BP920280 |
Clone id |
YMU001_000135_B10 |
Library |
YMU01 |
Length |
465 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000135_B10. |
Accession |
BP920280 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
ATGGTGTCAATCTGGGTCCAAAGGTCTCAAAACGCCATAATCTTGCCATGATTTTCACTT GTACAGTCTGCCAAACACGGTCTGCCAAAACAATGAGTAGAGAAACATATGAGAAAGGAG TTGTCACTGCTCGCTGTGGGGGATGCAAGAACTTGCATCTTATTGCAGATAGGCTAGGCT GGTTCGGGGAGCCTGGTAGCGTGGAGGATTTCCTAAATCAGAAGGGTGTGGAGATAAGGA AAGGTACAGAAGAAAGCTATGAATTCTCAGTGGAAGATCTTGCTGGTTGGAGTCCGCCAA GTAAGGAGTAAGTGCACTCTTTACATTCTACAACTTCTGTAAAGGTGCGGTTCTTTGGTG GTGTCTAGAAGCCCATTGAGATGCTCTCTGTGAAGTCCCAGGGGGTGCCTCTTTGACTTG ATACCCTCCAGCTCTTCTAGGCTGCATTTATTATAATGTGATGCG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q0IH40 |
Definition |
sp|Q0IH40|DNLZ_XENLA DNL-type zinc finger protein OS=Xenopus laevis |
Align length |
68 |
Score (bit) |
75.5 |
E-value |
1.0e-13 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP920280|Adiantum capillus-veneris mRNA, clone: YMU001_000135_B10. (465 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q0IH40|DNLZ_XENLA DNL-type zinc finger protein OS=Xenopus lae... 75 1e-13 sp|A1L1P7|DNLZ_DANRE DNL-type zinc finger protein OS=Danio rerio... 69 1e-11 sp|Q5SXM8|DNLZ_HUMAN DNL-type zinc finger protein OS=Homo sapien... 69 1e-11 sp|Q9D113|DNLZ_MOUSE DNL-type zinc finger protein OS=Mus musculu... 68 2e-11 sp|Q09759|YA72_SCHPO Uncharacterized protein C24H6.02c OS=Schizo... 64 3e-10 sp|P42844|ZIM17_YEAST Mitochondrial protein import protein ZIM17... 58 2e-08 sp|Q9UKN1|MUC12_HUMAN Mucin-12 OS=Homo sapiens GN=MUC12 PE=1 SV=2 32 1.0 sp|Q12128|BAG7_YEAST Rho-GTPase-activating protein BAG7 OS=Sacch... 31 2.3 sp|Q6P4L9|NFRKB_XENTR Nuclear factor related to kappa-B-binding ... 30 5.1 sp|P14133|ASO_CUCSA L-ascorbate oxidase OS=Cucumis sativus PE=1 ... 30 5.1 sp|P74902|VATC_THET8 V-type ATP synthase subunit C OS=Thermus th... 30 6.7 sp|Q72J70|VATC_THET2 V-type ATP synthase subunit C OS=Thermus th... 29 8.7 sp|P22265|TSH_DROME Protein teashirt OS=Drosophila melanogaster ... 29 8.7
>sp|Q0IH40|DNLZ_XENLA DNL-type zinc finger protein OS=Xenopus laevis GN=dnlz PE=2 SV=1 Length = 188
Score = 75.5 bits (184), Expect = 1e-13 Identities = 33/68 (48%), Positives = 48/68 (70%), Gaps = 3/68 (4%) Frame = +3
Query: 48 MIFTCTVCQTRSAKTMSRETYEKGVVTARCGGCKNLHLIADRLGWFGE---PGSVEDFLN 218 +I+TC VC TRS+KT+S+ Y KGVV RC GC+N H+IAD LGWF + ++E+ L Sbjct: 84 LIYTCKVCATRSSKTISKVAYHKGVVIVRCPGCENHHIIADNLGWFSDLEGRRNIEEILA 143
Query: 219 QKGVEIRK 242 KG ++++ Sbjct: 144 AKGEQVQR 151
>sp|A1L1P7|DNLZ_DANRE DNL-type zinc finger protein OS=Danio rerio GN=dnlz PE=2 SV=1 Length = 183
Score = 68.9 bits (167), Expect = 1e-11 Identities = 31/68 (45%), Positives = 43/68 (63%), Gaps = 3/68 (4%) Frame = +3
Query: 48 MIFTCTVCQTRSAKTMSRETYEKGVVTARCGGCKNLHLIADRLGWFGE---PGSVEDFLN 218 +++TC VC TRS K +S+ Y KGVV C GCKN H+IAD L WF + ++E+ L Sbjct: 83 LVYTCKVCSTRSMKKISKLAYHKGVVIVTCPGCKNHHVIADNLKWFSDLEGKRNIEEILA 142
Query: 219 QKGVEIRK 242 KG +R+ Sbjct: 143 AKGESVRR 150
>sp|Q5SXM8|DNLZ_HUMAN DNL-type zinc finger protein OS=Homo sapiens GN=DNLZ PE=2 SV=1 Length = 178
Score = 68.6 bits (166), Expect = 1e-11 Identities = 32/83 (38%), Positives = 50/83 (60%), Gaps = 3/83 (3%) Frame = +3
Query: 48 MIFTCTVCQTRSAKTMSRETYEKGVVTARCGGCKNLHLIADRLGWFGE---PGSVEDFLN 218 +++TC VC TRS+K +S+ Y +GVV C GC+N H+IAD LGWF + ++E+ L Sbjct: 71 LVYTCKVCGTRSSKRISKLAYHQGVVIVTCPGCQNHHIIADNLGWFSDLNGKRNIEEILT 130
Query: 219 QKGVEIRKGTEESYEFSVEDLAG 287 +G ++ + E V + AG Sbjct: 131 ARGEQVHRVAGEGALELVLEAAG 153
>sp|Q9D113|DNLZ_MOUSE DNL-type zinc finger protein OS=Mus musculus GN=Dnlz PE=2 SV=1 Length = 177
Score = 67.8 bits (164), Expect = 2e-11 Identities = 29/68 (42%), Positives = 45/68 (66%), Gaps = 3/68 (4%) Frame = +3
Query: 48 MIFTCTVCQTRSAKTMSRETYEKGVVTARCGGCKNLHLIADRLGWFGE---PGSVEDFLN 218 +++TC VC TRS+K +S+ Y +GVV C GC+N H+IAD L WF + ++E+ L Sbjct: 75 LVYTCKVCGTRSSKRISKLAYHQGVVIVTCPGCQNHHIIADNLSWFSDLKGKRNIEEILA 134
Query: 219 QKGVEIRK 242 +G E+R+ Sbjct: 135 ARGEEVRR 142
>sp|Q09759|YA72_SCHPO Uncharacterized protein C24H6.02c OS=Schizosaccharomyces pombe GN=SPAC24H6.02c PE=2 SV=1 Length = 175
Score = 63.9 bits (154), Expect = 3e-10 Identities = 31/65 (47%), Positives = 39/65 (60%), Gaps = 1/65 (1%) Frame = +3
Query: 54 FTCTVCQTRSAKTMSRETYEKGVVTARCGGCKNLHLIADRLGWFGEPG-SVEDFLNQKGV 230 FTCTVC TRS S++ Y G V +C CKN HL+AD L F E ++ED L +KG Sbjct: 80 FTCTVCNTRSNHNFSKQAYHNGTVLVQCPKCKNRHLMADHLKIFSEERVTIEDILAKKGE 139
Query: 231 EIRKG 245 +KG Sbjct: 140 TFKKG 144
>sp|P42844|ZIM17_YEAST Mitochondrial protein import protein ZIM17 OS=Saccharomyces cerevisiae GN=ZIM17 PE=1 SV=2 Length = 174
Score = 57.8 bits (138), Expect = 2e-08 Identities = 31/78 (39%), Positives = 43/78 (55%), Gaps = 1/78 (1%) Frame = +3
Query: 6 VNLGPKVSKRHNLAMIFTCTVCQTRSAKTMSRETYEKGVVTARCGGCKNLHLIADRLGWF 185 V+LG + + + FTC C TRS+ TMS++ YEKG V C CK HLIAD L F Sbjct: 57 VHLGSFKVDKPKMMIAFTCKKCNTRSSHTMSKQAYEKGTVLISCPHCKVRHLIADHLKIF 116
Query: 186 GEPG-SVEDFLNQKGVEI 236 + +VE + G ++ Sbjct: 117 HDHHVTVEQLMKANGEQV 134
>sp|Q9UKN1|MUC12_HUMAN Mucin-12 OS=Homo sapiens GN=MUC12 PE=1 SV=2 Length = 5478
Score = 32.3 bits (72), Expect = 1.0 Identities = 21/53 (39%), Positives = 27/53 (50%) Frame = -3
Query: 292 LQPARSSTENS*LSSVPFLISTPF*FRKSSTLPGSPNQPSLSAIRCKFLHPPQ 134 L PARS+T S P +S +++TLPGSP PSLS F P+ Sbjct: 1398 LSPARSTTSGLVGESTPSRLSPSS--TETTTLPGSPTTPSLSEKSTTFYTSPR 1448
Score = 32.3 bits (72), Expect = 1.0 Identities = 21/53 (39%), Positives = 27/53 (50%) Frame = -3
Query: 292 LQPARSSTENS*LSSVPFLISTPF*FRKSSTLPGSPNQPSLSAIRCKFLHPPQ 134 L PARS+T S P +S +++TLPGSP PSLS F P+ Sbjct: 2481 LSPARSTTSGLVGESTPSRLSPSS--TETTTLPGSPTTPSLSEKSTTFYTSPR 2531
Score = 32.3 bits (72), Expect = 1.0 Identities = 21/53 (39%), Positives = 27/53 (50%) Frame = -3
Query: 292 LQPARSSTENS*LSSVPFLISTPF*FRKSSTLPGSPNQPSLSAIRCKFLHPPQ 134 L PARS+T S P +S +++TLPGSP PSLS F P+ Sbjct: 2955 LSPARSTTSGLVGESTPSRLSPSS--TETTTLPGSPTTPSLSEKSTTFYTSPR 3005
Score = 32.3 bits (72), Expect = 1.0 Identities = 21/53 (39%), Positives = 27/53 (50%) Frame = -3
Query: 292 LQPARSSTENS*LSSVPFLISTPF*FRKSSTLPGSPNQPSLSAIRCKFLHPPQ 134 L PARS+T S P +S +++TLPGSP PSLS F P+ Sbjct: 4038 LSPARSTTSGLVGESTPSRLSPSS--TETTTLPGSPTTPSLSEKSTTFYTSPR 4088
>sp|Q12128|BAG7_YEAST Rho-GTPase-activating protein BAG7 OS=Saccharomyces cerevisiae GN=BAG7 PE=1 SV=1 Length = 409
Score = 31.2 bits (69), Expect = 2.3 Identities = 16/38 (42%), Positives = 22/38 (57%) Frame = -1
Query: 240 SLSPHPSDLGNPPRYQAPRTSLAYLQ*DASSCIPHSEQ 127 SL HP D P Y+A RT + +L AS IP++E+ Sbjct: 225 SLLSHPKDEMCPKEYEASRTVIEFLILHASDIIPNTEK 262
>sp|Q6P4L9|NFRKB_XENTR Nuclear factor related to kappa-B-binding protein OS=Xenopus tropicalis GN=nfrkb PE=2 SV=1 Length = 1265
Score = 30.0 bits (66), Expect = 5.1 Identities = 19/53 (35%), Positives = 24/53 (45%) Frame = -3
Query: 322 KECTYSLLGGLQPARSSTENS*LSSVPFLISTPF*FRKSSTLPGSPNQPSLSA 164 KEC+ L G +PA+ S S + P TP LP +P PS SA Sbjct: 691 KECSLKLCGTPEPAQLSLTESSMPPTPGTPGTP----TPPALPSTPMSPSTSA 739
>sp|P14133|ASO_CUCSA L-ascorbate oxidase OS=Cucumis sativus PE=1 SV=1 Length = 587
Score = 30.0 bits (66), Expect = 5.1 Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Frame = -3
Query: 430 WRVSSQRGTPW-DFTESISMGF*TPPKNRTFTEVVECKECTYSLLGGLQPARSS 272 W QRGTPW D T SIS P + T+ VV+ K TY G L RS+ Sbjct: 96 WHGILQRGTPWADGTASISQCAINPGETFTYRFVVD-KAGTYFYHGHLGMQRSA 148
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9SDD2 |
Definition |
tr|A9SDD2|A9SDD2_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens |
Align length |
95 |
Score (bit) |
156.0 |
E-value |
5.0e-37 |
Report |
|