BP920273
Clone id YMU001_000135_B01
Library
Length 481
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000135_B01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
AATTTTGGAAAAACTGATGTGCTGGTGACTCTTCAAATTTTTGGGTTGCTAGCAAATGAA
ATTAACCAGGAGGCAGCTATCTCAAGGCTGATGTCTGAGAACATAATGGATGAGAACACT
TTTAGCCAACAGCAAAAGGTGGTGCCAAAAATGGAGACTCTTCAAGGTGCAGGGGCCAAT
ATGGACATGAAGATTCCTGCATTATCTTTCAATGTCTTAGAATGCCAACTAATTACACCA
CTGCACCAGCTTATGTAAGTTTTGAGTAAAATTTAAACCAATCAGGTTATTGAATTCTTT
TACACCATAAATTTGTTAAGTTATAAAGAAGGGAAGCTGCCTACGAGGAAGCCTAACCCG
ATCCCTTACCAAACACGATTTGTGGGTCCTACGGGCCTTCGATTCATCAAAATGATTACA
AGTGTAAAATAATGTCATCAATCTTCACATGCTCCTAATCCTATTAACCTGTTGGTATCA
G
■■Homology search results ■■ -
sp_hit_id A7GG22
Definition sp|A7GG22|EFTS_CLOBL Elongation factor Ts OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F)
Align length 64
Score (bit) 30.8
E-value 3.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920273|Adiantum capillus-veneris mRNA, clone:
YMU001_000135_B01.
(481 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|A7GG22|EFTS_CLOBL Elongation factor Ts OS=Clostridium botulin... 31 3.4
sp|A5I4L2|EFTS_CLOBH Elongation factor Ts OS=Clostridium botulin... 31 3.4
sp|A7FPZ7|EFTS_CLOB1 Elongation factor Ts OS=Clostridium botulin... 31 3.4
sp|P11451|CLCA_PSEPU Chlorocatechol 1,2-dioxygenase OS=Pseudomon... 30 7.5

>sp|A7GG22|EFTS_CLOBL Elongation factor Ts OS=Clostridium botulinum
(strain Langeland / NCTC 10281 / Type F) GN=tsf PE=3
SV=1
Length = 307

Score = 30.8 bits (68), Expect = 3.4
Identities = 17/64 (26%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Frame = +1

Query: 10 KTDVLVTLQIFGLLANEINQEAAISRL-MSENIMDENTFSQQQKVVPKM--ETLQGAGAN 180
+TD + ++F LAN ++++AA S + +E +++E + + K+V + E + G N
Sbjct: 79 ETDFVSVNELFVELANNLSKQAAFSNVSTAEELLEEKYIADESKLVKDVITELIAKLGEN 138

Query: 181 MDMK 192
M+++
Sbjct: 139 MNLR 142


>sp|A5I4L2|EFTS_CLOBH Elongation factor Ts OS=Clostridium botulinum
(strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=tsf
PE=3 SV=1
Length = 307

Score = 30.8 bits (68), Expect = 3.4
Identities = 17/64 (26%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Frame = +1

Query: 10 KTDVLVTLQIFGLLANEINQEAAISRL-MSENIMDENTFSQQQKVVPKM--ETLQGAGAN 180
+TD + ++F LAN ++++AA S + +E +++E + + K+V + E + G N
Sbjct: 79 ETDFVSVNELFVELANNLSKQAAFSNVSTAEELLEEKYIADESKLVKDVITELIAKLGEN 138

Query: 181 MDMK 192
M+++
Sbjct: 139 MNLR 142


>sp|A7FPZ7|EFTS_CLOB1 Elongation factor Ts OS=Clostridium botulinum
(strain ATCC 19397 / Type A) GN=tsf PE=3 SV=1
Length = 307

Score = 30.8 bits (68), Expect = 3.4
Identities = 17/64 (26%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Frame = +1

Query: 10 KTDVLVTLQIFGLLANEINQEAAISRL-MSENIMDENTFSQQQKVVPKM--ETLQGAGAN 180
+TD + ++F LAN ++++AA S + +E +++E + + K+V + E + G N
Sbjct: 79 ETDFVSVNELFVELANNLSKQAAFSNVSTAEELLEEKYIADESKLVKDVITELIAKLGEN 138

Query: 181 MDMK 192
M+++
Sbjct: 139 MNLR 142


>sp|P11451|CLCA_PSEPU Chlorocatechol 1,2-dioxygenase OS=Pseudomonas
putida GN=clcA PE=3 SV=1
Length = 260

Score = 29.6 bits (65), Expect = 7.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1

Query: 298 FYTINLLSYKEGKLPTRKPNPIPYQTRFVGPTG 396
+Y L++ +G R P+PYQ + GPTG
Sbjct: 141 YYRGKLVTDSQGNYRVRTTMPVPYQIPYEGPTG 173


tr_hit_id B3F8C4
Definition tr|B3F8C4|B3F8C4_FRAAN Alpha-L-arabinofuranosidase OS=Fragaria ananassa
Align length 83
Score (bit) 55.8
E-value 1.0e-06
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920273|Adiantum capillus-veneris mRNA, clone:
YMU001_000135_B01.
(481 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B3F8C4|B3F8C4_FRAAN Alpha-L-arabinofuranosidase OS=Fragaria a... 56 1e-06
tr|B3F8C3|B3F8C3_FRAAN Alpha-L-arabinofuranosidase OS=Fragaria a... 56 1e-06
tr|B8LKP3|B8LKP3_PICSI Putative uncharacterized protein OS=Picea... 54 3e-06
tr|A9SR15|A9SR15_PHYPA Predicted protein OS=Physcomitrella paten... 52 2e-05
tr|A9TTS7|A9TTS7_PHYPA Predicted protein OS=Physcomitrella paten... 51 2e-05
tr|B7FGC8|B7FGC8_MEDTR Putative uncharacterized protein OS=Medic... 50 6e-05
tr|Q944F3|Q944F3_SOLLC Arabinosidase ARA-1 OS=Solanum lycopersic... 49 2e-04
tr|A7PTH2|A7PTH2_VITVI Chromosome chr8 scaffold_29, whole genome... 48 2e-04
tr|Q9ATV7|Q9ATV7_HORVU Arabinoxylan arabinofuranohydrolase isoen... 47 4e-04
tr|Q2RAZ7|Q2RAZ7_ORYSJ Alpha-L-arabinofuranosidase C-terminus fa... 46 8e-04
tr|Q1HGK8|Q1HGK8_PRUPE Alpha-L-arabinofuranosidase OS=Prunus per... 46 8e-04
tr|Q0IUV9|Q0IUV9_ORYSJ Os11g0132000 protein OS=Oryza sativa subs... 46 0.001
tr|A3C891|A3C891_ORYSJ Putative uncharacterized protein OS=Oryza... 46 0.001
tr|Q2QY88|Q2QY88_ORYSJ Os12g0128700 protein OS=Oryza sativa subs... 45 0.001
tr|Q2QY82|Q2QY82_ORYSJ Arabinoxylan arabinofuranohydrolase isoen... 45 0.001
tr|B8BLU8|B8BLU8_ORYSI Putative uncharacterized protein OS=Oryza... 45 0.001
tr|B8BIW7|B8BIW7_ORYSI Putative uncharacterized protein OS=Oryza... 45 0.001
tr|B8BIW4|B8BIW4_ORYSI Putative uncharacterized protein OS=Oryza... 45 0.001
tr|Q7X9G7|Q7X9G7_MALDO Alpha-L-arabinofuranosidase OS=Malus dome... 45 0.002
tr|Q76LU4|Q76LU4_SOLLC Alpha-L-arabinofuranosidase OS=Solanum ly... 45 0.002
tr|A0ZNJ6|A0ZNJ6_PYRCO Alpha-Arabinosidase1 OS=Pyrus communis GN... 45 0.002
tr|B2BMP6|B2BMP6_PRUPE Alpha-L-arabinofuranosidase protein OS=Pr... 45 0.002
tr|A3CEL7|A3CEL7_ORYSJ Putative uncharacterized protein OS=Oryza... 45 0.002
tr|Q2QY87|Q2QY87_ORYSJ cDNA clone:J033138B08, full insert sequen... 44 0.003
tr|Q0IQD3|Q0IQD3_ORYSJ Os12g0128800 protein (Fragment) OS=Oryza ... 44 0.003
tr|B6T9B9|B6T9B9_MAIZE Alpha-N-arabinofuranosidase A OS=Zea mays... 44 0.004
tr|Q2RAZ2|Q2RAZ2_ORYSJ Alpha-L-arabinofuranosidase C-terminus fa... 44 0.005
tr|B8BIX0|B8BIX0_ORYSI Putative uncharacterized protein OS=Oryza... 44 0.005
tr|A3C895|A3C895_ORYSJ Putative uncharacterized protein OS=Oryza... 44 0.005
tr|Q76LU3|Q76LU3_PYRPY Alpha-L-arabinofuranosidase OS=Pyrus pyri... 43 0.009

>tr|B3F8C4|B3F8C4_FRAAN Alpha-L-arabinofuranosidase OS=Fragaria
ananassa GN=Ara2 PE=2 SV=1
Length = 665

Score = 55.8 bits (133), Expect = 1e-06
Identities = 28/83 (33%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Frame = +1

Query: 1 NFGKTDVLVTLQIFGLLANEINQEAAISRLM-SENIMDENTFSQQQKVVPKMETLQGAGA 177
NFG V + +++ GL N ++ + ++ S+N+MDEN+F + +KV+P + L+ AG
Sbjct: 571 NFGSNIVNLRIRVDGLEPNSVSMSGSTKTVLTSKNVMDENSFDEPKKVIPNLGLLENAGE 630

Query: 178 NMDMKIPALSFNVLECQLITPLH 246
MD+ + A SF ++ L+ P H
Sbjct: 631 EMDVGLSAHSFTSIDL-LVEPSH 652


>tr|B3F8C3|B3F8C3_FRAAN Alpha-L-arabinofuranosidase OS=Fragaria
ananassa GN=Ara1 PE=2 SV=1
Length = 663

Score = 55.8 bits (133), Expect = 1e-06
Identities = 28/83 (33%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Frame = +1

Query: 1 NFGKTDVLVTLQIFGLLANEINQEAAISRLM-SENIMDENTFSQQQKVVPKMETLQGAGA 177
NFG V + +++ GL N ++ + ++ S+N+MDEN+F + +KV+P + L+ AG
Sbjct: 569 NFGSNIVNLRIRVDGLEPNSVSMSGSTKTVLTSKNVMDENSFDEPKKVIPNLGLLENAGE 628

Query: 178 NMDMKIPALSFNVLECQLITPLH 246
MD+ + A SF ++ L+ P H
Sbjct: 629 EMDVGLSAHSFTSIDL-LVEPSH 650


>tr|B8LKP3|B8LKP3_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 662

Score = 54.3 bits (129), Expect = 3e-06
Identities = 27/83 (32%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Frame = +1

Query: 1 NFGKTDVLVTLQIFGLLANEINQEAA-ISRLMSENIMDENTFSQQQKVVPKMETLQGAGA 177
NFG + + + + I GL I+ + I+ L S+N+MDEN+F + +K+VP+ + +G
Sbjct: 577 NFGSSLLTLDISISGLPVGSISSSGSKITVLTSDNLMDENSFDKPEKIVPRATEIGNSGT 636

Query: 178 NMDMKIPALSFNVLECQLITPLH 246
+M++ +P S VL+ +L +H
Sbjct: 637 DMNISLPPHSVTVLDLRLDHAMH 659


>tr|A9SR15|A9SR15_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_232568 PE=4 SV=1
Length = 634

Score = 51.6 bits (122), Expect = 2e-05
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Frame = +1

Query: 1 NFGKTDVLVTLQIFGLLANEINQ-EAAISRLMSENIMDENTFSQQQKVVPKMETLQGAGA 177
N+G + + L++ G+ AN N E+ I L S +MDEN+F+ KV P++ AG
Sbjct: 536 NYGSNPLNLNLEVSGVSANRFNATESYIMLLTSAGLMDENSFTNPAKVTPQVTKATNAGP 595

Query: 178 NMDMKIPALSFNVLECQLIT 237
+M++ +PA S L+ L T
Sbjct: 596 SMEVALPAYSILALQLGLNT 615


>tr|A9TTS7|A9TTS7_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_150483 PE=4 SV=1
Length = 679

Score = 51.2 bits (121), Expect = 2e-05
Identities = 26/79 (32%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Frame = +1

Query: 1 NFGKTDVLVTLQIFGLLANEI-NQEAAISRLMSENIMDENTFSQQQKVVPKMETLQGAGA 177
NFG + + +++ + G+ AN + ++ I+ + S +MDEN+F+ +KVVP++ + A
Sbjct: 576 NFGSSALNLSIAVSGISANNVVAADSHITVMTSGAVMDENSFTNPKKVVPQVSQAENAAP 635

Query: 178 NMDMKIPALSFNVLECQLI 234
NM + +PA S LE L+
Sbjct: 636 NMQILLPAHSITALELGLL 654


>tr|B7FGC8|B7FGC8_MEDTR Putative uncharacterized protein OS=Medicago
truncatula PE=2 SV=1
Length = 179

Score = 50.1 bits (118), Expect = 6e-05
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Frame = +1

Query: 1 NFGKTDVLVTLQIFGLLANEINQEAAISRLM-SENIMDENTFSQQQKVVPKMETLQGAGA 177
NFG + V + + GL N + + ++ S N+MDEN+FSQ +KV+P LQ G
Sbjct: 84 NFGTSAVNLKISFNGLDPNSLQSSGSTKTVLTSTNLMDENSFSQPKKVIPIQSLLQSVGK 143

Query: 178 NMDMKIPALSF 210
+M++ +P SF
Sbjct: 144 DMNVIVPPHSF 154


>tr|Q944F3|Q944F3_SOLLC Arabinosidase ARA-1 OS=Solanum lycopersicum
PE=2 SV=1
Length = 674

Score = 48.5 bits (114), Expect = 2e-04
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Frame = +1

Query: 1 NFGKTDVLVTLQIFGLLANEINQ--EAAISRLMSENIMDENTFSQQQKVVPKMETLQGAG 174
NFG T V+ + + GL N + A ++ L S N+MDEN+F + KV+P ++
Sbjct: 578 NFGTTAVITKISLTGLGQNSLETLFGAVMTELTSNNVMDENSFREPNKVIPVKTQVEKVS 637

Query: 175 ANMDMKIPALSFNVLE 222
NMD+ + S N ++
Sbjct: 638 DNMDVVLAPRSLNSID 653


>tr|A7PTH2|A7PTH2_VITVI Chromosome chr8 scaffold_29, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00023356001
PE=4 SV=1
Length = 676

Score = 48.1 bits (113), Expect = 2e-04
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = +1

Query: 1 NFGKTDVLVTLQIFGLLANEINQEAAISRLM-SENIMDENTFSQQQKVVPKMETLQGAGA 177
NF V + + + GL N + A ++ S N+MDEN+F + KV P L+ G
Sbjct: 581 NFRNVSVSLKISVDGLQTNSLQLSGATKTVLTSSNVMDENSFKEPTKVAPFRFELKDVGK 640

Query: 178 NMDMKIPALSFNVLE 222
++D ++PA SF +
Sbjct: 641 DLDAELPAYSFTAFD 655


>tr|Q9ATV7|Q9ATV7_HORVU Arabinoxylan arabinofuranohydrolase
isoenzyme AXAH-II OS=Hordeum vulgare PE=2 SV=1
Length = 656

Score = 47.4 bits (111), Expect = 4e-04
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Frame = +1

Query: 1 NFGKTDVLVTLQIFGLLA--NEINQEAAISRLMSENIMDENTFSQQQKVVPKMETLQGAG 174
NFG V +T+ + GL A N + A + L S N+ DEN+FS KVVP L A
Sbjct: 571 NFGSDTVSLTISVSGLQASINALGSNATV--LTSSNVKDENSFSNPTKVVPVTSQLHNAA 628

Query: 175 ANMDMKIPALSFNVLECQL 231
M + + A SF+ + L
Sbjct: 629 EQMQVTLAAHSFSSFDLAL 647


>tr|Q2RAZ7|Q2RAZ7_ORYSJ Alpha-L-arabinofuranosidase C-terminus
family protein, expressed OS=Oryza sativa subsp.
japonica GN=Os11g0131900 PE=2 SV=2
Length = 658

Score = 46.2 bits (108), Expect = 8e-04
Identities = 27/77 (35%), Positives = 37/77 (48%)
Frame = +1

Query: 1 NFGKTDVLVTLQIFGLLANEINQEAAISRLMSENIMDENTFSQQQKVVPKMETLQGAGAN 180
NFG V +T+ GL A + + L S N+MDEN+FS KVVP L A
Sbjct: 573 NFGSDPVSLTISATGLQARVNALGSTATVLTSSNVMDENSFSNPNKVVPVKSQLSNAAEQ 632

Query: 181 MDMKIPALSFNVLECQL 231
M + + SF+ + L
Sbjct: 633 MQVTLAPHSFSSFDLAL 649