BP920238
Clone id YMU001_000134_F07
Library
Length 503
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000134_F07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
TTTTTTTTTTTTTTTTTTCACACAGCCAATTCTTCATTAAGCACATCACCATCTTCTGCT
AAGACCTGCAATAGAGGTCTGCAGTGCACCACAGATTCCTTGCCATCTAAATGATGGCAA
CAAGATAAGAGTCAGACCCATCAAATTTGGCCAAATAACTATCAACAACTTCACTGGGGA
AGATACAATAGGCCAGCACCTCATTTCTCCCGCACAAACAAAGCCTCCAAGGTCAGCAAA
ACCAGACACCTGCTTTATGAATTAGAGTTCAAATCTTATCCCTGATAGAGAACTTAGCTT
CCACCTAGGGTACCTAATCGTTAGCCACTAAAGTCAGCAGAGGTATTCCACCTGCCTTGC
ACGCTCTGCAAACATCTATGTACATCAGGTCGCGTATTGCAAATAAGCATCAATGAATAA
TTCTAAAGCCATAGATGGTCACCAAAACTGAGTGAGGGCATATTTACAGGAGTTTCTCAG
GACACACACCCTACAACAATAAA
■■Homology search results ■■ -
sp_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920238|Adiantum capillus-veneris mRNA, clone:
YMU001_000134_F07.
(485 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done

***** No hits found ******


tr_hit_id Q1M459
Definition tr|Q1M459|Q1M459_RHIL3 Putative substrate-binding component of ABC transporter OS=Rhizobium leguminosarum bv. viciae (strain 3841)
Align length 61
Score (bit) 33.5
E-value 5.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920238|Adiantum capillus-veneris mRNA, clone:
YMU001_000134_F07.
(485 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q1M459|Q1M459_RHIL3 Putative substrate-binding component of A... 33 5.3
tr|Q8VM86|Q8VM86_RHILV Solute binding protein (Fragment) OS=Rhiz... 33 5.3
tr|B4LXW9|B4LXW9_DROVI GJ23408 OS=Drosophila virilis GN=GJ23408 ... 33 9.1

>tr|Q1M459|Q1M459_RHIL3 Putative substrate-binding component of ABC
transporter OS=Rhizobium leguminosarum bv. viciae
(strain 3841) GN=pRL120404 PE=3 SV=1
Length = 397

Score = 33.5 bits (75), Expect = 5.3
Identities = 20/61 (32%), Positives = 31/61 (50%)
Frame = +1

Query: 76 DSLPSK*WQQDKSQTHQIWPNNYQQLHWGRYNRPAPHFSRTNKASKVSKTRHLLYELEFK 255
DS SK + + + T+ PNN+ +HW N A + A KV K R L ++++K
Sbjct: 296 DSPESKAFVEKFTATYNEAPNNHAYVHWDTVNLLAAAIKQAGSADKV-KVRDALSKIKYK 354

Query: 256 S 258
S
Sbjct: 355 S 355


>tr|Q8VM86|Q8VM86_RHILV Solute binding protein (Fragment)
OS=Rhizobium leguminosarum bv. viciae GN=bra2C PE=4 SV=1
Length = 264

Score = 33.5 bits (75), Expect = 5.3
Identities = 20/61 (32%), Positives = 31/61 (50%)
Frame = +1

Query: 76 DSLPSK*WQQDKSQTHQIWPNNYQQLHWGRYNRPAPHFSRTNKASKVSKTRHLLYELEFK 255
DS SK + + + T+ PNN+ +HW N A + A KV K R L ++++K
Sbjct: 163 DSPESKAFVEKFTATYNEAPNNHAYVHWDTVNLLAAAIKQAGSADKV-KVRDALSKIKYK 221

Query: 256 S 258
S
Sbjct: 222 S 222


>tr|B4LXW9|B4LXW9_DROVI GJ23408 OS=Drosophila virilis GN=GJ23408
PE=4 SV=1
Length = 401

Score = 32.7 bits (73), Expect = 9.1
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +1

Query: 97 WQQDKSQTHQIWPNNYQQLHWGRYNRPAPHFSRTNKASKVSKTR--HLLY 240
WQ++K + Q W N QQ W Y +P +S + ++ + R H +Y
Sbjct: 223 WQRNKERVEQNWRKNQQQ--WSSYEQPTSRYSYQQRPRQMLRERPKHQIY 270