NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920234
Clone id YMU001_000134_F03
Library
Length 195
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000134_F03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GTGACCAATGATCAGCGGGTTGAATCTAGTGCAGTGCGGACTGCACACGAGGGGGTTACT
CCGCTCCTTTGTCACAGATTACCCAGATGGATTAAAGTCACTGATTTCTTTTGCGATTTC
AACGGGTACTGATGGGCTGACAGTATTCTGTCGAATGACTTTAGGAAAAGAAATTCTTTG
AAATGGGAATTCCTT
■■Homology search results ■■ -
sp_hit_id P52860
Definition sp|P52860|RL3_THETH 50S ribosomal protein L3 OS=Thermus thermophilus
Align length 25
Score (bit) 30.0
E-value 3.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920234|Adiantum capillus-veneris mRNA, clone:
YMU001_000134_F03.
         (195 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P52860|RL3_THETH 50S ribosomal protein L3 OS=Thermus thermoph...    30   3.8  
sp|Q5SHN8|RL3_THET8 50S ribosomal protein L3 OS=Thermus thermoph...    30   3.8  
sp|Q72I04|RL3_THET2 50S ribosomal protein L3 OS=Thermus thermoph...    30   3.8  
sp|Q48TV1|GLMM_STRPM Phosphoglucosamine mutase OS=Streptococcus ...    30   3.8  
sp|A2REP8|GLMM_STRPG Phosphoglucosamine mutase OS=Streptococcus ...    30   3.8  
sp|Q1J6W8|GLMM_STRPF Phosphoglucosamine mutase OS=Streptococcus ...    30   3.8  
sp|Q1JH49|GLMM_STRPD Phosphoglucosamine mutase OS=Streptococcus ...    30   3.8  
sp|Q1JM03|GLMM_STRPC Phosphoglucosamine mutase OS=Streptococcus ...    30   3.8  
sp|Q1JC19|GLMM_STRPB Phosphoglucosamine mutase OS=Streptococcus ...    30   3.8  
sp|Q8P179|GLMM_STRP8 Phosphoglucosamine mutase OS=Streptococcus ...    30   3.8  
sp|Q5XCE0|GLMM_STRP6 Phosphoglucosamine mutase OS=Streptococcus ...    30   3.8  
sp|Q8K7R7|GLMM_STRP3 Phosphoglucosamine mutase OS=Streptococcus ...    30   3.8  
sp|Q99ZW8|GLMM_STRP1 Phosphoglucosamine mutase OS=Streptococcus ...    30   3.8  
sp|Q88J06|URE3_PSEPK Urease subunit gamma OS=Pseudomonas putida ...    30   5.0  
sp|B0KUZ9|URE3_PSEPG Urease subunit gamma OS=Pseudomonas putida ...    30   5.0  
sp|A5W4B8|URE3_PSEP1 Urease subunit gamma OS=Pseudomonas putida ...    30   5.0  
sp|Q8CNX4|IDH_STAES Isocitrate dehydrogenase [NADP] OS=Staphyloc...    30   5.0  
sp|Q5HNL1|IDH_STAEQ Isocitrate dehydrogenase [NADP] OS=Staphyloc...    30   5.0  
sp|Q1IBP2|URE3_PSEE4 Urease subunit gamma OS=Pseudomonas entomop...    29   6.5  
sp|A4VWE5|GLMM_STRSY Phosphoglucosamine mutase OS=Streptococcus ...    29   6.5  
sp|A4W2Q0|GLMM_STRS2 Phosphoglucosamine mutase OS=Streptococcus ...    29   6.5  
sp|Q8DTC6|GLMM_STRMU Phosphoglucosamine mutase OS=Streptococcus ...    29   6.5  
sp|Q8NW61|IDH_STAAW Isocitrate dehydrogenase [NADP] OS=Staphyloc...    29   8.5  
sp|Q6G8N2|IDH_STAAS Isocitrate dehydrogenase [NADP] OS=Staphyloc...    29   8.5  
sp|Q6GG12|IDH_STAAR Isocitrate dehydrogenase [NADP] OS=Staphyloc...    29   8.5  
sp|P99167|IDH_STAAN Isocitrate dehydrogenase [NADP] OS=Staphyloc...    29   8.5  
sp|P65099|IDH_STAAM Isocitrate dehydrogenase [NADP] OS=Staphyloc...    29   8.5  
sp|Q5HF79|IDH_STAAC Isocitrate dehydrogenase [NADP] OS=Staphyloc...    29   8.5  

>sp|P52860|RL3_THETH 50S ribosomal protein L3 OS=Thermus
           thermophilus GN=rplC PE=3 SV=1
          Length = 206

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -1

Query: 126 PVEIAKEISDFNPSG*SVTKERSNP 52
           PV I +EI DFNP G +VT E   P
Sbjct: 74  PVRILREIRDFNPEGDTVTVEIFKP 98


>sp|Q5SHN8|RL3_THET8 50S ribosomal protein L3 OS=Thermus
           thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=rplC
           PE=1 SV=1
          Length = 206

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -1

Query: 126 PVEIAKEISDFNPSG*SVTKERSNP 52
           PV I +EI DFNP G +VT E   P
Sbjct: 74  PVRILREIRDFNPEGDTVTVEIFKP 98


>sp|Q72I04|RL3_THET2 50S ribosomal protein L3 OS=Thermus
           thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
           GN=rplC PE=1 SV=1
          Length = 206

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -1

Query: 126 PVEIAKEISDFNPSG*SVTKERSNP 52
           PV I +EI DFNP G +VT E   P
Sbjct: 74  PVRILREIRDFNPEGDTVTVEIFKP 98


>sp|Q48TV1|GLMM_STRPM Phosphoglucosamine mutase OS=Streptococcus
           pyogenes serotype M28 GN=glmM PE=3 SV=1
          Length = 451

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
 Frame = +2

Query: 71  VTDYPDGLKSLISFAISTGTD--GLTV 145
           + DYP+GL+    F ++TGTD  G+TV
Sbjct: 150 LVDYPEGLRKYEKFLVTTGTDLSGMTV 176


>sp|A2REP8|GLMM_STRPG Phosphoglucosamine mutase OS=Streptococcus
           pyogenes serotype M5 (strain Manfredo) GN=glmM PE=3 SV=1
          Length = 451

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
 Frame = +2

Query: 71  VTDYPDGLKSLISFAISTGTD--GLTV 145
           + DYP+GL+    F ++TGTD  G+TV
Sbjct: 150 LVDYPEGLRKYEKFLVTTGTDLSGMTV 176


>sp|Q1J6W8|GLMM_STRPF Phosphoglucosamine mutase OS=Streptococcus
           pyogenes serotype M4 (strain MGAS10750) GN=glmM PE=3
           SV=1
          Length = 451

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
 Frame = +2

Query: 71  VTDYPDGLKSLISFAISTGTD--GLTV 145
           + DYP+GL+    F ++TGTD  G+TV
Sbjct: 150 LVDYPEGLRKYEKFLVTTGTDLSGMTV 176


>sp|Q1JH49|GLMM_STRPD Phosphoglucosamine mutase OS=Streptococcus
           pyogenes serotype M2 (strain MGAS10270) GN=glmM PE=3
           SV=1
          Length = 451

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
 Frame = +2

Query: 71  VTDYPDGLKSLISFAISTGTD--GLTV 145
           + DYP+GL+    F ++TGTD  G+TV
Sbjct: 150 LVDYPEGLRKYEKFLVTTGTDLSGMTV 176


>sp|Q1JM03|GLMM_STRPC Phosphoglucosamine mutase OS=Streptococcus
           pyogenes serotype M12 (strain MGAS9429) GN=glmM PE=3
           SV=1
          Length = 451

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
 Frame = +2

Query: 71  VTDYPDGLKSLISFAISTGTD--GLTV 145
           + DYP+GL+    F ++TGTD  G+TV
Sbjct: 150 LVDYPEGLRKYEKFLVTTGTDLSGMTV 176


>sp|Q1JC19|GLMM_STRPB Phosphoglucosamine mutase OS=Streptococcus
           pyogenes serotype M12 (strain MGAS2096) GN=glmM PE=3
           SV=1
          Length = 451

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
 Frame = +2

Query: 71  VTDYPDGLKSLISFAISTGTD--GLTV 145
           + DYP+GL+    F ++TGTD  G+TV
Sbjct: 150 LVDYPEGLRKYEKFLVTTGTDLSGMTV 176


>sp|Q8P179|GLMM_STRP8 Phosphoglucosamine mutase OS=Streptococcus
           pyogenes serotype M18 GN=glmM PE=3 SV=1
          Length = 451

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
 Frame = +2

Query: 71  VTDYPDGLKSLISFAISTGTD--GLTV 145
           + DYP+GL+    F ++TGTD  G+TV
Sbjct: 150 LVDYPEGLRKYEKFLVTTGTDLSGMTV 176
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920234|Adiantum capillus-veneris mRNA, clone:
YMU001_000134_F03.
         (195 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******