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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920274
Clone id YMU001_000135_B02
Library
Length 521
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000135_B02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TACAAATTGAATTACACATGTTGCAAATGAGCAACTACACAAGGCTCTCCATGTACATGA
CTACAGTGATAGACTTGAAGGGCAACAGAATTCTTCCAATGCCCAATCTTCGCTTTCTGT
TTAAAAAGAACGGGGGGGGGAGGCTACAAGACCTTGCAAGGCACACTCATCATGGTGCGT
TTGAGAGGGCTAACGTAGCTCCAAGCACAGGCAGCCTTGGTCCATGAGGAGTGGCTCCCA
ACTCTTCAAGGTTGTTCTCTGATGACCGGCCTAACACATTAAGCAATCTCATCCTTTGCA
ACTCTTTCCCTTCTTCTAAAGAAAGATGTATGGCCCTTGTCTCAAGCTCAACAGCATATC
CACTCCTTGCTGCGGTCGAGAGTGACCTCAATCCTTGAAGCCGATCAGTCTGATCTGCTT
CATCACACTGCTTTAAGAAGGCCTGCAAGTTTCTGAAGCGCTGTTGAAAAGGCAGCATAA
TTGCTGCGTCTGTGTTTCCTGTTGGTGTAGCCGAAAGCGCA
■■Homology search results ■■ -
sp_hit_id Q6X4M3
Definition sp|Q6X4M3|LIN52_ONCMY Protein lin-52 homolog OS=Oncorhynchus mykiss
Align length 52
Score (bit) 33.5
E-value 0.62
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920274|Adiantum capillus-veneris mRNA, clone:
YMU001_000135_B02.
         (521 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6X4M3|LIN52_ONCMY Protein lin-52 homolog OS=Oncorhynchus myk...    33   0.62 
sp|A0AUQ6|LIN52_DANRE Protein lin-52 homolog OS=Danio rerio GN=l...    33   0.62 
sp|Q12218|TIR4_YEAST Cell wall protein TIR4 OS=Saccharomyces cer...    32   2.4  
sp|A8AVU3|RECU_STRGC Holliday junction resolvase recU OS=Strepto...    32   2.4  
sp|Q4RLT3|LIN52_TETNG Protein lin-52 homolog OS=Tetraodon nigrov...    32   2.4  
sp|Q7PK92|LRC50_ANOGA Leucine-rich repeat-containing protein 50 ...    31   4.0  
sp|Q5ABX0|ATM_CANAL Serine/threonine-protein kinase TEL1 OS=Cand...    31   4.0  
sp|A6YP92|ARX_RAT Homeobox protein ARX OS=Rattus norvegicus GN=A...    30   6.9  

>sp|Q6X4M3|LIN52_ONCMY Protein lin-52 homolog OS=Oncorhynchus mykiss
           GN=lin52 PE=2 SV=1
          Length = 112

 Score = 33.5 bits (75), Expect = 0.62
 Identities = 19/52 (36%), Positives = 29/52 (55%)
 Frame = -2

Query: 421 EADQTDRLQGLRSLSTAARSGYAVELETRAIHLSLEEGKELQRMRLLNVLGR 266
           E++  + L+ L SL+TA        L+  A  L LEE +E+ R + LN+L R
Sbjct: 58  ESEDIEMLKKLGSLTTANLMEKVKGLQNLAYQLGLEESREMTRGKFLNILER 109


>sp|A0AUQ6|LIN52_DANRE Protein lin-52 homolog OS=Danio rerio
           GN=lin52 PE=3 SV=1
          Length = 112

 Score = 33.5 bits (75), Expect = 0.62
 Identities = 19/52 (36%), Positives = 29/52 (55%)
 Frame = -2

Query: 421 EADQTDRLQGLRSLSTAARSGYAVELETRAIHLSLEEGKELQRMRLLNVLGR 266
           E++  + L+ L SL+TA        L+  A  L LEE +E+ R + LN+L R
Sbjct: 58  ESEDIEMLKELGSLTTANLMEKVKGLQNLAYQLGLEESREMTRGKFLNILER 109


>sp|Q12218|TIR4_YEAST Cell wall protein TIR4 OS=Saccharomyces
           cerevisiae GN=TIR4 PE=1 SV=1
          Length = 487

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 19/56 (33%), Positives = 32/56 (57%)
 Frame = +3

Query: 189 ANVAPSTGSLGP*GVAPNSSRLFSDDRPNTLSNLILCNSFPSSKERCMALVSSSTA 356
           ++VAPS+  +    VAP+SS + S    ++ S +   +  PSS E   + V+SST+
Sbjct: 210 SSVAPSSSEVVSSSVAPSSSEVVSSSVASSSSEVASSSVAPSSSEVVSSSVASSTS 265



 Score = 30.0 bits (66), Expect = 6.9
 Identities = 18/56 (32%), Positives = 32/56 (57%)
 Frame = +3

Query: 189 ANVAPSTGSLGP*GVAPNSSRLFSDDRPNTLSNLILCNSFPSSKERCMALVSSSTA 356
           ++VAPS+  +    VAP+SS + S    ++ S +   +  PSS E   + V+SS++
Sbjct: 150 SSVAPSSSEVVSSSVAPSSSEVVSSSVASSSSEVASSSVAPSSSEVVSSSVASSSS 205


>sp|A8AVU3|RECU_STRGC Holliday junction resolvase recU
           OS=Streptococcus gordonii (strain Challis / ATCC 35105 /
           CH1 / DL1 / V288) GN=recU PE=3 SV=1
          Length = 200

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 22/68 (32%), Positives = 30/68 (44%)
 Frame = +3

Query: 3   QIELHMLQMSNYTRLSMYMTTVIDLKGNRILPMPNLRFLFKKNGGGRLQDLARHTHHGAF 182
           QIE HM Q+ N   +   +     LK   +LP P L   +K + GG+   L     HG  
Sbjct: 116 QIE-HMNQVLNQGGICFVLLHFSSLKETYLLPAPYLIEFYKIDKGGKSMPLDYIQKHGYL 174

Query: 183 ERANVAPS 206
              N+ PS
Sbjct: 175 IEQNILPS 182


>sp|Q4RLT3|LIN52_TETNG Protein lin-52 homolog OS=Tetraodon
           nigroviridis GN=lin52 PE=3 SV=1
          Length = 112

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 18/50 (36%), Positives = 28/50 (56%)
 Frame = -2

Query: 421 EADQTDRLQGLRSLSTAARSGYAVELETRAIHLSLEEGKELQRMRLLNVL 272
           E++  + L+ L SL+TA        L+  A  L LEE +E+ R + LN+L
Sbjct: 58  ESEDYEMLKELGSLTTANLMEKVRGLQNLAYQLGLEESREMTRGKFLNIL 107


>sp|Q7PK92|LRC50_ANOGA Leucine-rich repeat-containing protein 50
           homolog OS=Anopheles gambiae GN=AGAP009594 PE=3 SV=2
          Length = 910

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
 Frame = -2

Query: 505 PTGNTDAAIMLPFQQRFRNLQAFLKQCDEADQTDRL---QGLRSLSTAARSGYAVELETR 335
           P+   DA    P  + F +   + K  D   + D+L   Q   +LS AAR     ELET+
Sbjct: 667 PSDPKDATTSKPIPEEFGSDPVYRKFIDIQYEIDKLTEDQIFTALSEAARELQEEELETK 726

Query: 334 AIHLSLEE 311
            +H +++E
Sbjct: 727 LVHDAIDE 734


>sp|Q5ABX0|ATM_CANAL Serine/threonine-protein kinase TEL1 OS=Candida
            albicans GN=TEL1 PE=3 SV=1
          Length = 2873

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = -2

Query: 415  DQTDRLQGLRSLSTAARSGYAVELETRAIHLSLEE-GKELQRMRLLNVLGRSSENNLEEL 239
            DQ   +  L   S A   G AVE+E+  I L LEE G +  +  +L  + R   N +   
Sbjct: 1495 DQDRAICQLLKSSVAILKGQAVEIESSLIELCLEESGPDYIKQMIL--ISRIFGNVV--F 1550

Query: 238  GATPHGPRLPVLGATLALS 182
              T  G +LPV+   LALS
Sbjct: 1551 ATTHSGSKLPVVEKLLALS 1569


>sp|A6YP92|ARX_RAT Homeobox protein ARX OS=Rattus norvegicus GN=Arx
           PE=2 SV=1
          Length = 566

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 18/46 (39%), Positives = 21/46 (45%)
 Frame = +3

Query: 102 PNLRFLFKKNGGGRLQDLARHTHHGAFERANVAPSTGSLGP*GVAP 239
           P LR L+   GG  LQ  A      A   A  A +TG+ GP G  P
Sbjct: 83  PKLRRLYGPGGGRLLQGAAAAAAAAAAAAAAAATATGTAGPRGEVP 128
tr_hit_id A9TQY1
Definition tr|A9TQY1|A9TQY1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 87
Score (bit) 90.5
E-value 4.0e-17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920274|Adiantum capillus-veneris mRNA, clone:
YMU001_000135_B02.
         (521 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TQY1|A9TQY1_PHYPA Predicted protein OS=Physcomitrella paten...    91   4e-17
tr|B4FN32|B4FN32_MAIZE Putative uncharacterized protein OS=Zea m...    84   5e-15
tr|Q7XRN0|Q7XRN0_ORYSJ Os04g0136900 protein OS=Oryza sativa subs...    80   8e-14
tr|Q01N17|Q01N17_ORYSA OSIGBa0147B06.6 protein OS=Oryza sativa G...    80   8e-14
tr|A9PBG4|A9PBG4_POPTR Putative uncharacterized protein OS=Popul...    80   8e-14
tr|A2XQ05|A2XQ05_ORYSI Putative uncharacterized protein OS=Oryza...    80   8e-14
tr|B7FJV8|B7FJV8_MEDTR Putative uncharacterized protein OS=Medic...    77   5e-13
tr|A7R124|A7R124_VITVI Chromosome undetermined scaffold_334, who...    74   3e-12
tr|Q69NI5|Q69NI5_ORYSJ Os09g0549400 protein OS=Oryza sativa subs...    72   1e-11
tr|A2Z3S6|A2Z3S6_ORYSI Putative uncharacterized protein OS=Oryza...    72   1e-11
tr|A5C7C8|A5C7C8_VITVI Putative uncharacterized protein OS=Vitis...    71   3e-11
tr|Q67Y92|Q67Y92_ARATH Putative uncharacterized protein At4g3828...    71   4e-11
tr|Q0WNL0|Q0WNL0_ARATH Putative uncharacterized protein At2g4525...    70   6e-11
tr|B6U5K1|B6U5K1_MAIZE Putative uncharacterized protein OS=Zea m...    70   6e-11
tr|B6SYL9|B6SYL9_MAIZE Putative uncharacterized protein OS=Zea m...    70   6e-11
tr|Q8L6Z3|Q8L6Z3_ARATH Putative uncharacterized protein At4g3829...    69   1e-10
tr|A7P8Q0|A7P8Q0_VITVI Chromosome chr3 scaffold_8, whole genome ...    66   1e-09
tr|O22147|O22147_ARATH Putative uncharacterized protein At2g4525...    64   3e-09
tr|A3AQJ6|A3AQJ6_ORYSJ Putative uncharacterized protein OS=Oryza...    53   8e-06
tr|Q9SVF7|Q9SVF7_ARATH Putative uncharacterized protein F22I13.5...    53   1e-05
tr|A8MRU4|A8MRU4_ARATH Uncharacterized protein At2g45250.2 OS=Ar...    50   5e-05
tr|A5C074|A5C074_VITVI Putative uncharacterized protein OS=Vitis...    49   1e-04
tr|B4FXW3|B4FXW3_MAIZE Putative uncharacterized protein OS=Zea m...    45   0.003
tr|A7NSW2|A7NSW2_VITVI Chromosome chr18 scaffold_1, whole genome...    44   0.005
tr|Q0BDY8|Q0BDY8_BURCM DEAD/DEAH box helicase domain protein OS=...    38   0.34 
tr|B1YSJ4|B1YSJ4_BURA4 DEAD/DEAH box helicase domain protein OS=...    38   0.34 
tr|Q82IA6|Q82IA6_STRAW Putative uncharacterized protein OS=Strep...    37   0.59 
tr|Q1BHL0|Q1BHL0_BURCA DEAD/DEAH box helicase-like OS=Burkholder...    36   1.3  
tr|B1JUH7|B1JUH7_BURCC DEAD/DEAH box helicase domain protein OS=...    36   1.3  
tr|A0K8H1|A0K8H1_BURCH DEAD/DEAH box helicase domain protein OS=...    36   1.3  

>tr|A9TQY1|A9TQY1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_171440 PE=4 SV=1
          Length = 817

 Score = 90.5 bits (223), Expect = 4e-17
 Identities = 46/87 (52%), Positives = 61/87 (70%), Gaps = 1/87 (1%)
 Frame = -2

Query: 466 QQRFRNLQAFLKQCDEADQTDRLQGLRSLSTAARSGYAVELETRAIHLSLEEGKELQRMR 287
           + RF  LQ FLK+CD+ DQ+  L  LR LS AARS  AVELE RA+ LS+EEGKE+ R++
Sbjct: 688 KDRFVQLQLFLKKCDDDDQSYLLDALRQLSAAARSSCAVELEQRALRLSIEEGKEMARLK 747

Query: 286 LLNVLGRSSENNLE-ELGATPHGPRLP 209
            LNV+G+ +    + E+G T  GPR+P
Sbjct: 748 SLNVMGQKTNTKAQNEIGCTSQGPRVP 774


>tr|B4FN32|B4FN32_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 216

 Score = 83.6 bits (205), Expect = 5e-15
 Identities = 42/77 (54%), Positives = 55/77 (71%)
 Frame = -2

Query: 469 FQQRFRNLQAFLKQCDEADQTDRLQGLRSLSTAARSGYAVELETRAIHLSLEEGKELQRM 290
           + +RF  LQ +L+ CD + Q   L+ LRSLS A R+ +A+ELE RAIHL +EEGKELQRM
Sbjct: 135 WNERFNRLQTYLENCDHSTQEGYLRKLRSLSAAGRNMHAIELEKRAIHLLMEEGKELQRM 194

Query: 289 RLLNVLGRSSENNLEEL 239
           + LNVLG+ S N   +L
Sbjct: 195 KALNVLGKVSPNASSKL 211


>tr|Q7XRN0|Q7XRN0_ORYSJ Os04g0136900 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0095E20.6 PE=4 SV=2
          Length = 354

 Score = 79.7 bits (195), Expect = 8e-14
 Identities = 40/69 (57%), Positives = 51/69 (73%)
 Frame = -2

Query: 460 RFRNLQAFLKQCDEADQTDRLQGLRSLSTAARSGYAVELETRAIHLSLEEGKELQRMRLL 281
           RF  LQ +L+ CD + Q   ++ LRSLS A RS +A++LE RAIHL +EEGKELQRM+ L
Sbjct: 278 RFNRLQTYLESCDRSTQEGYMRMLRSLSAADRSMHAIDLEKRAIHLLVEEGKELQRMKAL 337

Query: 280 NVLGRSSEN 254
           NVLG+ S N
Sbjct: 338 NVLGKVSPN 346


>tr|Q01N17|Q01N17_ORYSA OSIGBa0147B06.6 protein OS=Oryza sativa
           GN=OSIGBa0147B06.6 PE=4 SV=1
          Length = 386

 Score = 79.7 bits (195), Expect = 8e-14
 Identities = 40/69 (57%), Positives = 51/69 (73%)
 Frame = -2

Query: 460 RFRNLQAFLKQCDEADQTDRLQGLRSLSTAARSGYAVELETRAIHLSLEEGKELQRMRLL 281
           RF  LQ +L+ CD + Q   ++ LRSLS A RS +A++LE RAIHL +EEGKELQRM+ L
Sbjct: 310 RFNRLQTYLESCDRSTQEGYMRMLRSLSAADRSMHAIDLEKRAIHLLVEEGKELQRMKAL 369

Query: 280 NVLGRSSEN 254
           NVLG+ S N
Sbjct: 370 NVLGKVSPN 378


>tr|A9PBG4|A9PBG4_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 278

 Score = 79.7 bits (195), Expect = 8e-14
 Identities = 42/87 (48%), Positives = 60/87 (68%)
 Frame = -2

Query: 514 SATPTGNTDAAIMLPFQQRFRNLQAFLKQCDEADQTDRLQGLRSLSTAARSGYAVELETR 335
           S  P+ N  A   + +++R+  LQ  LK+ DE+DQ +  Q LRS+S+   S +A+ELE R
Sbjct: 179 STAPSSNPMAEKNMHWEERYCQLQILLKKLDESDQEEYAQKLRSVSSIELSRHAIELEKR 238

Query: 334 AIHLSLEEGKELQRMRLLNVLGRSSEN 254
           +I LSLEE KELQR+ +LNVLG+S +N
Sbjct: 239 SIQLSLEEAKELQRVTILNVLGKSLKN 265


>tr|A2XQ05|A2XQ05_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_14718 PE=4 SV=1
          Length = 434

 Score = 79.7 bits (195), Expect = 8e-14
 Identities = 40/69 (57%), Positives = 51/69 (73%)
 Frame = -2

Query: 460 RFRNLQAFLKQCDEADQTDRLQGLRSLSTAARSGYAVELETRAIHLSLEEGKELQRMRLL 281
           RF  LQ +L+ CD + Q   ++ LRSLS A RS +A++LE RAIHL +EEGKELQRM+ L
Sbjct: 358 RFNRLQTYLESCDRSTQEGYMRMLRSLSAADRSMHAIDLEKRAIHLLVEEGKELQRMKAL 417

Query: 280 NVLGRSSEN 254
           NVLG+ S N
Sbjct: 418 NVLGKVSPN 426


>tr|B7FJV8|B7FJV8_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 299

 Score = 77.0 bits (188), Expect = 5e-13
 Identities = 40/89 (44%), Positives = 63/89 (70%)
 Frame = -2

Query: 520 ALSATPTGNTDAAIMLPFQQRFRNLQAFLKQCDEADQTDRLQGLRSLSTAARSGYAVELE 341
           A S    GN      + +++++++LQ  L++ D++DQ + +Q L+SLS+   S +AVELE
Sbjct: 193 ASSGHTIGNPKVFKNVHWEEQYQHLQMLLRKLDQSDQAEYIQMLQSLSSVELSRHAVELE 252

Query: 340 TRAIHLSLEEGKELQRMRLLNVLGRSSEN 254
            R+I LSLEE KELQR+ +LNVLG+S++N
Sbjct: 253 KRSIQLSLEEAKELQRVAVLNVLGKSAKN 281


>tr|A7R124|A7R124_VITVI Chromosome undetermined scaffold_334, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00011746001 PE=4 SV=1
          Length = 250

 Score = 74.3 bits (181), Expect = 3e-12
 Identities = 38/83 (45%), Positives = 56/83 (67%)
 Frame = -2

Query: 496 NTDAAIMLPFQQRFRNLQAFLKQCDEADQTDRLQGLRSLSTAARSGYAVELETRAIHLSL 317
           N+     + + +R   L+A+LK CD ++Q   +Q LRS ++A RS +AVELE RAI L L
Sbjct: 156 NSQDVANMHWGERLIQLEAYLKDCDHSNQEAYVQKLRSFTSAERSRHAVELEKRAIRLFL 215

Query: 316 EEGKELQRMRLLNVLGRSSENNL 248
           EEG+EL+R++ LNVLG+    N+
Sbjct: 216 EEGRELERIKALNVLGKYDTKNV 238


>tr|Q69NI5|Q69NI5_ORYSJ Os09g0549400 protein OS=Oryza sativa subsp.
           japonica GN=OJ1210_A07.18 PE=2 SV=1
          Length = 425

 Score = 72.4 bits (176), Expect = 1e-11
 Identities = 38/85 (44%), Positives = 56/85 (65%)
 Frame = -2

Query: 469 FQQRFRNLQAFLKQCDEADQTDRLQGLRSLSTAARSGYAVELETRAIHLSLEEGKELQRM 290
           +++RF  LQAFL+  +++ Q + +  LRSLS+  RS  A+ELE RA+ L +EEGKELQ+M
Sbjct: 334 WKERFIRLQAFLRNNEQSGQEEYIHMLRSLSSVGRSKLAIELENRAVKLLIEEGKELQKM 393

Query: 289 RLLNVLGRSSENNLEELGATPHGPR 215
           ++LNVL + S  +   L   P   R
Sbjct: 394 KVLNVLNKLSPTDALPLPTQPASVR 418


>tr|A2Z3S6|A2Z3S6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_32290 PE=4 SV=1
          Length = 424

 Score = 72.4 bits (176), Expect = 1e-11
 Identities = 38/85 (44%), Positives = 56/85 (65%)
 Frame = -2

Query: 469 FQQRFRNLQAFLKQCDEADQTDRLQGLRSLSTAARSGYAVELETRAIHLSLEEGKELQRM 290
           +++RF  LQAFL+  +++ Q + +  LRSLS+  RS  A+ELE RA+ L +EEGKELQ+M
Sbjct: 333 WKERFIRLQAFLRNNEQSGQEEYIHMLRSLSSVGRSKLAIELENRAVKLLIEEGKELQKM 392

Query: 289 RLLNVLGRSSENNLEELGATPHGPR 215
           ++LNVL + S  +   L   P   R
Sbjct: 393 KVLNVLNKLSPTDALPLPTQPASVR 417