BP920265
Clone id YMU001_000135_A03
Library
Length 441
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000135_A03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CAAATCGTGTGCACAGGTCAGTAAAACGATCAGCTACAAAATCCGAAACTGACAGAGCAA
ATCATATTGAGACGAGAGATATCTCTAGAATTCCAATGTCAGCCAGCACCTTGTTTAAGC
AGCCGATAAGAGCTAACCCTCGCAAGATTGTCACAGCTTTTCTGCCGACATCTTCTATCA
AACCATCAGTGAGCCAGAACCTACGCAATAAACATCCCTGAGAAAACGTGGGCAAGAGGA
TAGCCAAGACAATTTACCAGTAAACCCCTTGGCCACAATGTGACGATGCCCAATGCGCCA
TATTATGAGACAGCTCCATCCCACTTGCTTGATATCTATCCCTCTCCTTTGTAGTGGTTT
AAGACTTTAGCTTTTCCAAGTTGGAAAAGACTTTATGCCTACTCTCTCTTATCTTCCTCA
GCTTCATCATTCAAGCTAAAA
■■Homology search results ■■ -
sp_hit_id Q32DZ9
Definition sp|Q32DZ9|MACB_SHIDS Macrolide export ATP-binding/permease protein macB OS=Shigella dysenteriae serotype 1 (strain Sd197)
Align length 56
Score (bit) 33.5
E-value 0.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920265|Adiantum capillus-veneris mRNA, clone:
YMU001_000135_A03.
(441 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q32DZ9|MACB_SHIDS Macrolide export ATP-binding/permease prote... 33 0.40
sp|Q3Z3Q4|MACB_SHISS Macrolide export ATP-binding/permease prote... 32 1.5
sp|Q83LR7|MACB_SHIFL Macrolide export ATP-binding/permease prote... 32 1.5
sp|Q323M3|MACB_SHIBS Macrolide export ATP-binding/permease prote... 32 1.5
sp|Q1RE44|MACB_ECOUT Macrolide export ATP-binding/permease prote... 32 1.5
sp|P75831|MACB_ECOLI Macrolide export ATP-binding/permease prote... 32 1.5
sp|Q0TJH0|MACB_ECOL5 Macrolide export ATP-binding/permease prote... 32 1.5
sp|A1A9B7|MACB1_ECOK1 Macrolide export ATP-binding/permease prot... 32 1.5
sp|Q06339|TFC6_YEAST Transcription factor tau 91 kDa subunit OS=... 31 2.0
sp|Q8XED0|MACB_ECO57 Macrolide export ATP-binding/permease prote... 31 2.6
sp|Q9TKU9|RK32_NEPOL 50S ribosomal protein L32, chloroplastic OS... 30 5.7
sp|P41833|IME4_YEAST N6-adenosine-methyltransferase IME4 OS=Sacc... 30 5.7
sp|A1L2I9|T214B_XENLA Transmembrane protein 214-B OS=Xenopus lae... 29 7.5
sp|Q92576|PHF3_HUMAN PHD finger protein 3 OS=Homo sapiens GN=PHF... 29 7.5

>sp|Q32DZ9|MACB_SHIDS Macrolide export ATP-binding/permease protein
macB OS=Shigella dysenteriae serotype 1 (strain Sd197)
GN=macB PE=3 SV=1
Length = 650

Score = 33.5 bits (75), Expect = 0.40
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = -3

Query: 196 WLTDGLIEDVGRKAVTILRGLALIGCLNKVLADIGILEISLVSI*FALSVSDFVAD 29
W DG+++ V + T+ L L+ ++ V+ IG++ I LVS+ S +D D
Sbjct: 505 WNMDGVLKTVEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTSANDIPMD 560


>sp|Q3Z3Q4|MACB_SHISS Macrolide export ATP-binding/permease protein
macB OS=Shigella sonnei (strain Ss046) GN=macB PE=3 SV=1
Length = 648

Score = 31.6 bits (70), Expect = 1.5
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = -3

Query: 196 WLTDGLIEDVGRKAVTILRGLALIGCLNKVLADIGILEISLVSI 65
W DG+++ V + T+ L L+ ++ V+ IG++ I LVS+
Sbjct: 505 WNMDGVLKTVEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSV 548


>sp|Q83LR7|MACB_SHIFL Macrolide export ATP-binding/permease protein
macB OS=Shigella flexneri GN=macB PE=3 SV=1
Length = 648

Score = 31.6 bits (70), Expect = 1.5
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = -3

Query: 196 WLTDGLIEDVGRKAVTILRGLALIGCLNKVLADIGILEISLVSI 65
W DG+++ V + T+ L L+ ++ V+ IG++ I LVS+
Sbjct: 505 WNMDGVLKTVEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSV 548


>sp|Q323M3|MACB_SHIBS Macrolide export ATP-binding/permease protein
macB OS=Shigella boydii serotype 4 (strain Sb227)
GN=macB PE=3 SV=1
Length = 648

Score = 31.6 bits (70), Expect = 1.5
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = -3

Query: 196 WLTDGLIEDVGRKAVTILRGLALIGCLNKVLADIGILEISLVSI 65
W DG+++ V + T+ L L+ ++ V+ IG++ I LVS+
Sbjct: 505 WNMDGVLKTVEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSV 548


>sp|Q1RE44|MACB_ECOUT Macrolide export ATP-binding/permease protein
macB OS=Escherichia coli (strain UTI89 / UPEC) GN=macB
PE=3 SV=1
Length = 648

Score = 31.6 bits (70), Expect = 1.5
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = -3

Query: 196 WLTDGLIEDVGRKAVTILRGLALIGCLNKVLADIGILEISLVSI 65
W DG+++ V + T+ L L+ ++ V+ IG++ I LVS+
Sbjct: 505 WNMDGVLKTVEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSV 548


>sp|P75831|MACB_ECOLI Macrolide export ATP-binding/permease protein
macB OS=Escherichia coli (strain K12) GN=macB PE=1 SV=1
Length = 648

Score = 31.6 bits (70), Expect = 1.5
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = -3

Query: 196 WLTDGLIEDVGRKAVTILRGLALIGCLNKVLADIGILEISLVSI 65
W DG+++ V + T+ L L+ ++ V+ IG++ I LVS+
Sbjct: 505 WNMDGVLKTVEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSV 548


>sp|Q0TJH0|MACB_ECOL5 Macrolide export ATP-binding/permease protein
macB OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC)
GN=macB PE=3 SV=1
Length = 648

Score = 31.6 bits (70), Expect = 1.5
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = -3

Query: 196 WLTDGLIEDVGRKAVTILRGLALIGCLNKVLADIGILEISLVSI 65
W DG+++ V + T+ L L+ ++ V+ IG++ I LVS+
Sbjct: 505 WNMDGVLKTVEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSV 548


>sp|A1A9B7|MACB1_ECOK1 Macrolide export ATP-binding/permease protein
macB 1 OS=Escherichia coli O1:K1 / APEC GN=macB1 PE=3
SV=1
Length = 648

Score = 31.6 bits (70), Expect = 1.5
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = -3

Query: 196 WLTDGLIEDVGRKAVTILRGLALIGCLNKVLADIGILEISLVSI 65
W DG+++ V + T+ L L+ ++ V+ IG++ I LVS+
Sbjct: 505 WNMDGVLKTVEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSV 548


>sp|Q06339|TFC6_YEAST Transcription factor tau 91 kDa subunit
OS=Saccharomyces cerevisiae GN=TFC6 PE=1 SV=1
Length = 672

Score = 31.2 bits (69), Expect = 2.0
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +3

Query: 129 RANPRKIVTAFLPTSSIKPSVSQNLRNKHP*ENVGKRIAKTIYQ 260
R PRK V A +P S+ VS+N +K P N K+ Q
Sbjct: 9 RGRPRKSVVAEVPYDSLASPVSENSGSKRPRRNASKKAVANFAQ 52


>sp|Q8XED0|MACB_ECO57 Macrolide export ATP-binding/permease protein
macB OS=Escherichia coli O157:H7 GN=macB PE=3 SV=1
Length = 648

Score = 30.8 bits (68), Expect = 2.6
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = -3

Query: 196 WLTDGLIEDVGRKAVTILRGLALIGCLNKVLADIGILEISLVSI 65
W DG+++ V + T+ + L+ ++ V+ IG++ I LVS+
Sbjct: 505 WNMDGVLKTVEKTTRTLQLFMTLVAVISLVVGGIGVMNIMLVSV 548


tr_hit_id B4WYD1
Definition tr|B4WYD1|B4WYD1_9GAMM Primosomal protein N', putative OS=Alcanivorax sp. DG881
Align length 55
Score (bit) 33.9
E-value 4.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920265|Adiantum capillus-veneris mRNA, clone:
YMU001_000135_A03.
(441 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B4WYD1|B4WYD1_9GAMM Primosomal protein N', putative OS=Alcani... 34 4.1
tr|Q8BRF4|Q8BRF4_MOUSE Putative uncharacterized protein (Fragmen... 33 9.2

>tr|B4WYD1|B4WYD1_9GAMM Primosomal protein N', putative
OS=Alcanivorax sp. DG881 GN=ADG881_1796 PE=4 SV=1
Length = 724

Score = 33.9 bits (76), Expect = 4.1
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +3

Query: 48 TDRANHIETRDISRIPMSASTLFKQPIRANPRKIVTAFLPTSSIKPSVSQNLRNK 212
TDR H+ +SR P L + +R +P+ + +A L + PS +LR+K
Sbjct: 120 TDRGQHVNDDQVSRAPRQRDAL--RILREHPQGLSSAMLAALEVSPSALSSLRDK 172


>tr|Q8BRF4|Q8BRF4_MOUSE Putative uncharacterized protein (Fragment)
OS=Mus musculus GN=Sncaip PE=2 SV=1
Length = 687

Score = 32.7 bits (73), Expect = 9.2
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Frame = +1

Query: 31 QLQNPKLTEQIILRREISLEFQCQPAPCLSS------R*ELTLARLSQLFCRHL 174
QL +++E + + ++SLEFQ A C +S + EL LARL QL R L
Sbjct: 621 QLLGKEISENVCTQEKLSLEFQDAQASCRNSKKIPLEKRELKLARLRQLMQRSL 674