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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920270
Clone id YMU001_000135_A08
Library
Length 448
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000135_A08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CAGAAAATCAGTTTTGGAGGCAGCTAAGAGAGCAGTCCATTCTGGGCCCAATGCAGAAAG
GATCCTTGTGGATCTGAGAGAATGTGAGAAGCTGGTTGAAGGGGCCTGAAGAGAAGAGAC
CCAATTCGAAACTGAGTCTGGAAATTTTTATTAATCTTGATTGCTTGCTGCTTGTTATTG
GTTTTGATTATGTTTGGGAGAACTGGCTGAGGAGCTTATTAAGTTAAAGCCAATGTTGAG
GTGTTTTTTTTTGTATATCATACGGGAGAACATACGAAGAGTCGTTTTTTCAAGGGCAGC
TTGTTGTAGGGACTTTCCCCTACAACACGCAGTTGGTTTGCTGACATGGTCATTGTCAGC
TCTCAAAACTTTTGAAAATGGCTTTACCTTGATCACATTGTGATGCTCTCCAGAGGTTCC
CTCTTCACTGAAGAAGTATTTTGGGGTC
■■Homology search results ■■ -
sp_hit_id Q9TIB6
Definition sp|Q9TIB6|MATK_ELEIN Maturase K OS=Eleusine indica
Align length 59
Score (bit) 31.6
E-value 1.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920270|Adiantum capillus-veneris mRNA, clone:
YMU001_000135_A08.
         (448 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9TIB6|MATK_ELEIN Maturase K OS=Eleusine indica GN=matK PE=3 ...    32   1.6  
sp|P29060|CHIA_TOBAC Acidic endochitinase OS=Nicotiana tabacum P...    31   2.1  
sp|Q55GE6|ROCO7_DICDI Probable serine/threonine-protein kinase r...    31   2.8  
sp|Q9FDW0|FRIGI_ARATH Protein FRIGIDA OS=Arabidopsis thaliana GN...    31   2.8  
sp|O64645|SOC1_ARATH MADS-box protein SOC1 OS=Arabidopsis thalia...    30   6.0  
sp|O58107|GAL1_PYRHO Probable galactokinase OS=Pyrococcus horiko...    30   6.1  

>sp|Q9TIB6|MATK_ELEIN Maturase K OS=Eleusine indica GN=matK PE=3
           SV=1
          Length = 513

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = -1

Query: 211 LSQFSQT*SKPITSSKQSRLIKISRLSFE-LGLFSSGPFNQLLTFSQIHKDPFCIGPRM 38
           L  F Q  S   T  ++ RL +++R  F+ LG FSS P N  L  +Q+ ++ F I  RM
Sbjct: 305 LVNFPQYPSSSWTQPQRIRLNQLTRSCFDFLGYFSSVPINTFLVRNQMLENFFLIDTRM 363


>sp|P29060|CHIA_TOBAC Acidic endochitinase OS=Nicotiana tabacum PE=1
           SV=1
          Length = 291

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -1

Query: 268 LPYDIQKKTPQHWL*LNKLLSQFSQT*SKPITSSKQ 161
           + +DI+  T QHW  L K LSQFSQ     +T++ Q
Sbjct: 144 IDFDIEGGTTQHWDELAKTLSQFSQQRKVYLTAAPQ 179


>sp|Q55GE6|ROCO7_DICDI Probable serine/threonine-protein kinase
           roco7 OS=Dictyostelium discoideum GN=roco7 PE=3 SV=1
          Length = 2615

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = -2

Query: 132 VSNWVSSLQAPSTSFSHSLRSTRILSALGPEWTA 31
           ++ WVSS Q  + S S  ++STR++ +   +WT+
Sbjct: 630 INPWVSSYQNSNISNSDQVQSTRVVQSFSKKWTS 663


>sp|Q9FDW0|FRIGI_ARATH Protein FRIGIDA OS=Arabidopsis thaliana
           GN=FRI PE=2 SV=1
          Length = 609

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 24/79 (30%), Positives = 38/79 (48%)
 Frame = -2

Query: 309 LQQAALEKTTLRMFSRMIYKKKHLNIGFNLISSSASSPKHXXXXXXXXXXQD**KFPDSV 130
           +++AAL K   RM+++ I + +   +    ++SS+ SP +           D     D +
Sbjct: 438 MEEAALAK---RMYNQQIKRPRLSPMEMPPVTSSSYSPIYRDRSFPSQRDDD----QDEI 490

Query: 129 SNWVSSLQAPSTSFSHSLR 73
           S  VSS   PSTSF H  R
Sbjct: 491 SALVSSYLGPSTSFPHRSR 509


>sp|O64645|SOC1_ARATH MADS-box protein SOC1 OS=Arabidopsis thaliana
           GN=SOC1 PE=1 SV=1
          Length = 214

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 57  KGSLWI*ENVRSWLKGPEEKRPNSKLSLEIFINLDC 164
           +  +W  +N  S  +G EE  P+S++  ++FI L C
Sbjct: 175 ESEVWSNKNQESTGRGDEESSPSSEVETQLFIGLPC 210


>sp|O58107|GAL1_PYRHO Probable galactokinase OS=Pyrococcus
           horikoshii GN=galK PE=1 SV=1
          Length = 350

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = +2

Query: 212 ELIKLKPMLRCFFLYIIRENIR 277
           EL KL P+ R FF YI+REN R
Sbjct: 224 ELSKLPPLHRKFFGYIVRENAR 245
tr_hit_id B7KX89
Definition tr|B7KX89|B7KX89_METCH Multi-sensor hybrid histidine kinase OS=Methylobacterium chloromethanicum CM4
Align length 66
Score (bit) 33.9
E-value 4.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920270|Adiantum capillus-veneris mRNA, clone:
YMU001_000135_A08.
         (448 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B7KX89|B7KX89_METCH Multi-sensor hybrid histidine kinase OS=M...    34   4.2  
tr|A3BH92|A3BH92_ORYSJ Putative uncharacterized protein OS=Oryza...    33   5.3  
tr|Q2JW22|Q2JW22_SYNJA Base excision DNA repair protein, HhH-GPD...    33   7.2  
tr|Q2JJR5|Q2JJR5_SYNJB Base excision DNA repair protein, HhH-GPD...    33   7.2  

>tr|B7KX89|B7KX89_METCH Multi-sensor hybrid histidine kinase
           OS=Methylobacterium chloromethanicum CM4 GN=Mchl_5380
           PE=4 SV=1
          Length = 890

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 21/66 (31%), Positives = 35/66 (53%)
 Frame = -1

Query: 220 NKLLSQFSQT*SKPITSSKQSRLIKISRLSFELGLFSSGPFNQLLTFSQIHKDPFCIGPR 41
           N +L+   Q   + +  S+QSR + I   + E+G +    FN +LT+S   K  F I P 
Sbjct: 164 NAVLTAEQQADREQLAFSEQSRQLAIE--AAEIGTWDFNLFNDVLTWSDRTKAMFGISPN 221

Query: 40  MDCSLS 23
           + CS++
Sbjct: 222 VPCSMA 227


>tr|A3BH92|A3BH92_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_022414 PE=4 SV=1
          Length = 896

 Score = 33.5 bits (75), Expect = 5.3
 Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
 Frame = +3

Query: 108 EEKRPNSKLSLEI-----FINLDCLLLVI---GFDYVWENWLRSLLS*SQC*GVFFCISY 263
           + K+P   L L+       +N DCL LV+   GFD  W NW++ +L   Q       +  
Sbjct: 411 KRKKPTIILKLDFQKAFDTVNWDCLYLVLHRRGFDDTWINWIKQILETGQA----HVLIN 466

Query: 264 GRTYEESFFQGQLVVGTFP 320
           G T E   F+ + + G  P
Sbjct: 467 GSTGES--FKSKAIAGWIP 483


>tr|Q2JW22|Q2JW22_SYNJA Base excision DNA repair protein, HhH-GPD
           family OS=Synechococcus sp. (strain JA-3-3Ab)
           GN=CYA_0846 PE=4 SV=1
          Length = 222

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = -2

Query: 144 FPDSVSNWVSSLQAPSTSFSHSLRSTRILSALGPEWTALLAASKT 10
           +PD +   V ++ + +T+  +S R+ R L A  P W A+LAA  T
Sbjct: 28  YPDLLDELVGTILSQNTTDHNSSRAFRALKAAFPSWEAVLAADPT 72


>tr|Q2JJR5|Q2JJR5_SYNJB Base excision DNA repair protein, HhH-GPD
           family OS=Synechococcus sp. (strain JA-2-3B'a(2-13))
           GN=CYB_2151 PE=4 SV=1
          Length = 212

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = -2

Query: 141 PDSVSNWVSSLQAPSTSFSHSLRSTRILSALGPEWTALLAASKTD 7
           PD +   V ++ + +T+ ++S R+ R L A  P W A+LAA   D
Sbjct: 21  PDLLDELVGTILSQNTTDANSSRAFRALKAAFPSWEAVLAADPAD 65