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NBDC - LSDB Archive
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BP920261
Clone id YMU001_000134_H10
Library
Length 395
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000134_H10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GAGTACCTGCGAGAATAAGATATGAAAGATCCAGATTATGACCGTAGTTATAAGAGGTAT
CCTCAGCTGTTAGACCCCAGTGCAAGCGCGATTTTTCCAGCCTTGCAGAGGATGTACTTT
CCTATCAATGTGTATGACAAATATCCTCATCTGGATGGTCCTTGGGCTCCTCAATTACAG
GTGGAACAGTCAAGCTATATGCCAACTCTACCTTTCAGAGGACCTCGAGTAGAGTCATGT
TACCCAGATGTTTCCTATGCGCATTATGGTCAAAATCATTCCGATGCATATTGGCAGTGC
CAGAGGTTTCCAGCTCAAGCTCATACTGGGCACTATACCCACCTTAAAGACGGCTTTCCT
TATTCTTTTCAGCATGGTCTTCAATCTACGATGAG
■■Homology search results ■■ -
sp_hit_id A2A9I7
Definition sp|A2A9I7|DMRTB_MOUSE Doublesex- and mab-3-related transcription factor B1 OS=Mus musculus
Align length 32
Score (bit) 30.0
E-value 3.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920261|Adiantum capillus-veneris mRNA, clone:
YMU001_000134_H10.
         (395 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A2A9I7|DMRTB_MOUSE Doublesex- and mab-3-related transcription...    30   3.7  
sp|Q9Y7Y8|SYQ_SCHPO Probable glutaminyl-tRNA synthetase OS=Schiz...    29   6.4  
sp|O35185|BHLH2_MOUSE Class B basic helix-loop-helix protein 2 O...    29   6.4  
sp|O35780|BHLH2_RAT Class B basic helix-loop-helix protein 2 OS=...    29   8.3  
sp|Q99MY8|ASH1L_MOUSE Probable histone-lysine N-methyltransferas...    29   8.3  
sp|Q9NR48|ASH1L_HUMAN Probable histone-lysine N-methyltransferas...    29   8.3  
sp|Q9I1M2|ODBA_PSEAE 2-oxoisovalerate dehydrogenase subunit alph...    28   9.5  

>sp|A2A9I7|DMRTB_MOUSE Doublesex- and mab-3-related transcription
           factor B1 OS=Mus musculus GN=Dmrtb1 PE=2 SV=1
          Length = 359

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 157 GPWAPQ-LQVEQSSYMPTLPFRGPRVESCYPD 249
           GP AP  L+   S+++P L  + PR E CYPD
Sbjct: 138 GPGAPGGLRDRSSAWLPQLMPQAPRPELCYPD 169


>sp|Q9Y7Y8|SYQ_SCHPO Probable glutaminyl-tRNA synthetase
           OS=Schizosaccharomyces pombe GN=SPBC342.02 PE=2 SV=1
          Length = 811

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 22/61 (36%), Positives = 29/61 (47%)
 Frame = +1

Query: 52  KRYPQLLDPSASAIFPALQRMYFPINVYDKYPHLDGPWAPQLQVEQSSYMPTLPFRGPRV 231
           +RY QLL+PSASA+                  H    WAPQL+V+Q+     L   GP+ 
Sbjct: 145 QRY-QLLNPSASAL----------------RQHALLKWAPQLEVKQTLDRKFLELLGPKT 187

Query: 232 E 234
           E
Sbjct: 188 E 188


>sp|O35185|BHLH2_MOUSE Class B basic helix-loop-helix protein 2
           OS=Mus musculus GN=Bhlhb2 PE=1 SV=1
          Length = 411

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = +1

Query: 67  LLDPSASAIFPALQRMYFPINVYDKYPHLDGPWAPQLQVEQSSYMPT---LPFRGP 225
           L+ PSA+A  P L++ ++P +V   YP L+   A          +PT   LP R P
Sbjct: 327 LIPPSATAYLPMLEKCWYPTSVPVLYPGLNTSAAALSSFMNPDKIPTPLLLPQRLP 382


>sp|O35780|BHLH2_RAT Class B basic helix-loop-helix protein 2
           OS=Rattus norvegicus GN=Bhlhb2 PE=2 SV=1
          Length = 411

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = +1

Query: 67  LLDPSASAIFPALQRMYFPINVYDKYPHLDGPWAPQLQVEQSSYMPT---LPFRGP 225
           L+ PSA+A  P L++ ++P +V   YP L+   A          +PT   LP R P
Sbjct: 327 LIPPSATAYLPMLEKCWYPTSVPLLYPGLNTSAAALSSFMNPDKIPTPLLLPQRLP 382


>sp|Q99MY8|ASH1L_MOUSE Probable histone-lysine N-methyltransferase
            ASH1L OS=Mus musculus GN=Ash1l PE=2 SV=2
          Length = 2958

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 9/92 (9%)
 Frame = +1

Query: 22   MKDPDYDRSYKRYPQLLDPSASAIFPALQRMYFPINVYDKYPHLDGPWAPQLQVE----- 186
            ++ PD  +   R P++ +  A A  P +  + FP++    YP    P++P          
Sbjct: 1339 IRKPDLKKKRGRPPKMRE--AMAEMPFMHSLSFPLSSTGFYPSYGMPYSPSPLTAAPIGL 1396

Query: 187  --QSSYMPTL--PFRGPRVESCYPDVSYAHYG 270
                 Y PTL  P   P   +  P  SY H G
Sbjct: 1397 GYYGRYPPTLYPPPPSPSFTTPLPPPSYMHAG 1428


>sp|Q9NR48|ASH1L_HUMAN Probable histone-lysine N-methyltransferase
            ASH1L OS=Homo sapiens GN=ASH1L PE=1 SV=2
          Length = 2969

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 9/92 (9%)
 Frame = +1

Query: 22   MKDPDYDRSYKRYPQLLDPSASAIFPALQRMYFPINVYDKYPHLDGPWAPQLQVE----- 186
            ++ PD  +   R P++ +  A A  P +  + FP++    YP    P++P          
Sbjct: 1341 IRKPDLKKKRGRPPKMRE--AMAEMPFMHSLSFPLSSTGFYPSYGMPYSPSPLTAAPIGL 1398

Query: 187  --QSSYMPTL--PFRGPRVESCYPDVSYAHYG 270
                 Y PTL  P   P   +  P  SY H G
Sbjct: 1399 GYYGRYPPTLYPPPPSPSFTTPLPPPSYMHAG 1430


>sp|Q9I1M2|ODBA_PSEAE 2-oxoisovalerate dehydrogenase subunit alpha
           OS=Pseudomonas aeruginosa GN=bkdA1 PE=3 SV=1
          Length = 410

 Score = 28.1 bits (61), Expect(2) = 9.5
 Identities = 31/98 (31%), Positives = 35/98 (35%), Gaps = 6/98 (6%)
 Frame = +1

Query: 115 YFPINVYDKYPHLDGPWAPQLQVEQSSYMPTLPFRGPRV---ESCYPDVSYAHYGQNHSD 285
           Y  + V D   H  GPW PQL  EQ         RG R       +         Q    
Sbjct: 52  YSLVRVLDDDGHAVGPWNPQLSNEQL-------LRGMRAMLKTRLFDARMLTAQRQKKLS 104

Query: 286 AYWQCQRFPAQAHTGHYTHLKDG---FPYSFQHGLQST 390
            Y QC    A A T H   L+DG   FP   Q G+  T
Sbjct: 105 FYMQCLGEEAIA-TAHTLALRDGDMCFPTYRQQGILIT 141



 Score = 20.4 bits (41), Expect(2) = 9.5
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 72  RPQCKRDFSSL 104
           RP CK DFS L
Sbjct: 17  RPGCKTDFSYL 27
tr_hit_id B8LPB7
Definition tr|B8LPB7|B8LPB7_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 137
Score (bit) 52.8
E-value 9.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920261|Adiantum capillus-veneris mRNA, clone:
YMU001_000134_H10.
         (395 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8LPB7|B8LPB7_PICSI Putative uncharacterized protein OS=Picea...    53   9e-06
tr|A9NUZ4|A9NUZ4_PICSI Putative uncharacterized protein OS=Picea...    49   1e-04
tr|A7QLJ1|A7QLJ1_VITVI Chromosome undetermined scaffold_119, who...    48   3e-04
tr|A5AV15|A5AV15_VITVI Putative uncharacterized protein OS=Vitis...    48   3e-04
tr|Q652Q6|Q652Q6_ORYSJ cDNA clone:J013160I10, full insert sequen...    45   0.002
tr|A3C1N0|A3C1N0_ORYSJ Putative uncharacterized protein OS=Oryza...    45   0.002
tr|A2Z474|A2Z474_ORYSI Putative uncharacterized protein OS=Oryza...    45   0.002
tr|A9SL97|A9SL97_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.075
tr|A5AMT9|A5AMT9_VITVI Putative uncharacterized protein (Chromos...    40   0.075
tr|B4L3F5|B4L3F5_DROMO GI15536 OS=Drosophila mojavensis GN=GI155...    39   0.099
tr|A9SVC8|A9SVC8_PHYPA Predicted protein OS=Physcomitrella paten...    39   0.13 
tr|Q5BDQ5|Q5BDQ5_EMENI Putative uncharacterized protein OS=Emeri...    37   0.64 
tr|A2Q6F7|A2Q6F7_MEDTR Single-stranded nucleic acid binding R3H ...    36   0.83 
tr|Q4KIP0|Q4KIP0_PSEF5 Aromatic amino acid permease OS=Pseudomon...    35   1.4  
tr|B8M0T5|B8M0T5_9EURO snoRNP assembly factor Naf1, putative OS=...    35   1.4  
tr|Q0IFD1|Q0IFD1_AEDAE Putative uncharacterized protein OS=Aedes...    35   2.4  
tr|B7G5H1|B7G5H1_PHATR Predicted protein OS=Phaeodactylum tricor...    34   3.2  
tr|A8WU71|A8WU71_CAEBR CBR-HLH-14 protein OS=Caenorhabditis brig...    34   3.2  
tr|B6FW38|B6FW38_9CLOT Putative uncharacterized protein OS=Clost...    33   5.4  
tr|A7BVV3|A7BVV3_9GAMM Putative uncharacterized protein OS=Beggi...    33   5.4  
tr|Q3EB95|Q3EB95_ARATH Uncharacterized protein At3g10770.2 OS=Ar...    33   5.4  
tr|Q0UAG1|Q0UAG1_PHANO Putative uncharacterized protein OS=Phaeo...    33   5.4  
tr|B7FZD5|B7FZD5_PHATR Predicted protein OS=Phaeodactylum tricor...    33   9.2  
tr|Q4UAT0|Q4UAT0_THEAN Theileria-specific sub-telomeric protein,...    33   9.2  
tr|B4MEU0|B4MEU0_DROVI GJ14880 OS=Drosophila virilis GN=GJ14880 ...    33   9.2  
tr|B4KN60|B4KN60_DROMO GI19326 OS=Drosophila mojavensis GN=GI193...    33   9.2  
tr|B8PIS5|B8PIS5_9APHY Predicted protein OS=Postia placenta Mad-...    33   9.2  

>tr|B8LPB7|B8LPB7_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 187

 Score = 52.8 bits (125), Expect = 9e-06
 Identities = 42/137 (30%), Positives = 53/137 (38%), Gaps = 15/137 (10%)
 Frame = +1

Query: 10  RE*DMKDPDYDRSYKRYPQLLDPSASAIFP--ALQRMYFP-INVYDKYPHLDGPWAPQLQ 180
           RE D KDPDYDRSY RY Q  DP         ++Q MY P +N   ++P L  P   Q+ 
Sbjct: 34  REIDRKDPDYDRSYDRYSQRFDPGFGFNMGPYSMQAMYAPAVNYNTEFPQLGAPHRVQMP 93

Query: 181 VEQSSYMPTLPFRGPRVESC------YPDVSYAHYGQNHSDA------YWQCQRFPAQAH 324
           +E          RGP V S       + D     +  NH  A      Y    +F     
Sbjct: 94  MEPPPRTIPQHVRGPWVASTSTMGYGHLDTMMGPFNPNHMGAPSASAMYMHSSQFACPGP 153

Query: 325 TGHYTHLKDGFPYSFQH 375
           T  Y    +    S  H
Sbjct: 154 TMTYVRPHERIQQSLSH 170


>tr|A9NUZ4|A9NUZ4_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 376

 Score = 48.9 bits (115), Expect = 1e-04
 Identities = 43/137 (31%), Positives = 54/137 (39%), Gaps = 21/137 (15%)
 Frame = +1

Query: 10  RE*DMKDPDYDRSYKRYPQLLDPSASAIFPA--LQRMYFP-INVYDKYPHLDGPWAPQLQ 180
           RE D KDPDYDRSY RY Q  DP          +Q +Y P +N   ++P L  P   Q+ 
Sbjct: 222 REKDRKDPDYDRSYDRYNQRFDPGFGLNLGPFNMQALYTPLVNYNTEFPQLGTPHRAQIH 281

Query: 181 VEQSSYMPTLPFRGPRVESCY------------PDVSY-----AHYGQNHSDA-YWQCQR 306
           +E     P  P   P V   +            PD         H G + S A Y Q  +
Sbjct: 282 ME-----PPPPPVPPHVHGTWGLAPPNTMGYGPPDAMVRPFHPGHMGAHSSPAMYLQSSQ 336

Query: 307 FPAQAHTGHYTHLKDGF 357
           F        Y HL + F
Sbjct: 337 FACPGPAMSYIHLHEQF 353


>tr|A7QLJ1|A7QLJ1_VITVI Chromosome undetermined scaffold_119, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00001638001 PE=4 SV=1
          Length = 460

 Score = 47.8 bits (112), Expect = 3e-04
 Identities = 43/144 (29%), Positives = 56/144 (38%), Gaps = 19/144 (13%)
 Frame = +1

Query: 10  RE*DMKDPDYDRSYKRYPQLLDP--SASAIFPALQRMYFP-INVYDKYPHLDGPWAPQLQ 180
           RE D KDPDYDRSY RY Q  DP    +     +Q MY P +N   ++P L     PQ+ 
Sbjct: 306 REIDRKDPDYDRSYDRYLQRFDPGFGFNGGPYTIQPMYTPAVNYNTEFPQLGSAHRPQIS 365

Query: 181 VEQSSYMPTLPFRGPRVESCYP-DVSYAH-------YGQNH------SDAYWQCQRFPAQ 318
            E           GP      P  + Y H       +  NH      S  Y    ++P Q
Sbjct: 366 TEHQPRPLPQHLSGPWPAPSTPTGIGYGHPETMMSPFNPNHVGARSTSTLYLPSSQYPCQ 425

Query: 319 AHTGHYTHLKDGF--PYSFQHGLQ 384
                + H  +    P+S  H  Q
Sbjct: 426 RPGMPFIHPHEHVHQPFSQSHQQQ 449


>tr|A5AV15|A5AV15_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_041705 PE=4 SV=1
          Length = 408

 Score = 47.8 bits (112), Expect = 3e-04
 Identities = 43/144 (29%), Positives = 56/144 (38%), Gaps = 19/144 (13%)
 Frame = +1

Query: 10  RE*DMKDPDYDRSYKRYPQLLDP--SASAIFPALQRMYFP-INVYDKYPHLDGPWAPQLQ 180
           RE D KDPDYDRSY RY Q  DP    +     +Q MY P +N   ++P L     PQ+ 
Sbjct: 219 REIDRKDPDYDRSYDRYLQRFDPGFGFNGGPYTIQPMYTPAVNYNTEFPQLGSAHRPQIS 278

Query: 181 VEQSSYMPTLPFRGPRVESCYP-DVSYAH-------YGQNH------SDAYWQCQRFPAQ 318
            E           GP      P  + Y H       +  NH      S  Y    ++P Q
Sbjct: 279 TEHQPRPLPQHLSGPWPAPSTPTGIGYGHPETMMSPFNPNHVGARSTSTLYLPSSQYPCQ 338

Query: 319 AHTGHYTHLKDGF--PYSFQHGLQ 384
                + H  +    P+S  H  Q
Sbjct: 339 RPGMPFIHPHEHVHQPFSQSHQQQ 362


>tr|Q652Q6|Q652Q6_ORYSJ cDNA clone:J013160I10, full insert sequence
           OS=Oryza sativa subsp. japonica GN=OJ1003_C09.7-1 PE=2
           SV=1
          Length = 455

 Score = 44.7 bits (104), Expect = 0.002
 Identities = 29/88 (32%), Positives = 37/88 (42%), Gaps = 23/88 (26%)
 Frame = +1

Query: 10  RE*DMKDPDYDRSYKRYPQLLDP--SASAIFPALQRMYFP-INVYDKYP----------- 147
           RE D KDPDYDRSY RY Q  DP    +     +Q +Y P +N   ++P           
Sbjct: 300 RESDRKDPDYDRSYDRYMQRFDPGFGFNGGSYTIQPLYAPAVNYNTEFPQLGSHGSPVPV 359

Query: 148 ---------HLDGPWAPQLQVEQSSYMP 204
                    H+ GPW+P        Y P
Sbjct: 360 EQQPQSIAQHIPGPWSPAQSPNAIGYRP 387


>tr|A3C1N0|A3C1N0_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_029202 PE=4 SV=1
          Length = 376

 Score = 44.7 bits (104), Expect = 0.002
 Identities = 29/88 (32%), Positives = 37/88 (42%), Gaps = 23/88 (26%)
 Frame = +1

Query: 10  RE*DMKDPDYDRSYKRYPQLLDP--SASAIFPALQRMYFP-INVYDKYP----------- 147
           RE D KDPDYDRSY RY Q  DP    +     +Q +Y P +N   ++P           
Sbjct: 221 RESDRKDPDYDRSYDRYMQRFDPGFGFNGGSYTIQPLYAPAVNYNTEFPQLGSHGSPVPV 280

Query: 148 ---------HLDGPWAPQLQVEQSSYMP 204
                    H+ GPW+P        Y P
Sbjct: 281 EQQPQSIAQHIPGPWSPAQSPNAIGYRP 308


>tr|A2Z474|A2Z474_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_32444 PE=4 SV=1
          Length = 441

 Score = 44.7 bits (104), Expect = 0.002
 Identities = 29/88 (32%), Positives = 37/88 (42%), Gaps = 23/88 (26%)
 Frame = +1

Query: 10  RE*DMKDPDYDRSYKRYPQLLDP--SASAIFPALQRMYFP-INVYDKYP----------- 147
           RE D KDPDYDRSY RY Q  DP    +     +Q +Y P +N   ++P           
Sbjct: 286 RESDRKDPDYDRSYDRYMQRFDPGFGFNGGSYTIQPLYAPAVNYNTEFPQLGSHGSPVPV 345

Query: 148 ---------HLDGPWAPQLQVEQSSYMP 204
                    H+ GPW+P        Y P
Sbjct: 346 EQQPQSIAQHIPGPWSPAQSPNAIGYRP 373


>tr|A9SL97|A9SL97_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_165532 PE=4 SV=1
          Length = 659

 Score = 39.7 bits (91), Expect = 0.075
 Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
 Frame = +1

Query: 10  RE*DMKDPDYDRSYKRYPQLLDPSASAIFPAL--QRMYFP-INVYDKYPHLDGPWAPQLQ 180
           RE D +DPDYDRS  RY Q  DP           Q +Y P +N   ++P L  P   QL 
Sbjct: 508 REKDRRDPDYDRSTARYAQRFDPGFGVSMGPYGGQALYAPVVNYNTEFPQLGVPPRGQLH 567

Query: 181 VE 186
           ++
Sbjct: 568 MD 569


>tr|A5AMT9|A5AMT9_VITVI Putative uncharacterized protein (Chromosome
           chr8 scaffold_29, whole genome shotgun sequence)
           OS=Vitis vinifera GN=GSVIVT00023292001 PE=4 SV=1
          Length = 356

 Score = 39.7 bits (91), Expect = 0.075
 Identities = 32/78 (41%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
 Frame = +1

Query: 10  RE*DMKDPDYDRSYKRYPQLLDPSAS---AIFPALQRMYFPINVYDK-YPHLDGPWAPQL 177
           RE D  DPDYDRSY+RY + L  + S   A F A Q++  P   YD  +P L      Q+
Sbjct: 231 REKDRTDPDYDRSYERYVRNLPTNQSFSLAPFDA-QKIQHPFLQYDTGFPQLG-----QI 284

Query: 178 QVEQS--SYMPTLPFRGP 225
           Q  Q+  SY P+ P   P
Sbjct: 285 QRTQASLSYRPSNPIMNP 302


>tr|B4L3F5|B4L3F5_DROMO GI15536 OS=Drosophila mojavensis GN=GI15536
           PE=4 SV=1
          Length = 753

 Score = 39.3 bits (90), Expect = 0.099
 Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
 Frame = +1

Query: 145 PHLDGPWAPQLQVEQSSYMPTLPFRGPRVESCYPDVSYAHYG-----QNHSDAYWQCQRF 309
           PH+    APQ Q +Q    P  P   P +    P + YA+YG     Q+    Y+Q Q  
Sbjct: 518 PHMPPHMAPQQQQQQPPQQPP-PGGMPGLPPPLPHMGYANYGGPGPGQHSHTHYYQPQYG 576

Query: 310 PAQAHTGHYTHLKDGFPYSFQH 375
           P      +YTHL    PYS  H
Sbjct: 577 PHSRPQPYYTHLPPYQPYSPLH 598