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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920252
Clone id YMU001_000134_G10
Library
Length 250
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000134_G10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AAGATAACTTGTAATGCTCTTACAAACTATGGATTAACCATTTCAACAATCCAAAATTAC
ACCCTGCATCTCCGAAAAACTACTTGATGCAGTGGCACTTTACTGTACCTCTATACCTCC
CCTGCTTTAGATGATCTTCCAAGGGTTCACCCACCCACCATAGCGCATAGACCTGCTATA
CTGTAAATTTCTCTGCTCGGTGAGTGACTCCCATTTGAGGTATGAGCGCGCACATGCTCA
TGCACGGAGA
■■Homology search results ■■ -
sp_hit_id Q6NYG8
Definition sp|Q6NYG8|DPYD_DANRE Dihydropyrimidine dehydrogenase [NADP+] OS=Danio rerio
Align length 71
Score (bit) 29.3
E-value 6.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920252|Adiantum capillus-veneris mRNA, clone:
YMU001_000134_G10.
         (250 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6NYG8|DPYD_DANRE Dihydropyrimidine dehydrogenase [NADP+] OS=...    29   6.3  
sp|Q27952|CASK_BALPH Kappa-casein (Fragment) OS=Balaenoptera phy...    29   6.3  

>sp|Q6NYG8|DPYD_DANRE Dihydropyrimidine dehydrogenase [NADP+] OS=Danio
            rerio GN=dpyd PE=2 SV=1
          Length = 1022

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
 Frame = +1

Query: 10   CNALTNYGLTISTIQNYTLHLRKTT*CSGTLLYLYTSPALDDLPRVHPPTIAH---RPAI 180
            C+A+ N   T+  I++Y L L+        LLYL +   L D     PPTI H   +P  
Sbjct: 816  CSAVQNQDFTV--IEDYCLGLK-------ALLYLKSIEELHDWDGQSPPTIRHQKGKPVP 866

Query: 181  L*ISLLGE*LP 213
                L+G+ LP
Sbjct: 867  HVSELIGKSLP 877


>sp|Q27952|CASK_BALPH Kappa-casein (Fragment) OS=Balaenoptera
           physalus GN=CSN3 PE=2 SV=1
          Length = 145

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 121 PALDDLPRVHPPTIAHRP 174
           P    LP +HPPT+AH P
Sbjct: 58  PQWQFLPNIHPPTVAHHP 75
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920252|Adiantum capillus-veneris mRNA, clone:
YMU001_000134_G10.
         (250 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******