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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920263
Clone id YMU001_000135_A01
Library
Length 550
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000135_A01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CCTTTTACAGCACCCAATTCTAAGTTATAGGCTGAAAGTTATGGTGAAAACAAGGTGCTG
CGGACACTGTTACTGCAGGTCAAAGTTACAATCAGGTAAACCACAAAGGTGAAAAGTTTT
CTTGACTTCTCCAACATTTTAAAATACCAATGGGGAGTTAAAAACCACTTGCATGTGGAG
GGGTCGGCTCAAGATGCTTCCAGAGACACAACAAACGGGATGGGGACACTCTGCAGGAGC
CACTGGAGGGACATCATGGTGGGGCCCACATACATTATCAACCCTTATGGAGCCTCCATG
ACCTAAAAGGCTATTTTTAATGAAAAAATAAGTCCCTTATTTGCATAATTGAAGGAATGG
TCAAAAGGGAACTTAACTATGGTTAATTACCTACCCTAGTCAAGTTTAATCTAACCCGAG
GTCTTGTACAGCTATAAAAAGGCCCTTTGGCAAGCACAAAAATACACACACCTACTCCAT
TGCTGCAAATAAGCTCCTCTAAGGTTAGGGAAGCCCTAATCTCTCTCTCCTCTTGTCTCC
CTATCCATTT
■■Homology search results ■■ -
sp_hit_id Q3J8T1
Definition sp|Q3J8T1|RS5_NITOC 30S ribosomal protein S5 OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848)
Align length 22
Score (bit) 33.5
E-value 0.69
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920263|Adiantum capillus-veneris mRNA, clone:
YMU001_000135_A01.
         (550 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q3J8T1|RS5_NITOC 30S ribosomal protein S5 OS=Nitrosococcus oc...    33   0.69 
sp|Q5QXW2|RS5_IDILO 30S ribosomal protein S5 OS=Idiomarina loihi...    32   1.5  
sp|A1T0C5|RS5_PSYIN 30S ribosomal protein S5 OS=Psychromonas ing...    32   2.0  
sp|Q15X56|RS5_PSEA6 30S ribosomal protein S5 OS=Pseudoalteromona...    31   4.5  
sp|Q9ZUU7|PP174_ARATH Pentatricopeptide repeat-containing protei...    31   4.5  
sp|P34059|GALNS_HUMAN N-acetylgalactosamine-6-sulfatase OS=Homo ...    31   4.6  
sp|P37917|TSAS_ORITS 56 kDa type-specific antigen OS=Orientia ts...    30   6.0  
sp|Q5SKG5|THIC_THET8 Thiamine biosynthesis protein thiC OS=Therm...    30   6.0  
sp|Q72KP6|THIC_THET2 Thiamine biosynthesis protein thiC OS=Therm...    30   6.0  

>sp|Q3J8T1|RS5_NITOC 30S ribosomal protein S5 OS=Nitrosococcus
           oceani (strain ATCC 19707 / NCIMB 11848) GN=rpsE PE=3
           SV=1
          Length = 170

 Score = 33.5 bits (75), Expect = 0.69
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 219 DGDTLQEPLEGHHGGAHIHYQP 284
           +GDTLQ P+   HG A +H QP
Sbjct: 79  EGDTLQHPITARHGAAKVHMQP 100


>sp|Q5QXW2|RS5_IDILO 30S ribosomal protein S5 OS=Idiomarina
           loihiensis GN=rpsE PE=3 SV=1
          Length = 166

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +3

Query: 222 GDTLQEPLEGHHGGAHIHYQP 284
           GDTLQ P++G H G+ ++ QP
Sbjct: 78  GDTLQHPVKGRHSGSQVYMQP 98


>sp|A1T0C5|RS5_PSYIN 30S ribosomal protein S5 OS=Psychromonas
           ingrahamii (strain 37) GN=rpsE PE=3 SV=1
          Length = 167

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 4/31 (12%)
 Frame = +3

Query: 204 RHNKRD----GDTLQEPLEGHHGGAHIHYQP 284
           R N RD    G+TLQ P++G H G+ ++ QP
Sbjct: 69  RRNIRDVQLKGNTLQHPIKGRHSGSKVYMQP 99


>sp|Q15X56|RS5_PSEA6 30S ribosomal protein S5 OS=Pseudoalteromonas
           atlantica (strain T6c / BAA-1087) GN=rpsE PE=3 SV=1
          Length = 167

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +3

Query: 219 DGDTLQEPLEGHHGGAHIHYQP 284
           +G+TLQ P++G H G+ ++ QP
Sbjct: 78  NGNTLQHPIKGRHSGSKVYMQP 99


>sp|Q9ZUU7|PP174_ARATH Pentatricopeptide repeat-containing protein
           At2g28050 OS=Arabidopsis thaliana GN=At2g28050 PE=2 SV=1
          Length = 462

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 16/53 (30%), Positives = 30/53 (56%)
 Frame = -3

Query: 161 LTPHWYFKMLEKSRKLFTFVVYLIVTLTCSNSVRSTLFSP*LSAYNLELGAVK 3
           +TP  + K L+ +++ +TF +Y +  L  S+S+  TL SP     +L L  ++
Sbjct: 1   MTPQCFLKTLKTAKQTYTFSIYKL--LLNSSSINQTLASPETPLSDLNLSTLR 51


>sp|P34059|GALNS_HUMAN N-acetylgalactosamine-6-sulfatase OS=Homo
           sapiens GN=GALNS PE=1 SV=1
          Length = 522

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
 Frame = -1

Query: 268 WAPP*CPSSGSCRVSPSRL--LCLWKH 194
           WAPP C   G C   P  +   CLW H
Sbjct: 496 WAPPGCEKLGKCLTPPESIPKKCLWSH 522


>sp|P37917|TSAS_ORITS 56 kDa type-specific antigen OS=Orientia
           tsutsugamushi PE=4 SV=1
          Length = 521

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 15/56 (26%), Positives = 31/56 (55%)
 Frame = +1

Query: 229 LCRSHWRDIMVGPTYIINPYGASMT*KAIFNEKISPLFA*LKEWSKGNLTMVNYLP 396
           L  + WRD++VG T + N    +++   I ++KIS ++A +K ++      ++  P
Sbjct: 221 LDHAQWRDVVVGITALSNANKPNVSAVKILSDKISQIYADIKPFANVASVQISETP 276


>sp|Q5SKG5|THIC_THET8 Thiamine biosynthesis protein thiC OS=Thermus
           thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=thiC
           PE=3 SV=1
          Length = 435

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = +2

Query: 188 LKMLPETQQTGWGHSAGATGG--TSWWGPHTLSTL 286
           L MLP     G+ H AGA GG    WWG   L  L
Sbjct: 294 LGMLPVDTAAGFDHIAGAIGGALAGWWGADMLCYL 328


>sp|Q72KP6|THIC_THET2 Thiamine biosynthesis protein thiC OS=Thermus
           thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
           GN=thiC PE=3 SV=1
          Length = 435

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = +2

Query: 188 LKMLPETQQTGWGHSAGATGG--TSWWGPHTLSTL 286
           L MLP     G+ H AGA GG    WWG   L  L
Sbjct: 294 LGMLPVDTAAGFDHIAGAIGGALAGWWGADMLCYL 328
tr_hit_id Q8VIV7
Definition tr|Q8VIV7|Q8VIV7_MYCTU Putative uncharacterized protein OS=Mycobacterium tuberculosis
Align length 41
Score (bit) 34.3
E-value 4.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920263|Adiantum capillus-veneris mRNA, clone:
YMU001_000135_A01.
         (550 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q8VIV7|Q8VIV7_MYCTU Putative uncharacterized protein OS=Mycob...    34   4.4  
tr|B6BZG6|B6BZG6_9GAMM Ribosomal protein S5, C-terminal domain O...    33   7.5  
tr|Q4RWF9|Q4RWF9_TETNG Chromosome undetermined SCAF14988, whole ...    33   7.7  
tr|A9V303|A9V303_MONBE Predicted protein OS=Monosiga brevicollis...    33   10.0 

>tr|Q8VIV7|Q8VIV7_MYCTU Putative uncharacterized protein
           OS=Mycobacterium tuberculosis GN=MT3770 PE=4 SV=1
          Length = 236

 Score = 34.3 bits (77), Expect = 4.4
 Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
 Frame = +3

Query: 168 LACGGVGSRCFQRHN----KRDGDTLQEPLEGHHGGAHIHY 278
           +A G  G+R F R N      D    QE  EG HGG H HY
Sbjct: 1   MARGKCGARLFDRRNGLPRSPDAPDFQETQEGQHGGDHDHY 41


>tr|B6BZG6|B6BZG6_9GAMM Ribosomal protein S5, C-terminal domain
           OS=Nitrosococcus oceani AFC27 GN=NOC27_1723 PE=4 SV=1
          Length = 105

 Score = 33.5 bits (75), Expect = 7.5
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 219 DGDTLQEPLEGHHGGAHIHYQP 284
           +GDTLQ P+   HG A +H QP
Sbjct: 14  EGDTLQHPITARHGAAKVHMQP 35


>tr|Q4RWF9|Q4RWF9_TETNG Chromosome undetermined SCAF14988, whole
           genome shotgun sequence. (Fragment) OS=Tetraodon
           nigroviridis GN=GSTENG00027880001 PE=4 SV=1
          Length = 329

 Score = 33.5 bits (75), Expect = 7.7
 Identities = 21/74 (28%), Positives = 33/74 (44%)
 Frame = +2

Query: 77  RSKLQSGKPQR*KVFLTSPTF*NTNGELKTTCMWRGRLKMLPETQQTGWGHSAGATGGTS 256
           R++L SG  Q+      S           TT +W    +++P    T WGH+A       
Sbjct: 238 RTRLLSGLAQQLVAMAASRDMAVVVTNQMTTRVWGTHSEVVPALGDT-WGHAAAIRLRLQ 296

Query: 257 WWGPHTLSTLMEPP 298
           W GP  L+T+++ P
Sbjct: 297 WEGPRRLATIVKSP 310


>tr|A9V303|A9V303_MONBE Predicted protein OS=Monosiga brevicollis
           GN=37642 PE=4 SV=1
          Length = 967

 Score = 33.1 bits (74), Expect = 10.0
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = +2

Query: 143 NTNGELKTTCMWRGRLKMLPETQ 211
           N+N ++K +C+WRG+L+M P  Q
Sbjct: 55  NSNNQVKASCLWRGQLRMSPGDQ 77