BP920250 |
Clone id |
YMU001_000134_G08 |
Library |
YMU01 |
Length |
406 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000134_G08. |
Accession |
BP920250 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL558Contig1 |
Sequence |
ACATCACCAGCCATGTCAGAGTCACAAAAGTCCCTTCAACTCCATTGGTCCTTTACCATA GCAGAGGCATTTGTTTTTAGTCCCTTTCAAGTACCTCATAATGGACTTCACTACATCCCA ATGCAACCTGCCTAGATTTTCCATGAATCGGCTCACAACTCCCACTGCATGGGCTATGTC AGGCCTAGTAGCAACCATAGCATAAATAAGTGAACCACAAGCTGAAGCATAAGGCACACT TTGCATGTCATTGGCTTCTTCCTTTGACTTGGGACAATCATCCTTGGAGATCTTGACATA TGGCTGTAATGGCACACCAAGAGGCTTTTGCTTCAGCTATGTTAAATCTGTCCAACACCT TTTCAATTGTACTTTTCTTGCGACAAATACAATAGGCACTTGTCTC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P10978 |
Definition |
sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum |
Align length |
99 |
Score (bit) |
125.0 |
E-value |
6.0e-29 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q5MG99 |
Definition |
tr|Q5MG99|Q5MG99_IPOBA Hypothetical retrotransposon OS=Ipomoea batatas |
Align length |
99 |
Score (bit) |
125.0 |
E-value |
2.0e-28 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP920250|Adiantum capillus-veneris mRNA, clone: YMU001_000134_G08. (406 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q5MG99|Q5MG99_IPOBA Hypothetical retrotransposon OS=Ipomoea b... 125 2e-28 tr|A5AMT8|A5AMT8_VITVI Putative uncharacterized protein OS=Vitis... 125 4e-28 tr|A5BYJ3|A5BYJ3_VITVI Putative uncharacterized protein OS=Vitis... 124 1e-27 tr|A5BJQ3|A5BJQ3_VITVI Putative uncharacterized protein OS=Vitis... 123 1e-27 tr|A5ADX1|A5ADX1_VITVI Putative uncharacterized protein OS=Vitis... 123 1e-27 tr|A5BPU0|A5BPU0_VITVI Putative uncharacterized protein OS=Vitis... 123 1e-27 tr|A5C9A6|A5C9A6_VITVI Putative uncharacterized protein OS=Vitis... 123 2e-27 tr|A5B1S3|A5B1S3_VITVI Putative uncharacterized protein OS=Vitis... 123 2e-27 tr|A5BK92|A5BK92_VITVI Putative uncharacterized protein OS=Vitis... 123 2e-27 tr|A5BC72|A5BC72_VITVI Putative uncharacterized protein OS=Vitis... 123 2e-27 tr|A5B0C8|A5B0C8_VITVI Putative uncharacterized protein OS=Vitis... 123 2e-27 tr|A5AZL1|A5AZL1_VITVI Putative uncharacterized protein OS=Vitis... 123 2e-27 tr|A5AVU6|A5AVU6_VITVI Putative uncharacterized protein OS=Vitis... 122 2e-27 tr|A5ARK1|A5ARK1_VITVI Putative uncharacterized protein OS=Vitis... 122 2e-27 tr|A5BPB3|A5BPB3_VITVI Putative uncharacterized protein OS=Vitis... 122 3e-27 tr|A5AFD8|A5AFD8_VITVI Putative uncharacterized protein OS=Vitis... 122 4e-27 tr|A5BA89|A5BA89_VITVI Putative uncharacterized protein OS=Vitis... 121 5e-27 tr|A5BGX3|A5BGX3_VITVI Putative uncharacterized protein OS=Vitis... 121 5e-27 tr|A5BIC7|A5BIC7_VITVI Putative uncharacterized protein OS=Vitis... 121 7e-27 tr|A5B6M5|A5B6M5_VITVI Putative uncharacterized protein OS=Vitis... 120 9e-27 tr|A5BHI5|A5BHI5_VITVI Putative uncharacterized protein OS=Vitis... 120 2e-26 tr|A5B541|A5B541_VITVI Putative uncharacterized protein OS=Vitis... 119 2e-26 tr|A5AER2|A5AER2_VITVI Putative uncharacterized protein OS=Vitis... 119 2e-26 tr|A5CA02|A5CA02_VITVI Putative uncharacterized protein OS=Vitis... 120 2e-26 tr|A5BFU1|A5BFU1_VITVI Putative uncharacterized protein OS=Vitis... 119 3e-26 tr|A5AS37|A5AS37_VITVI Putative uncharacterized protein OS=Vitis... 118 4e-26 tr|A5C844|A5C844_VITVI Putative uncharacterized protein OS=Vitis... 118 4e-26 tr|A5B5N4|A5B5N4_VITVI Putative uncharacterized protein OS=Vitis... 119 4e-26 tr|A5BD56|A5BD56_VITVI Putative uncharacterized protein OS=Vitis... 119 4e-26 tr|A5BJ32|A5BJ32_VITVI Putative uncharacterized protein OS=Vitis... 118 4e-26
>tr|Q5MG99|Q5MG99_IPOBA Hypothetical retrotransposon OS=Ipomoea batatas PE=4 SV=1 Length = 1415
Score = 125 bits (314), Expect(2) = 2e-28 Identities = 59/99 (59%), Positives = 72/99 (72%) Frame = -2
Query: 327 KPLGVPLQPYVKISKDDCPKSKEEANDMQSVPYASACGSLIYAMVATRPDIAHAVGVVSR 148 KP+ PL + K+ K CP S++E +MQ VPY+SA GSL+YAMV TRPDIAHAVGVVSR Sbjct: 1077 KPVSTPLDMHFKLCKKQCPSSEKEKEEMQRVPYSSAVGSLMYAMVCTRPDIAHAVGVVSR 1136
Query: 147 FMENLGRLHWDVVKSIMRYLKGTKNKCLCYGKGPMELKG 31 F+ N GR HWD VK I+RYL+GT + LC+G G L G Sbjct: 1137 FLSNPGREHWDAVKWILRYLRGTSSLSLCFGTGKPILTG 1175
Score = 23.5 bits (49), Expect(2) = 2e-28 Identities = 10/14 (71%), Positives = 13/14 (92%) Frame = -1
Query: 367 IEKVLDRFNIAEAK 326 IEKVL+RF++ EAK Sbjct: 1064 IEKVLERFHMNEAK 1077
>tr|A5AMT8|A5AMT8_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_005778 PE=4 SV=1 Length = 1024
Score = 125 bits (314), Expect(2) = 4e-28 Identities = 58/99 (58%), Positives = 74/99 (74%) Frame = -2
Query: 327 KPLGVPLQPYVKISKDDCPKSKEEANDMQSVPYASACGSLIYAMVATRPDIAHAVGVVSR 148 KP PL + K+SK+ PK++EE + M VPYASA GSL+YAMV TRPDIAHAVGVVSR Sbjct: 868 KPXSTPLGSHFKLSKEQSPKTEEERDHMSKVPYASAIGSLMYAMVCTRPDIAHAVGVVSR 927
Query: 147 FMENLGRLHWDVVKSIMRYLKGTKNKCLCYGKGPMELKG 31 FM LG+ HW+ VK I+RYLKG+ + CLC+ ++L+G Sbjct: 928 FMSRLGKQHWEAVKWILRYLKGSLDTCLCFXGASLKLQG 966
Score = 22.7 bits (47), Expect(2) = 4e-28 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = -1
Query: 367 IEKVLDRFNIAEAK 326 ++KVL RFN+ EAK Sbjct: 855 VKKVLSRFNMNEAK 868
>tr|A5BYJ3|A5BYJ3_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004379 PE=4 SV=1 Length = 409
Score = 124 bits (310), Expect(2) = 1e-27 Identities = 57/99 (57%), Positives = 74/99 (74%) Frame = -2
Query: 327 KPLGVPLQPYVKISKDDCPKSKEEANDMQSVPYASACGSLIYAMVATRPDIAHAVGVVSR 148 KP+ PL + K+SK+ PK++EE + M VPYASA GSL+YAMV TRPDIAHAVGVVSR Sbjct: 169 KPVSTPLGSHFKLSKEQSPKTEEERDXMSKVPYASAIGSLMYAMVCTRPDIAHAVGVVSR 228
Query: 147 FMENLGRLHWDVVKSIMRYLKGTKNKCLCYGKGPMELKG 31 FM G+ HW+ VK I+RYLKG+ + CLC+ ++L+G Sbjct: 229 FMSRXGKQHWEAVKWILRYLKGSLDTCLCFTGASLKLQG 267
Score = 22.7 bits (47), Expect(2) = 1e-27 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = -1
Query: 367 IEKVLDRFNIAEAK 326 ++KVL RFN+ EAK Sbjct: 156 VKKVLSRFNMNEAK 169
>tr|A5BJQ3|A5BJQ3_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033767 PE=4 SV=1 Length = 1298
Score = 123 bits (309), Expect(2) = 1e-27 Identities = 57/99 (57%), Positives = 74/99 (74%) Frame = -2
Query: 327 KPLGVPLQPYVKISKDDCPKSKEEANDMQSVPYASACGSLIYAMVATRPDIAHAVGVVSR 148 KP+ PL + K+SK+ PK++EE + M VPYASA GSL+YAMV TRPDIAHAVGVVSR Sbjct: 1050 KPVSTPLGSHFKLSKEQSPKTEEERDHMSKVPYASAIGSLMYAMVCTRPDIAHAVGVVSR 1109
Query: 147 FMENLGRLHWDVVKSIMRYLKGTKNKCLCYGKGPMELKG 31 FM G+ HW+ VK I+RYLKG+ + CLC+ ++L+G Sbjct: 1110 FMSRPGKXHWEAVKWILRYLKGSLDTCLCFTGASLKLQG 1148
Score = 22.7 bits (47), Expect(2) = 1e-27 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = -1
Query: 367 IEKVLDRFNIAEAK 326 ++KVL RFN+ EAK Sbjct: 1037 VKKVLSRFNMNEAK 1050
>tr|A5ADX1|A5ADX1_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009113 PE=4 SV=1 Length = 1141
Score = 123 bits (309), Expect(2) = 1e-27 Identities = 58/99 (58%), Positives = 73/99 (73%) Frame = -2
Query: 327 KPLGVPLQPYVKISKDDCPKSKEEANDMQSVPYASACGSLIYAMVATRPDIAHAVGVVSR 148 KP+ PL Y K+SK+ PK+KEE + M VPYASA GSL+YAMV TRPDIAHAVG VSR Sbjct: 985 KPVSTPLGXYFKLSKEQSPKTKEERDHMSKVPYASAIGSLMYAMVCTRPDIAHAVGAVSR 1044
Query: 147 FMENLGRLHWDVVKSIMRYLKGTKNKCLCYGKGPMELKG 31 FM + HW+VVK I+RYLKG+ + CLC+ ++L+G Sbjct: 1045 FMSRPEKQHWEVVKWILRYLKGSLDTCLCFTGASLKLQG 1083
Score = 22.7 bits (47), Expect(2) = 1e-27 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = -1
Query: 367 IEKVLDRFNIAEAK 326 ++KVL RFN+ EAK Sbjct: 972 VKKVLSRFNMNEAK 985
>tr|A5BPU0|A5BPU0_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_039954 PE=4 SV=1 Length = 632
Score = 123 bits (309), Expect(2) = 1e-27 Identities = 57/99 (57%), Positives = 75/99 (75%) Frame = -2
Query: 327 KPLGVPLQPYVKISKDDCPKSKEEANDMQSVPYASACGSLIYAMVATRPDIAHAVGVVSR 148 KP+ PL + K+SK+ PK++EE + M VPYASA GSL+YAMV TRP+IAHAVGVVSR Sbjct: 464 KPVSTPLDSHFKLSKEQSPKTEEEKDHMSKVPYASAIGSLMYAMVCTRPNIAHAVGVVSR 523
Query: 147 FMENLGRLHWDVVKSIMRYLKGTKNKCLCYGKGPMELKG 31 FM G+ HW+VVK I+RYLKG+ + CLC+ ++L+G Sbjct: 524 FMSRPGKQHWEVVKWILRYLKGSLDTCLCFTGASLKLQG 562
Score = 22.7 bits (47), Expect(2) = 1e-27 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = -1
Query: 367 IEKVLDRFNIAEAK 326 ++KVL RFN+ EAK Sbjct: 451 VKKVLSRFNMNEAK 464
>tr|A5C9A6|A5C9A6_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001707 PE=4 SV=1 Length = 1286
Score = 123 bits (308), Expect(2) = 2e-27 Identities = 57/99 (57%), Positives = 75/99 (75%) Frame = -2
Query: 327 KPLGVPLQPYVKISKDDCPKSKEEANDMQSVPYASACGSLIYAMVATRPDIAHAVGVVSR 148 KP+ PL + K+SK+ PK++E+ + M VPYASA GSL+YAMV TRPDIAHAVGVVSR Sbjct: 1038 KPVSTPLGSHFKLSKEQSPKTEEKRDHMSKVPYASAIGSLMYAMVCTRPDIAHAVGVVSR 1097
Query: 147 FMENLGRLHWDVVKSIMRYLKGTKNKCLCYGKGPMELKG 31 FM G+ HW+VVK I+RYLKG+ + CLC+ ++L+G Sbjct: 1098 FMSRPGKQHWEVVKWILRYLKGSLDTCLCFTGASLKLQG 1136
Score = 22.7 bits (47), Expect(2) = 2e-27 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = -1
Query: 367 IEKVLDRFNIAEAK 326 ++KVL RFN+ EAK Sbjct: 1025 VKKVLSRFNMNEAK 1038
>tr|A5B1S3|A5B1S3_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_044445 PE=4 SV=1 Length = 1279
Score = 123 bits (308), Expect(2) = 2e-27 Identities = 57/99 (57%), Positives = 74/99 (74%) Frame = -2
Query: 327 KPLGVPLQPYVKISKDDCPKSKEEANDMQSVPYASACGSLIYAMVATRPDIAHAVGVVSR 148 KP+ PL + K+SK+ PK++EE + M VPYASA GSL+YAMV TRPDIAHAVGVVSR Sbjct: 1031 KPVSTPLGSHFKLSKEQSPKTEEERDHMSKVPYASAIGSLMYAMVCTRPDIAHAVGVVSR 1090
Query: 147 FMENLGRLHWDVVKSIMRYLKGTKNKCLCYGKGPMELKG 31 FM G+ HW+ VK I+RYLKG+ + CLC+ ++L+G Sbjct: 1091 FMSRPGKQHWEAVKWILRYLKGSLDTCLCFTGASLKLQG 1129
Score = 22.7 bits (47), Expect(2) = 2e-27 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = -1
Query: 367 IEKVLDRFNIAEAK 326 ++KVL RFN+ EAK Sbjct: 1018 VKKVLSRFNMNEAK 1031
>tr|A5BK92|A5BK92_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_023139 PE=4 SV=1 Length = 1222
Score = 123 bits (308), Expect(2) = 2e-27 Identities = 57/99 (57%), Positives = 74/99 (74%) Frame = -2
Query: 327 KPLGVPLQPYVKISKDDCPKSKEEANDMQSVPYASACGSLIYAMVATRPDIAHAVGVVSR 148 KP+ PL + K+SK+ PK++EE + M VPYASA GSL+YAMV TRPDIAHAVGVVSR Sbjct: 974 KPVSTPLGSHFKLSKEQSPKTEEERDHMSKVPYASAIGSLMYAMVCTRPDIAHAVGVVSR 1033
Query: 147 FMENLGRLHWDVVKSIMRYLKGTKNKCLCYGKGPMELKG 31 FM G+ HW+ VK I+RYLKG+ + CLC+ ++L+G Sbjct: 1034 FMSRPGKQHWEAVKWILRYLKGSLDTCLCFTGASLKLQG 1072
Score = 22.7 bits (47), Expect(2) = 2e-27 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = -1
Query: 367 IEKVLDRFNIAEAK 326 ++KVL RFN+ EAK Sbjct: 961 VKKVLSRFNMNEAK 974
>tr|A5BC72|A5BC72_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006839 PE=4 SV=1 Length = 1211
Score = 123 bits (308), Expect(2) = 2e-27 Identities = 57/99 (57%), Positives = 74/99 (74%) Frame = -2
Query: 327 KPLGVPLQPYVKISKDDCPKSKEEANDMQSVPYASACGSLIYAMVATRPDIAHAVGVVSR 148 KP+ PL + K+SK+ PK++EE + M VPYASA GSL+YAMV TRPDIAHAVGVVSR Sbjct: 963 KPVSTPLGSHFKLSKEQSPKTEEERDHMSKVPYASAIGSLMYAMVCTRPDIAHAVGVVSR 1022
Query: 147 FMENLGRLHWDVVKSIMRYLKGTKNKCLCYGKGPMELKG 31 FM G+ HW+ VK I+RYLKG+ + CLC+ ++L+G Sbjct: 1023 FMSRPGKQHWEAVKWILRYLKGSLDTCLCFTGASLKLQG 1061
Score = 22.7 bits (47), Expect(2) = 2e-27 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = -1
Query: 367 IEKVLDRFNIAEAK 326 ++KVL RFN+ EAK Sbjct: 950 VKKVLSRFNMNEAK 963
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