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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920239
Clone id YMU001_000134_F08
Library
Length 493
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000134_F08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CAATTCAAAGAGAAAATGGCACTGGCTGCAATTTGCAGATTAGGAATCAGTACACTGAAT
AGTCTATATGATGAAGGTATGATTTGCATGAGGTCAGTCACTCCATAAAAAGCTGAAAAT
GAGTGACCTTCACAAACTCTCTGAAAATGAATTCCTTTGGTTCCATCCAGACACCTTAAC
CTGCCTTAATCTGGTGCAAGCCAGAAGCCAAGTATGCCCGTCTTTAAACATCCAGGACCT
TACAACAGAGAATGATCTGCAAAGACAGCAAAATTTGGGCCACTAATGGAGACTCCTACA
AATACATGGGTTTATCTCATGCTCTCTGGATGGTTTTCCAATGATGAGCCATGTCTACAC
AGCTCGATATAGTTACCAACTGACTGTACTTTGGATTGAGAAACTATCACATACTCAAAA
TATGCACAGGTGACTGAACTTACATAGATCCCACTGAACTGGAACCAAGATGGCCGNCAC
CTCCATCAATGAG
■■Homology search results ■■ -
sp_hit_id O25627
Definition sp|O25627|BIOA_HELPY Adenosylmethionine-8-amino-7-oxononanoate aminotransferase OS=Helicobacter pylori
Align length 120
Score (bit) 33.9
E-value 0.42
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920239|Adiantum capillus-veneris mRNA, clone:
YMU001_000134_F08.
         (493 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O25627|BIOA_HELPY Adenosylmethionine-8-amino-7-oxononanoate a...    34   0.42 
sp|Q53Q11|P2C74_ORYSJ Probable protein phosphatase 2C 74 OS=Oryz...    31   2.7  
sp|Q5HWE6|EX7L_CAMJR Exodeoxyribonuclease 7 large subunit OS=Cam...    31   2.7  
sp|A1VY44|EX7L_CAMJJ Exodeoxyribonuclease 7 large subunit OS=Cam...    31   2.7  
sp|Q6MSR0|SYL_MYCMS Leucyl-tRNA synthetase OS=Mycoplasma mycoide...    30   5.9  
sp|B0URU7|TRUD_HAES2 tRNA pseudouridine synthase D OS=Haemophilu...    30   7.9  
sp|Q0I5H8|TRUD_HAES1 tRNA pseudouridine synthase D OS=Haemophilu...    30   7.9  
sp|Q96WV5|COPA_SCHPO Putative coatomer subunit alpha OS=Schizosa...    30   7.9  

>sp|O25627|BIOA_HELPY Adenosylmethionine-8-amino-7-oxononanoate
           aminotransferase OS=Helicobacter pylori GN=bioA PE=3
           SV=1
          Length = 436

 Score = 33.9 bits (76), Expect = 0.42
 Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 10/120 (8%)
 Frame = +2

Query: 83  FA*GQSLHKKLKMSDLHKLSENEFLWFHPDTLTCLNL--VQARSQVCPSLNIQDLTT--- 247
           F   Q+  KKL +S    LS +    +H +TL  L++  V+        L +++LTT   
Sbjct: 130 FLKNQTRRKKLFLS----LSNS----YHGETLGALSVGDVKLYKDTYTPLLLKNLTTPVP 181

Query: 248 ENDLQRQQNLGH*WRLLQIHGFISCSLDGFPMMS-----HVYTARYSYQLTVLWIEKLSH 412
           +ND + + +L    RLL  H    C+    P++      H+Y+ARY  Q  +L  +K  H
Sbjct: 182 KNDHEIENSLNALKRLLDKHSEEICAFIAEPLLQCAGNMHIYSARYLKQAVLLCKQKNIH 241


>sp|Q53Q11|P2C74_ORYSJ Probable protein phosphatase 2C 74 OS=Oryza
           sativa subsp. japonica GN=Os11g0242200 PE=2 SV=1
          Length = 397

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = -3

Query: 209 GFWLAPD*GRLRCLDGTKGIHFQRVCEGHSFSAFYGVTD 93
           GFW+A   G    ++   G+   ++ EGHS  AFYGV D
Sbjct: 133 GFWVASRRGLRHAMEDGYGVITHKI-EGHSQMAFYGVYD 170


>sp|Q5HWE6|EX7L_CAMJR Exodeoxyribonuclease 7 large subunit
           OS=Campylobacter jejuni (strain RM1221) GN=xseA PE=3
           SV=1
          Length = 387

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 19/57 (33%), Positives = 30/57 (52%)
 Frame = -3

Query: 440 SSVTCAYFEYVIVSQSKVQSVGNYIELCRHGSSLENHPESMR*THVFVGVSISGPNF 270
           SS+ CA F+   +      +VGN++ELC    S+  +PES R  + F+  S+    F
Sbjct: 47  SSIACAMFKGANLKVGFKPAVGNFLELC---GSVSLYPESGR--YQFIATSMKKAGF 98


>sp|A1VY44|EX7L_CAMJJ Exodeoxyribonuclease 7 large subunit
           OS=Campylobacter jejuni subsp. jejuni serotype O:23/36
           (strain 81-176) GN=xseA PE=3 SV=1
          Length = 387

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 19/57 (33%), Positives = 30/57 (52%)
 Frame = -3

Query: 440 SSVTCAYFEYVIVSQSKVQSVGNYIELCRHGSSLENHPESMR*THVFVGVSISGPNF 270
           SS+ CA F+   +      +VGN++ELC    S+  +PES R  + F+  S+    F
Sbjct: 47  SSIACAMFKGANLKVGFKPAVGNFLELC---GSVSLYPESGR--YQFIATSMKKAGF 98


>sp|Q6MSR0|SYL_MYCMS Leucyl-tRNA synthetase OS=Mycoplasma mycoides
           subsp. mycoides SC GN=leuS PE=3 SV=2
          Length = 804

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -3

Query: 407 IVSQSKVQSVGNYIELCRHGSSLENHPESMR*THVFVGVSISGP 276
           + +  K++ V  YIEL  + S +E   ES   T VF+G   + P
Sbjct: 270 LTAPEKLEEVKKYIELTANKSEIERKDESRTKTGVFIGSYATNP 313


>sp|B0URU7|TRUD_HAES2 tRNA pseudouridine synthase D OS=Haemophilus
           somnus (strain 2336) GN=truD PE=3 SV=1
          Length = 335

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +2

Query: 95  QSLHKKLKMSDLHKLSENEFLWFHPDTLTCLNLVQAR 205
           Q LH K+ ++D+ +LS +   WFH D     NL+Q R
Sbjct: 210 QGLHHKILVNDILQLSGSHS-WFHADQKEDFNLLQQR 245


>sp|Q0I5H8|TRUD_HAES1 tRNA pseudouridine synthase D OS=Haemophilus
           somnus (strain 129Pt) GN=truD PE=3 SV=1
          Length = 335

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +2

Query: 95  QSLHKKLKMSDLHKLSENEFLWFHPDTLTCLNLVQAR 205
           Q LH K+ ++D+ +LS +   WFH D     NL+Q R
Sbjct: 210 QGLHHKILVNDILQLSGSHS-WFHADQKEDFNLLQQR 245


>sp|Q96WV5|COPA_SCHPO Putative coatomer subunit alpha
           OS=Schizosaccharomyces pombe GN=SPBPJ4664.04 PE=1 SV=1
          Length = 1207

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -2

Query: 264 LCRSFSVVRSWMFKDGHTWLLACTRLRQVKVSGWNQRN 151
           LC     VR   F   + W+L+C+  + +++  W  RN
Sbjct: 91  LCGHMDYVRVCTFHHEYPWILSCSDDQTIRIWNWQSRN 128
tr_hit_id B6K0N2
Definition tr|B6K0N2|B6K0N2_SCHJP Glucosidase OS=Schizosaccharomyces japonicus yFS275
Align length 78
Score (bit) 33.1
E-value 7.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920239|Adiantum capillus-veneris mRNA, clone:
YMU001_000134_F08.
         (493 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6K0N2|B6K0N2_SCHJP Glucosidase OS=Schizosaccharomyces japoni...    33   7.3  

>tr|B6K0N2|B6K0N2_SCHJP Glucosidase OS=Schizosaccharomyces japonicus
           yFS275 GN=SJAG_02590 PE=4 SV=1
          Length = 628

 Score = 33.1 bits (74), Expect = 7.3
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
 Frame = +2

Query: 125 DLHKLSENEFLWFHPDTLTCLNLVQARSQVCPSLNIQ-DLTTENDLQRQQNLGH*WRLLQ 301
           D+H  + N++ W+ PD +T  N          SL ++ D+  E+DL  +  +   W  L 
Sbjct: 265 DIHYAATNDYEWYDPDAVTTAN---------GSLRLRMDMFAEHDLNLRSGMLQSWNKLC 315

Query: 302 IHG---FISCSLDGFPMM 346
             G    +S SL G P M
Sbjct: 316 FKGGVFEVSASLGGKPEM 333