCCCAGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGGTAAAGGAGGTAG
GAGTGCAAAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCACCCTTGAAAGAGTGCGTAAT
AGCTCACTGATCAAGCGCTCTTGCGCCGAAGATGAGCGGGACTAAGCGGTCTGCCGAAGC
TGTGGGATGTCAAAAAACATCGGTAGGGGAGCGTTCCGCCCCAGATGGAAGCACCAGTGC
GAGCAGGTGTGGACGAAGCGGAAGCGAGAATGTCGGCTTGAGTAACGA
■■Homology search results ■■ -
sp_hit_id Q80WV7
Definition sp|Q80WV7|SRR2L_MOUSE SRRM2-like protein OS=Mus musculus
Align length 87
Score (bit) 33.1
E-value 0.44
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920215|Adiantum capillus-veneris mRNA, clone:
YMU001_000134_D06.
         (408 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q80WV7|SRR2L_MOUSE SRRM2-like protein OS=Mus musculus GN=MNCb...    33   0.44 
sp|Q3UG20|MLL5_MOUSE Histone-lysine N-methyltransferase MLL5 OS=...    32   0.97 
sp|Q2U968|SEC16_ASPOR COPII coat assembly protein sec16 OS=Asper...    30   2.8  
sp|Q566X8|DMX1B_DANRE Diencephalon/mesencephalon homeobox protei...    30   2.8  
sp|P28329|CLAT_HUMAN Choline O-acetyltransferase OS=Homo sapiens...    30   2.8  
sp|P91599|LIN28_CAERE Protein lin-28 OS=Caenorhabditis remanei G...    29   6.5  
sp|Q0VCW3|BANP_BOVIN Protein BANP OS=Bos taurus GN=BANP PE=2 SV=1      29   8.2  

>sp|Q80WV7|SRR2L_MOUSE SRRM2-like protein OS=Mus musculus
           GN=MNCb-4760 PE=2 SV=1
          Length = 648

 Score = 33.1 bits (74), Expect = 0.44
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
 Frame = +2

Query: 110 PSRGEQPRSPAKAPK*PLSGKGGRSA-KTARRFA*KQPPLKECVIAH*SSALAPKMSGTK 286
           P+RG+  +SP  AP     G+GGR+A  TARR   ++   +       SSA AP+  G +
Sbjct: 354 PARGKDSQSPRSAPS--SQGRGGRAAGGTARRRRRRRRRRRSR-----SSANAPRRRGRR 406

Query: 287 RSAEAV--GCQKTSVGERSAPDGSTSA 361
           R+  A   G  ++  G  S+ D    A
Sbjct: 407 RTKPAPPRGSSRSLSGAHSSSDSGGGA 433


>sp|Q3UG20|MLL5_MOUSE Histone-lysine N-methyltransferase MLL5 OS=Mus
            musculus GN=Mll5 PE=2 SV=2
          Length = 1868

 Score = 32.0 bits (71), Expect = 0.97
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +2

Query: 251  SSALAPKMSGTKRSAEAVGCQKTSVGERSAPDGSTSASRCGRSGS 385
            + +LAP +S      +A G + TS  E  +PD S S S+  + GS
Sbjct: 1320 AQSLAPSLSELMADPDAEGTEATSTSECPSPDTSQSPSKTSKPGS 1364


>sp|Q2U968|SEC16_ASPOR COPII coat assembly protein sec16
            OS=Aspergillus oryzae GN=sec16 PE=3 SV=1
          Length = 1843

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 35/116 (30%), Positives = 41/116 (35%), Gaps = 7/116 (6%)
 Frame = +2

Query: 59   KERRKRVNQ*DDEG*ASPSRGEQPRSPAKAPK*PLSGKGGRSAKTARRFA*KQPPLKECV 238
            KE +K VN+ D    AS SRG  P   A AP    SG     A +       +PP     
Sbjct: 1699 KELKKWVNKKDPNS-ASVSRGTPPPPKASAPSRSASGSTAPPAASMGLGLDSRPPSSAGA 1757

Query: 239  IAH*SS-------ALAPKMSGTKRSAEAVGCQKTSVGERSAPDGSTSASRCGRSGS 385
                SS       A  P M GT RSA       T     S P     A+    + S
Sbjct: 1758 PPSLSSSPAPPSLAAPPPMLGTARSASTSAAMPTPPIGSSLPPPPRPATSLSNASS 1813


>sp|Q566X8|DMX1B_DANRE Diencephalon/mesencephalon homeobox protein
           1-B OS=Danio rerio GN=dmbx1b PE=2 SV=1
          Length = 369

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 22/80 (27%), Positives = 35/80 (43%)
 Frame = +2

Query: 59  KERRKRVNQ*DDEG*ASPSRGEQPRSPAKAPK*PLSGKGGRSAKTARRFA*KQPPLKECV 238
           KE+ +R+ +   EG     + E P   A+AP  PL G+G  SA +             C 
Sbjct: 130 KEQLQRLKEAGTEGAQDEGKEEAPPVEAQAPPSPLDGRGLTSAPS-------------CE 176

Query: 239 IAH*SSALAPKMSGTKRSAE 298
           +    +  +P+ SG +  AE
Sbjct: 177 LNEEVNVTSPEQSGAESGAE 196


>sp|P28329|CLAT_HUMAN Choline O-acetyltransferase OS=Homo sapiens
           GN=CHAT PE=1 SV=3
          Length = 748

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 19/63 (30%), Positives = 24/63 (38%)
 Frame = -3

Query: 361 RTGASIWGGTLPYRCFLTSHSFGRPLSPAHLRRKSA*SVSYYALFQGWLLLGKPPGCLCT 182
           R  AS+  G L Y+  L SHS     +   L  +      YY LF  + L G     L  
Sbjct: 233 RFAASLISGVLSYKALLDSHSIPTDCAKGQLSGQPLCMKQYYGLFSSYRLPGHTQDTLVA 292

Query: 181 PTS 173
             S
Sbjct: 293 QNS 295


>sp|P91599|LIN28_CAERE Protein lin-28 OS=Caenorhabditis remanei
           GN=lin-28 PE=2 SV=1
          Length = 214

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +1

Query: 256 RSCAEDERD*AVCRSCGMSKNIGRGAFRPRWKHQCEQVWTKRKRECRL 399
           +SC   + D  VC +CG  +++       R KH+ EQV  +     RL
Sbjct: 152 KSCPNVKTDAKVCYTCGSEEHVSSICPERRRKHRPEQVAAEEAEAARL 199


>sp|Q0VCW3|BANP_BOVIN Protein BANP OS=Bos taurus GN=BANP PE=2 SV=1
          Length = 503

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 335 SAPDGSTSASRCGRSGSENVG 397
           S  + S S S CG+SGS+N+G
Sbjct: 187 SGSEASDSVSNCGQSGSQNIG 207
tr_hit_id A6N1H4
Definition tr|A6N1H4|A6N1H4_ORYSI Retrotransposon protein OS=Oryza sativa subsp. indica
Align length 77
Score (bit) 111.0
E-value 2.0e-23
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920215|Adiantum capillus-veneris mRNA, clone:
YMU001_000134_D06.
         (408 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6N1H4|A6N1H4_ORYSI Retrotransposon protein OS=Oryza sativa s...   111   2e-23
tr|B7FGU0|B7FGU0_MEDTR Putative uncharacterized protein OS=Medic...   103   4e-21
tr|Q9RXQ4|Q9RXQ4_DEIRA Putative uncharacterized protein OS=Deino...    74   4e-12
tr|Q9RS75|Q9RS75_DEIRA Putative uncharacterized protein OS=Deino...    74   4e-12
tr|B3D9S7|B3D9S7_BURM1 Putative uncharacterized protein OS=Burkh...    62   2e-08
tr|A1IW39|A1IW39_9LAMI Putative uncharacterized protein ophh-69 ...    57   4e-07
tr|Q0JIM3|Q0JIM3_ORYSJ Photosystem I P700 chlorophyll A apoprote...    55   1e-06
tr|Q0MX19|Q0MX19_ARAHY Leucine rich protein OS=Arachis hypogaea ...    51   3e-05
tr|A1HM07|A1HM07_9FIRM Putative uncharacterized protein OS=Therm...    41   0.034
tr|Q6AV58|Q6AV58_ORYSJ Putative uncharacterized protein OSJNBb01...    37   0.38 
tr|B1W0D5|B1W0D5_STRGG Putative Ku70/Ku80 protein OS=Streptomyce...    33   7.2  
tr|A9FIL2|A9FIL2_SORC5 Probable histone H1 protein OS=Sorangium ...    33   7.2  
tr|A7A2J0|A7A2J0_BIFAD Putative uncharacterized protein OS=Bifid...    33   9.4  

>tr|A6N1H4|A6N1H4_ORYSI Retrotransposon protein OS=Oryza sativa
           subsp. indica PE=4 SV=1
          Length = 109

 Score =  111 bits (278), Expect = 2e-23
 Identities = 59/77 (76%), Positives = 61/77 (79%)
 Frame = +3

Query: 6   SGTKSRQTREY*M*RSSKRNEGKGSTSETMRDKLHRREGNSPDHQLRPLNDRSVVKEVGV 185
           SGTKSRQT      R   +  G  S SETM DKLHRREGNSPDHQLRPLNDRSV+KEVGV
Sbjct: 36  SGTKSRQTLNT---RYDPKITGVRSASETMGDKLHRREGNSPDHQLRPLNDRSVIKEVGV 92

Query: 186 QRQPGGLPRSSHP*KSA 236
           QRQPGGLPRSSHP KSA
Sbjct: 93  QRQPGGLPRSSHPLKSA 109


>tr|B7FGU0|B7FGU0_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=4 SV=1
          Length = 102

 Score =  103 bits (257), Expect = 4e-21
 Identities = 54/74 (72%), Positives = 58/74 (78%)
 Frame = +3

Query: 3   ESGTKSRQTREY*M*RSSKRNEGKGSTSETMRDKLHRREGNSPDHQLRPLNDRSVVKEVG 182
           ESGTKSRQT       +++      S SE M DKLHRREGNSPDHQLRPLNDRSV+KEVG
Sbjct: 35  ESGTKSRQTL------NTRYPWRVKSASEAMGDKLHRREGNSPDHQLRPLNDRSVIKEVG 88

Query: 183 VQRQPGGLPRSSHP 224
           VQRQPGGLPRSSHP
Sbjct: 89  VQRQPGGLPRSSHP 102


>tr|Q9RXQ4|Q9RXQ4_DEIRA Putative uncharacterized protein
           OS=Deinococcus radiodurans GN=DR_0254 PE=4 SV=1
          Length = 139

 Score = 73.9 bits (180), Expect = 4e-12
 Identities = 35/49 (71%), Positives = 37/49 (75%)
 Frame = -3

Query: 286 LSPAHLRRKSA*SVSYYALFQGWLLLGKPPGCLCTPTSFTTERSFRGLS 140
           LSP H RR     VSYYALF+GWLLL +PPGCLC  TS TTERSFR LS
Sbjct: 91  LSPDHFRRIVTRPVSYYALFEGWLLLSQPPGCLCDDTSLTTERSFRDLS 139


>tr|Q9RS75|Q9RS75_DEIRA Putative uncharacterized protein
           OS=Deinococcus radiodurans GN=DR_2252 PE=4 SV=1
          Length = 133

 Score = 73.9 bits (180), Expect = 4e-12
 Identities = 35/49 (71%), Positives = 37/49 (75%)
 Frame = -3

Query: 286 LSPAHLRRKSA*SVSYYALFQGWLLLGKPPGCLCTPTSFTTERSFRGLS 140
           LSP H RR     VSYYALF+GWLLL +PPGCLC  TS TTERSFR LS
Sbjct: 85  LSPDHFRRIVTRPVSYYALFEGWLLLSQPPGCLCDDTSLTTERSFRDLS 133


>tr|B3D9S7|B3D9S7_BURM1 Putative uncharacterized protein
           OS=Burkholderia multivorans (strain ATCC 17616 / 249)
           GN=BMULJ_05092 PE=4 SV=1
          Length = 123

 Score = 61.6 bits (148), Expect = 2e-08
 Identities = 36/81 (44%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
 Frame = -3

Query: 403 TQADILASASSTPARTGASIWGGTLPYR-CFLTSHSFGRPLSPAHLRRKSA*SVSYYALF 227
           T   I  S +S+      S   GTL Y  C   S +    L+P HL R++  SVSYYA F
Sbjct: 43  THVSIRTSDTSSTLYKAPSQAYGTLSYHACKHASAASVYGLAPLHLPRRTTRSVSYYAFF 102

Query: 226 QGWLLLGKPPGCLCTPTSFTT 164
           +GWLLL +PP C   PTSF T
Sbjct: 103 KGWLLLSQPPDCFSLPTSFPT 123


>tr|A1IW39|A1IW39_9LAMI Putative uncharacterized protein ophh-69
           (Fragment) OS=Phillyrea latifolia GN=ophh-69 PE=2 SV=1
          Length = 166

 Score = 57.4 bits (137), Expect = 4e-07
 Identities = 29/44 (65%), Positives = 33/44 (75%)
 Frame = +2

Query: 275 SGTKRSAEAVGCQKTSVGERSAPDGSTSASRCGRSGSENVGLSN 406
           +G  +   AVGC+ TSVGERSA +GS  AS  GRSGSENVGLSN
Sbjct: 100 AGDVQGCRAVGCKNTSVGERSALEGSPRASSGGRSGSENVGLSN 143



 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 27/36 (75%), Positives = 29/36 (80%)
 Frame = +2

Query: 299 AVGCQKTSVGERSAPDGSTSASRCGRSGSENVGLSN 406
           AVGC+ TSVGERSA +GS   S  GRSGSENVGLSN
Sbjct: 3   AVGCKNTSVGERSALEGSPRVSSGGRSGSENVGLSN 38


>tr|Q0JIM3|Q0JIM3_ORYSJ Photosystem I P700 chlorophyll A apoprotein
           OS=Oryza sativa subsp. japonica GN=Os01g0790900 PE=3
           SV=1
          Length = 1546

 Score = 55.5 bits (132), Expect = 1e-06
 Identities = 24/29 (82%), Positives = 25/29 (86%)
 Frame = -3

Query: 340 GGTLPYRCFLTSHSFGRPLSPAHLRRKSA 254
           GGTLPYRC LTSHSFGR LSP HL+RK A
Sbjct: 603 GGTLPYRCILTSHSFGRSLSPVHLQRKGA 631


>tr|Q0MX19|Q0MX19_ARAHY Leucine rich protein OS=Arachis hypogaea
           PE=2 SV=1
          Length = 182

 Score = 51.2 bits (121), Expect = 3e-05
 Identities = 34/73 (46%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
 Frame = -2

Query: 407 RYSSRHSRFRFVHTCSHWCFHLGRNAPLPMFFD--IPQLRQTAXXXXXSAQERLISELLR 234
           RYS  HS FR +       F   RNAPLP+  +  I  L         SA +   SELLR
Sbjct: 100 RYSCHHSHFRTLQPSLQSTFTAVRNAPLPLQAEPVIRSLGVLLSPVTLSAPDHSTSELLR 159

Query: 233 TLSRVAASRQTSW 195
           TLSRVAAS+ TSW
Sbjct: 160 TLSRVAASKPTSW 172


>tr|A1HM07|A1HM07_9FIRM Putative uncharacterized protein
           OS=Thermosinus carboxydivorans Nor1 GN=TcarDRAFT_0446
           PE=4 SV=1
          Length = 36

 Score = 40.8 bits (94), Expect = 0.034
 Identities = 19/31 (61%), Positives = 26/31 (83%)
 Frame = +1

Query: 187 KDSQEVCLEAATLERVRNSSLIKRSCAEDER 279
           K++Q+V LEAA ++RVRNSSL++  CAED R
Sbjct: 5   KNNQDVGLEAAIIQRVRNSSLVEWRCAEDVR 35


>tr|Q6AV58|Q6AV58_ORYSJ Putative uncharacterized protein
           OSJNBb0101N11.3 OS=Oryza sativa subsp. japonica
           GN=OSJNBb0101N11.3 PE=4 SV=1
          Length = 245

 Score = 37.4 bits (85), Expect = 0.38
 Identities = 19/31 (61%), Positives = 22/31 (70%)
 Frame = +2

Query: 308 CQKTSVGERSAPDGSTSASRCGRSGSENVGL 400
           C+K + GERSA +GS   S   RSGSENVGL
Sbjct: 110 CRKQAEGERSALEGSNRESGGRRSGSENVGL 140