BP920239
Clone id YMU001_000134_F08
Library
Length 493
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000134_F08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
CAATTCAAAGAGAAAATGGCACTGGCTGCAATTTGCAGATTAGGAATCAGTACACTGAAT
AGTCTATATGATGAAGGTATGATTTGCATGAGGTCAGTCACTCCATAAAAAGCTGAAAAT
GAGTGACCTTCACAAACTCTCTGAAAATGAATTCCTTTGGTTCCATCCAGACACCTTAAC
CTGCCTTAATCTGGTGCAAGCCAGAAGCCAAGTATGCCCGTCTTTAAACATCCAGGACCT
TACAACAGAGAATGATCTGCAAAGACAGCAAAATTTGGGCCACTAATGGAGACTCCTACA
AATACATGGGTTTATCTCATGCTCTCTGGATGGTTTTCCAATGATGAGCCATGTCTACAC
AGCTCGATATAGTTACCAACTGACTGTACTTTGGATTGAGAAACTATCACATACTCAAAA
TATGCACAGGTGACTGAACTTACATAGATCCCACTGAACTGGAACCAAGATGGCCGNCAC
CTCCATCAATGAG
■■Homology search results ■■ -
sp_hit_id O25627
Definition sp|O25627|BIOA_HELPY Adenosylmethionine-8-amino-7-oxononanoate aminotransferase OS=Helicobacter pylori
Align length 120
Score (bit) 33.9
E-value 0.42
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920239|Adiantum capillus-veneris mRNA, clone:
YMU001_000134_F08.
(493 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|O25627|BIOA_HELPY Adenosylmethionine-8-amino-7-oxononanoate a... 34 0.42
sp|Q53Q11|P2C74_ORYSJ Probable protein phosphatase 2C 74 OS=Oryz... 31 2.7
sp|Q5HWE6|EX7L_CAMJR Exodeoxyribonuclease 7 large subunit OS=Cam... 31 2.7
sp|A1VY44|EX7L_CAMJJ Exodeoxyribonuclease 7 large subunit OS=Cam... 31 2.7
sp|Q6MSR0|SYL_MYCMS Leucyl-tRNA synthetase OS=Mycoplasma mycoide... 30 5.9
sp|B0URU7|TRUD_HAES2 tRNA pseudouridine synthase D OS=Haemophilu... 30 7.9
sp|Q0I5H8|TRUD_HAES1 tRNA pseudouridine synthase D OS=Haemophilu... 30 7.9
sp|Q96WV5|COPA_SCHPO Putative coatomer subunit alpha OS=Schizosa... 30 7.9

>sp|O25627|BIOA_HELPY Adenosylmethionine-8-amino-7-oxononanoate
aminotransferase OS=Helicobacter pylori GN=bioA PE=3
SV=1
Length = 436

Score = 33.9 bits (76), Expect = 0.42
Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 10/120 (8%)
Frame = +2

Query: 83 FA*GQSLHKKLKMSDLHKLSENEFLWFHPDTLTCLNL--VQARSQVCPSLNIQDLTT--- 247
F Q+ KKL +S LS + +H +TL L++ V+ L +++LTT
Sbjct: 130 FLKNQTRRKKLFLS----LSNS----YHGETLGALSVGDVKLYKDTYTPLLLKNLTTPVP 181

Query: 248 ENDLQRQQNLGH*WRLLQIHGFISCSLDGFPMMS-----HVYTARYSYQLTVLWIEKLSH 412
+ND + + +L RLL H C+ P++ H+Y+ARY Q +L +K H
Sbjct: 182 KNDHEIENSLNALKRLLDKHSEEICAFIAEPLLQCAGNMHIYSARYLKQAVLLCKQKNIH 241


>sp|Q53Q11|P2C74_ORYSJ Probable protein phosphatase 2C 74 OS=Oryza
sativa subsp. japonica GN=Os11g0242200 PE=2 SV=1
Length = 397

Score = 31.2 bits (69), Expect = 2.7
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -3

Query: 209 GFWLAPD*GRLRCLDGTKGIHFQRVCEGHSFSAFYGVTD 93
GFW+A G ++ G+ ++ EGHS AFYGV D
Sbjct: 133 GFWVASRRGLRHAMEDGYGVITHKI-EGHSQMAFYGVYD 170


>sp|Q5HWE6|EX7L_CAMJR Exodeoxyribonuclease 7 large subunit
OS=Campylobacter jejuni (strain RM1221) GN=xseA PE=3
SV=1
Length = 387

Score = 31.2 bits (69), Expect = 2.7
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = -3

Query: 440 SSVTCAYFEYVIVSQSKVQSVGNYIELCRHGSSLENHPESMR*THVFVGVSISGPNF 270
SS+ CA F+ + +VGN++ELC S+ +PES R + F+ S+ F
Sbjct: 47 SSIACAMFKGANLKVGFKPAVGNFLELC---GSVSLYPESGR--YQFIATSMKKAGF 98


>sp|A1VY44|EX7L_CAMJJ Exodeoxyribonuclease 7 large subunit
OS=Campylobacter jejuni subsp. jejuni serotype O:23/36
(strain 81-176) GN=xseA PE=3 SV=1
Length = 387

Score = 31.2 bits (69), Expect = 2.7
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = -3

Query: 440 SSVTCAYFEYVIVSQSKVQSVGNYIELCRHGSSLENHPESMR*THVFVGVSISGPNF 270
SS+ CA F+ + +VGN++ELC S+ +PES R + F+ S+ F
Sbjct: 47 SSIACAMFKGANLKVGFKPAVGNFLELC---GSVSLYPESGR--YQFIATSMKKAGF 98


>sp|Q6MSR0|SYL_MYCMS Leucyl-tRNA synthetase OS=Mycoplasma mycoides
subsp. mycoides SC GN=leuS PE=3 SV=2
Length = 804

Score = 30.0 bits (66), Expect = 5.9
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -3

Query: 407 IVSQSKVQSVGNYIELCRHGSSLENHPESMR*THVFVGVSISGP 276
+ + K++ V YIEL + S +E ES T VF+G + P
Sbjct: 270 LTAPEKLEEVKKYIELTANKSEIERKDESRTKTGVFIGSYATNP 313


>sp|B0URU7|TRUD_HAES2 tRNA pseudouridine synthase D OS=Haemophilus
somnus (strain 2336) GN=truD PE=3 SV=1
Length = 335

Score = 29.6 bits (65), Expect = 7.9
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2

Query: 95 QSLHKKLKMSDLHKLSENEFLWFHPDTLTCLNLVQAR 205
Q LH K+ ++D+ +LS + WFH D NL+Q R
Sbjct: 210 QGLHHKILVNDILQLSGSHS-WFHADQKEDFNLLQQR 245


>sp|Q0I5H8|TRUD_HAES1 tRNA pseudouridine synthase D OS=Haemophilus
somnus (strain 129Pt) GN=truD PE=3 SV=1
Length = 335

Score = 29.6 bits (65), Expect = 7.9
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2

Query: 95 QSLHKKLKMSDLHKLSENEFLWFHPDTLTCLNLVQAR 205
Q LH K+ ++D+ +LS + WFH D NL+Q R
Sbjct: 210 QGLHHKILVNDILQLSGSHS-WFHADQKEDFNLLQQR 245


>sp|Q96WV5|COPA_SCHPO Putative coatomer subunit alpha
OS=Schizosaccharomyces pombe GN=SPBPJ4664.04 PE=1 SV=1
Length = 1207

Score = 29.6 bits (65), Expect = 7.9
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = -2

Query: 264 LCRSFSVVRSWMFKDGHTWLLACTRLRQVKVSGWNQRN 151
LC VR F + W+L+C+ + +++ W RN
Sbjct: 91 LCGHMDYVRVCTFHHEYPWILSCSDDQTIRIWNWQSRN 128


tr_hit_id B6K0N2
Definition tr|B6K0N2|B6K0N2_SCHJP Glucosidase OS=Schizosaccharomyces japonicus yFS275
Align length 78
Score (bit) 33.1
E-value 7.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920239|Adiantum capillus-veneris mRNA, clone:
YMU001_000134_F08.
(493 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B6K0N2|B6K0N2_SCHJP Glucosidase OS=Schizosaccharomyces japoni... 33 7.3

>tr|B6K0N2|B6K0N2_SCHJP Glucosidase OS=Schizosaccharomyces japonicus
yFS275 GN=SJAG_02590 PE=4 SV=1
Length = 628

Score = 33.1 bits (74), Expect = 7.3
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Frame = +2

Query: 125 DLHKLSENEFLWFHPDTLTCLNLVQARSQVCPSLNIQ-DLTTENDLQRQQNLGH*WRLLQ 301
D+H + N++ W+ PD +T N SL ++ D+ E+DL + + W L
Sbjct: 265 DIHYAATNDYEWYDPDAVTTAN---------GSLRLRMDMFAEHDLNLRSGMLQSWNKLC 315

Query: 302 IHG---FISCSLDGFPMM 346
G +S SL G P M
Sbjct: 316 FKGGVFEVSASLGGKPEM 333