BP920246
Clone id YMU001_000134_G04
Library
Length 465
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000134_G04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
GGGCTAACCATTGGACACAAGAAAAGCCCAAATCCACCTTTACACAAAACTAGCAAGTCC
ATGAAAAGCCTCTTAATTGCATGGTAAGACTAATGGTACACATCAACATGACACTGTAAA
TCCCTACTCTCCATATACTTCATATATCTGTGAAGAAAAAACTGAGTAGAAGCAATTTAA
TGCTTAGCAGAAGACAGCATTTCTATGAGTACACAGTAACTTGGGTACAATTTGTCAGTG
TGCAAGCAAGCCTGCAGATGGGCCCATGGTTGGTCTGGGTGGTAACGACCAACAATAATG
AAAGCAAATTGCTGCCTTATTATAGGAGCACTTGAGAATTCCCATTTCCTGCATGTACCT
ACAACTTTAAGGTGCTCTCACTTATCACATGTTTGAAGGAATTGCCATTGAATGTCAGAC
ATAGAAACCCATGACATCCTGTAGCGCCTCCATCCTATCATCTGA
■■Homology search results ■■ -
sp_hit_id Q913D4
Definition sp|Q913D4|POLG_HCVIN Genome polyprotein OS=Hepatitis C virus genotype 1c (isolate India)
Align length 31
Score (bit) 30.4
E-value 3.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920246|Adiantum capillus-veneris mRNA, clone:
YMU001_000134_G04.
(465 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q913D4|POLG_HCVIN Genome polyprotein OS=Hepatitis C virus gen... 30 3.9
sp|P26661|POLG_HCVJ8 Genome polyprotein OS=Hepatitis C virus gen... 29 8.7

>sp|Q913D4|POLG_HCVIN Genome polyprotein OS=Hepatitis C virus genotype
1c (isolate India) PE=3 SV=3
Length = 3011

Score = 30.4 bits (67), Expect = 3.9
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -2

Query: 104 DVYH*SYHAIKRLFMDLLVLCKGGFGLFLCP 12
D+YH HA RLF+ L+L G G++L P
Sbjct: 2979 DIYHSVSHARPRLFLWCLLLLSVGVGIYLLP 3009


>sp|P26661|POLG_HCVJ8 Genome polyprotein OS=Hepatitis C virus genotype
2b (isolate HC-J8) PE=1 SV=3
Length = 3033

Score = 29.3 bits (64), Expect = 8.7
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -2

Query: 104 DVYH*SYHAIKRLFMDLLVLCKGGFGLFLCP 12
D+YH HA RL + L+L G G+FL P
Sbjct: 3001 DIYHSVSHARPRLLLLCLLLLSVGVGIFLLP 3031


tr_hit_id A0K0C9
Definition tr|A0K0C9|A0K0C9_ARTS2 DNA-directed DNA polymerase OS=Arthrobacter sp. (strain FB24)
Align length 53
Score (bit) 33.5
E-value 5.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920246|Adiantum capillus-veneris mRNA, clone:
YMU001_000134_G04.
(465 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A0K0C9|A0K0C9_ARTS2 DNA-directed DNA polymerase OS=Arthrobact... 33 5.4

>tr|A0K0C9|A0K0C9_ARTS2 DNA-directed DNA polymerase OS=Arthrobacter
sp. (strain FB24) GN=Arth_3374 PE=3 SV=1
Length = 568

Score = 33.5 bits (75), Expect = 5.4
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = -2

Query: 362 VGTCRKWEF--SSAPIIRQQFAFIIVGRYHPDQPWAHLQACLHTDKLYPSYCV 210
V T R+WE SS P I A+ + R H WA L A ++ + P Y V
Sbjct: 253 VKTTRQWELKESSHPAIEPLLAYKKLARLHAANGWAWLDAWVNNGRFQPEYVV 305