BP920222
Clone id YMU001_000134_E01
Library
Length 508
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000134_E01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
GCGGCTTATTCCACTCGACCAAGATACAGAGAATAGCCTCGAGAACAAACCTTTATCAAT
GGAGATCTACTTTTGAGACAGCCTACTTACTGTGATGGAGACAATGTCAAGCACAACTCT
GGCACAACTCATGATAGATCTTACATGTGAAGAACTTCCACTTTTGCCGGAATTGTATGC
ATTCAGTCTCAACAATAGAAAGGTGCTTACTAAATCGATAAATTTTGATTGTCTTTAATA
CACTATGACTGAATCTAACTTTTTCTTCTTTTCAGATTCCAAGGCGCAAGGAGAAAAAAA
CATTGTGCAAGGAGTCCATAACAAATACACTTCACTTAATTGCTTCCACCGGAAGTTAGG
TCACATACCTTGTGCACGCAAAGAGCTTTGATGCCATGCAAACCATGATGTACTCTTCAA
AATGACTAATGCAGAGATATTTTTTGGCGCTCAAAAAATGTTTCAAAAATGTATATTTTC
AATGTTTCAAAACTTTACGTATTGTGTT
■■Homology search results ■■ -
sp_hit_id Q09FY8
Definition sp|Q09FY8|YCF1_PLAOC Putative membrane protein ycf1 OS=Platanus occidentalis
Align length 21
Score (bit) 31.6
E-value 2.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920222|Adiantum capillus-veneris mRNA, clone:
YMU001_000134_E01.
(508 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q09FY8|YCF1_PLAOC Putative membrane protein ycf1 OS=Platanus ... 32 2.3
sp|Q9D9X6|ZSWM2_MOUSE Zinc finger SWIM domain-containing protein... 31 3.9

>sp|Q09FY8|YCF1_PLAOC Putative membrane protein ycf1 OS=Platanus
occidentalis GN=ycf1 PE=3 SV=1
Length = 1915

Score = 31.6 bits (70), Expect = 2.3
Identities = 11/21 (52%), Positives = 18/21 (85%)
Frame = +1

Query: 52 FINGDLLLRQPTYCDGDNVKH 114
F+NG++L R P +C+G+NVK+
Sbjct: 1829 FLNGNVLDRNPVFCNGNNVKN 1849


>sp|Q9D9X6|ZSWM2_MOUSE Zinc finger SWIM domain-containing protein 2
OS=Mus musculus GN=Zswim2 PE=2 SV=1
Length = 631

Score = 30.8 bits (68), Expect = 3.9
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = -1

Query: 265 EKVRFSHSVLKTIKIYRFSKHLSIVETECIQFRQKWKFFTCK--IYHELCQSCA*HCLHH 92
E+ + S+ ++ + R KHL I C Q + + + C + + LCQ C C H
Sbjct: 210 EEFKNSNKLITISEKERLDKHLGIPCNNCNQLPIEGRCYKCTECVEYHLCQECFDSCCHS 269

Query: 91 S 89
S
Sbjct: 270 S 270


tr_hit_id Q57ZY3
Definition tr|Q57ZY3|Q57ZY3_HUMAN Putative uncharacterized protein MGC33890 (Fragment) OS=Homo sapiens
Align length 61
Score (bit) 33.5
E-value 6.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920222|Adiantum capillus-veneris mRNA, clone:
YMU001_000134_E01.
(508 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q57ZY3|Q57ZY3_HUMAN Putative uncharacterized protein MGC33890... 33 6.1
tr|B3KXV6|B3KXV6_HUMAN cDNA FLJ46125 fis, clone TESTI2040377, hi... 33 6.1
tr|Q8IEA1|Q8IEA1_PLAF7 Putative uncharacterized protein MAL13P1.... 29 8.0

>tr|Q57ZY3|Q57ZY3_HUMAN Putative uncharacterized protein MGC33890
(Fragment) OS=Homo sapiens GN=MGC33890 PE=2 SV=1
Length = 538

Score = 33.5 bits (75), Expect = 6.1
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = -1

Query: 265 EKVRFSHSVLKTIKIYRFSKHLSIVETECIQFRQKWKFFTCK--IYHELCQSCA*HCLHH 92
E+ + S ++ + R KHL I C QF + K + C I + LCQ C C H
Sbjct: 114 EEFKNSSKLVAAAEKERLDKHLGIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSCCHL 173

Query: 91 S 89
S
Sbjct: 174 S 174


>tr|B3KXV6|B3KXV6_HUMAN cDNA FLJ46125 fis, clone TESTI2040377,
highly similar to Zinc finger SWIM domain-containing
protein 2 (Zinc finger, SWIM-type containing 2) OS=Homo
sapiens GN=ZSWIM2 PE=2 SV=1
Length = 633

Score = 33.5 bits (75), Expect = 6.1
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = -1

Query: 265 EKVRFSHSVLKTIKIYRFSKHLSIVETECIQFRQKWKFFTCK--IYHELCQSCA*HCLHH 92
E+ + S ++ + R KHL I C QF + K + C I + LCQ C C H
Sbjct: 209 EEFKNSSKLVAAAEKERLDKHLGIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSCCHL 268

Query: 91 S 89
S
Sbjct: 269 S 269


>tr|Q8IEA1|Q8IEA1_PLAF7 Putative uncharacterized protein MAL13P1.116
OS=Plasmodium falciparum (isolate 3D7) GN=MAL13P1.116
PE=4 SV=1
Length = 3347

Score = 28.9 bits (63), Expect(2) = 8.0
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2

Query: 239 YTMTESNFFFFSDSKAQGEKNIVQGVHNKYTSLN 340
Y M +SN +F K + KNI + VHNK + N
Sbjct: 2871 YHMLDSNLKYFKWYKQEQHKNIKKMVHNKIANQN 2904



Score = 22.7 bits (47), Expect(2) = 8.0
Identities = 7/31 (22%), Positives = 19/31 (61%)
Frame = +1

Query: 43 EQTFINGDLLLRQPTYCDGDNVKHNSGTTHD 135
E+ F+N + ++ + +Y D +N +N+ ++
Sbjct: 2833 EEKFLNKESIIMKNSYSDDNNHNNNNNNNYN 2863