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NBDC - LSDB Archive
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BP920290
Clone id YMU001_000135_C09
Library
Length 341
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000135_C09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CCTCATATCAACAAATATTAAATGTAAAAGAGGGGAATCCTATTGTAAGTATCCAAACAG
ACCAAAATGATGATACACGAGTCCTTTTCCACATATAACTCACTCTTTGTTTAACAATTT
TGTAAAATTTGTGGACCAGGTCACTTCCTCAAAACAAAACATTCGACTCAATCAATTGAC
TAAACAAAACGTACTTCACTCATCATCACAATCATTTTGGACAACTACTTGCTCGATTGC
ACTTTGAAAGCCTCTTCCATGCCATGATAGAGGTTGCTGCAGAAAGAGTAAACCATGTGA
ATGCATAACTTAAGTGGTCATTGGGCATGATAGATGAGCGG
■■Homology search results ■■ -
sp_hit_id Q9U4F3
Definition sp|Q9U4F3|SURF1_DROME SURF1-like protein OS=Drosophila melanogaster
Align length 27
Score (bit) 39.3
E-value 0.006
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920290|Adiantum capillus-veneris mRNA, clone:
YMU001_000135_C09.
         (341 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9U4F3|SURF1_DROME SURF1-like protein OS=Drosophila melanogas...    39   0.006
sp|Q15526|SURF1_HUMAN Surfeit locus protein 1 OS=Homo sapiens GN...    33   0.58 
sp|Q1RJM4|SURF1_RICBR SURF1-like protein OS=Rickettsia bellii (s...    32   0.75 
sp|Q9N5N8|SURF1_CAEEL SURF1-like protein OS=Caenorhabditis elega...    30   2.9  
sp|Q8K9V1|THRC_BUCAP Threonine synthase OS=Buchnera aphidicola s...    30   3.7  
sp|A9UWF0|SURF1_MONBE SURF1-like protein OS=Monosiga brevicollis...    30   3.7  
sp|O57593|SURF1_FUGRU Surfeit locus protein 1 (Fragment) OS=Fugu...    30   3.7  
sp|Q800L1|SURF1_CHICK Surfeit locus protein 1 OS=Gallus gallus G...    30   4.9  
sp|A8Y2C9|SURF1_CAEBR SURF1-like protein OS=Caenorhabditis brigg...    30   4.9  
sp|Q7MQJ5|RECF_VIBVY DNA replication and repair protein recF OS=...    30   4.9  
sp|Q8DDJ1|RECF_VIBVU DNA replication and repair protein recF OS=...    30   4.9  
sp|Q9QXU2|SURF1_RAT Surfeit locus protein 1 OS=Rattus norvegicus...    29   6.4  
sp|Q87TQ5|RECF_VIBPA DNA replication and repair protein recF OS=...    29   6.4  
sp|A7N1F1|RECF_VIBHB DNA replication and repair protein recF OS=...    29   6.4  
sp|Q9ZCJ8|SURF1_RICPR SURF1-like protein OS=Rickettsia prowazeki...    29   8.3  
sp|P09925|SURF1_MOUSE Surfeit locus protein 1 OS=Mus musculus GN...    29   8.3  
sp|Q5E8Z0|RECF_VIBF1 DNA replication and repair protein recF OS=...    29   8.3  
sp|O08999|LTBP2_MOUSE Latent-transforming growth factor beta-bin...    29   8.3  
sp|P01981|HBA_STRCA Hemoglobin subunit alpha-A OS=Struthio camel...    29   8.3  

>sp|Q9U4F3|SURF1_DROME SURF1-like protein OS=Drosophila melanogaster
           GN=Surf1 PE=2 SV=1
          Length = 300

 Score = 39.3 bits (90), Expect = 0.006
 Identities = 16/27 (59%), Positives = 22/27 (81%)
 Frame = -2

Query: 322 NDHLSYAFTWFTLSAATSIMAWKRLSK 242
           NDHLSY  TWF+LSAATS + ++++ K
Sbjct: 270 NDHLSYLVTWFSLSAATSFLWYRQIVK 296


>sp|Q15526|SURF1_HUMAN Surfeit locus protein 1 OS=Homo sapiens
           GN=SURF1 PE=1 SV=1
          Length = 300

 Score = 32.7 bits (73), Expect = 0.58
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = -2

Query: 322 NDHLSYAFTWFTLSAATSIMAWKR 251
           N+HL Y  TW+ LSAATS + +K+
Sbjct: 269 NEHLQYIVTWYGLSAATSYLWFKK 292


>sp|Q1RJM4|SURF1_RICBR SURF1-like protein OS=Rickettsia bellii
           (strain RML369-C) GN=RBE_0359 PE=3 SV=1
          Length = 241

 Score = 32.3 bits (72), Expect = 0.75
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = -2

Query: 322 NDHLSYAFTWFTLSAATSIM 263
           NDHL YAFTWF L+A+  ++
Sbjct: 196 NDHLEYAFTWFGLAASLVVI 215


>sp|Q9N5N8|SURF1_CAEEL SURF1-like protein OS=Caenorhabditis elegans
           GN=sft-1 PE=2 SV=1
          Length = 323

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 322 NDHLSYAFTWFTLSAATSIM 263
           N+HL+Y  TWFTL+  T +M
Sbjct: 297 NEHLNYLTTWFTLTLVTMLM 316


>sp|Q8K9V1|THRC_BUCAP Threonine synthase OS=Buchnera aphidicola
           subsp. Schizaphis graminum GN=thrC PE=3 SV=1
          Length = 429

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 15/41 (36%), Positives = 27/41 (65%)
 Frame = -1

Query: 317 PLKLCIHMVYSFCSNLYHGMEEAFKVQSSK*LSKMIVMMSE 195
           PLK+CI+   S C  L+HG   AFK   ++ +++MI+ +++
Sbjct: 85  PLKICINKNIS-CFELFHGPTLAFKDFGARFMAQMILCLNK 124


>sp|A9UWF0|SURF1_MONBE SURF1-like protein OS=Monosiga brevicollis
           GN=18583 PE=3 SV=1
          Length = 261

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 322 NDHLSYAFTWFTLSAATSIM 263
           N+HLSY  TW+++SA T  M
Sbjct: 220 NEHLSYIITWYSISAITLAM 239


>sp|O57593|SURF1_FUGRU Surfeit locus protein 1 (Fragment) OS=Fugu
           rubripes GN=surf1 PE=3 SV=1
          Length = 240

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 322 NDHLSYAFTWFTLSAATSIMAWKRLSK 242
           N+H+ Y  TW+ L AATS M + +  K
Sbjct: 210 NEHMQYIVTWYGLCAATSYMWFAKFIK 236


>sp|Q800L1|SURF1_CHICK Surfeit locus protein 1 OS=Gallus gallus
           GN=SURF1 PE=3 SV=1
          Length = 309

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -2

Query: 322 NDHLSYAFTWFTLSAATSIMAWKR 251
           N+H+ Y  TW+ L AATS + +++
Sbjct: 279 NEHMQYIVTWYGLCAATSFLWYRK 302


>sp|A8Y2C9|SURF1_CAEBR SURF1-like protein OS=Caenorhabditis briggsae
           GN=sft-1 PE=3 SV=1
          Length = 317

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 322 NDHLSYAFTWFTLSAATSIM 263
           N+H++Y  TWFTL+  T +M
Sbjct: 291 NEHMNYLTTWFTLTLVTMLM 310


>sp|Q7MQJ5|RECF_VIBVY DNA replication and repair protein recF
           OS=Vibrio vulnificus (strain YJ016) GN=recF PE=3 SV=1
          Length = 359

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -3

Query: 261 HGRGFQSAIEQVVVQNDCD 205
           HGR F+SA+   V+QN+CD
Sbjct: 48  HGRSFKSALTGRVIQNECD 66
tr_hit_id A9S1B8
Definition tr|A9S1B8|A9S1B8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 36
Score (bit) 50.4
E-value 4.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920290|Adiantum capillus-veneris mRNA, clone:
YMU001_000135_C09.
         (341 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9S1B8|A9S1B8_PHYPA Predicted protein OS=Physcomitrella paten...    50   4e-05
tr|A7PH97|A7PH97_VITVI Chromosome chr17 scaffold_16, whole genom...    49   2e-04
tr|Q9SE51|Q9SE51_ARATH Surfeit 1 (At3g17910) OS=Arabidopsis thal...    48   2e-04
tr|Q9LVH9|Q9LVH9_ARATH Surfeit 1 homolog OS=Arabidopsis thaliana...    48   2e-04
tr|B6U8E5|B6U8E5_MAIZE SURF1 OS=Zea mays PE=2 SV=1                     48   2e-04
tr|Q10QD6|Q10QD6_ORYSJ Os03g0200700 protein OS=Oryza sativa subs...    44   0.003
tr|A3AF61|A3AF61_ORYSJ Putative uncharacterized protein OS=Oryza...    44   0.003
tr|A2XDL6|A2XDL6_ORYSI Putative uncharacterized protein OS=Oryza...    44   0.003
tr|A9VZ51|A9VZ51_METEP Surfeit locus 1 family protein OS=Methylo...    40   0.058
tr|B7KVJ2|B7KVJ2_METCH Surfeit locus 1 family protein OS=Methylo...    40   0.058
tr|B1M590|B1M590_METRJ Surfeit locus 1 family protein OS=Methylo...    40   0.076
tr|B3M9F7|B3M9F7_DROAN GF23555 OS=Drosophila ananassae GN=GF2355...    40   0.076
tr|A7ISK0|A7ISK0_MYCPJ Putative uncharacterized protein DS19 OS=...    40   0.076
tr|B4QJV2|B4QJV2_DROSI GD13981 OS=Drosophila simulans GN=GD13981...    39   0.099
tr|B4PJT4|B4PJT4_DROYA GE21584 OS=Drosophila yakuba GN=GE21584 P...    39   0.099
tr|B4HUZ7|B4HUZ7_DROSE GM14809 OS=Drosophila sechellia GN=GM1480...    39   0.099
tr|B3NFK7|B3NFK7_DROER GG14394 OS=Drosophila erecta GN=GG14394 P...    39   0.099
tr|B1ZKN3|B1ZKN3_METPB Surfeit locus 1 family protein OS=Methylo...    39   0.13 
tr|B4MKU0|B4MKU0_DROWI GK16990 OS=Drosophila willistoni GN=GK169...    39   0.13 
tr|Q29F38|Q29F38_DROPS GA22142 OS=Drosophila pseudoobscura pseud...    39   0.17 
tr|B4J388|B4J388_DROGR GH15370 OS=Drosophila grimshawi GN=GH1537...    39   0.17 
tr|B4HAY4|B4HAY4_DROPE GL15049 OS=Drosophila persimilis GN=GL150...    39   0.17 
tr|A3W2H6|A3W2H6_9RHOB SURF1 family protein OS=Roseovarius sp. 2...    38   0.29 
tr|B4LF29|B4LF29_DROVI GJ13118 OS=Drosophila virilis GN=GJ13118 ...    38   0.29 
tr|A6DUW7|A6DUW7_9RHOB SURF1 family protein OS=Roseovarius sp. T...    37   0.49 
tr|Q00Y89|Q00Y89_OSTTA Surfeit 1 (ISS) OS=Ostreococcus tauri GN=...    37   0.49 
tr|Q7SEQ5|Q7SEQ5_NEUCR Putative uncharacterized protein OS=Neuro...    37   0.49 
tr|Q0V6N4|Q0V6N4_PHANO Putative uncharacterized protein OS=Phaeo...    37   0.49 
tr|A5ABP8|A5ABP8_ASPNC Similarity to protein SURF1 - Mus musculu...    37   0.49 
tr|Q167V7|Q167V7_ROSDO SURF1 family protein, putative OS=Roseoba...    37   0.64 

>tr|A9S1B8|A9S1B8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_122821 PE=4 SV=1
          Length = 264

 Score = 50.4 bits (119), Expect = 4e-05
 Identities = 22/36 (61%), Positives = 27/36 (75%)
 Frame = -2

Query: 340 RSSIMPNDHLSYAFTWFTLSAATSIMAWKRLSKCNR 233
           +SS+MP DHL+YA TW+TLSAAT+ M  KRL    R
Sbjct: 227 KSSVMPQDHLNYALTWYTLSAATTFMTVKRLKSGKR 262


>tr|A7PH97|A7PH97_VITVI Chromosome chr17 scaffold_16, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00017860001
           PE=4 SV=1
          Length = 349

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 19/32 (59%), Positives = 27/32 (84%)
 Frame = -2

Query: 340 RSSIMPNDHLSYAFTWFTLSAATSIMAWKRLS 245
           RSS+MP DHL+Y  TW++LSAA + MA+KR++
Sbjct: 312 RSSVMPQDHLNYTLTWYSLSAAVTFMAFKRIT 343


>tr|Q9SE51|Q9SE51_ARATH Surfeit 1 (At3g17910) OS=Arabidopsis
           thaliana GN=SURF1 PE=2 SV=1
          Length = 354

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 19/31 (61%), Positives = 26/31 (83%)
 Frame = -2

Query: 340 RSSIMPNDHLSYAFTWFTLSAATSIMAWKRL 248
           RS +MP DHL+Y+ TW++LSAA + MA+KRL
Sbjct: 317 RSKVMPQDHLNYSITWYSLSAAVTFMAYKRL 347


>tr|Q9LVH9|Q9LVH9_ARATH Surfeit 1 homolog OS=Arabidopsis thaliana
           PE=4 SV=1
          Length = 243

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 19/31 (61%), Positives = 26/31 (83%)
 Frame = -2

Query: 340 RSSIMPNDHLSYAFTWFTLSAATSIMAWKRL 248
           RS +MP DHL+Y+ TW++LSAA + MA+KRL
Sbjct: 206 RSKVMPQDHLNYSITWYSLSAAVTFMAYKRL 236


>tr|B6U8E5|B6U8E5_MAIZE SURF1 OS=Zea mays PE=2 SV=1
          Length = 344

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 20/31 (64%), Positives = 25/31 (80%)
 Frame = -2

Query: 340 RSSIMPNDHLSYAFTWFTLSAATSIMAWKRL 248
           R S+MP+DHL Y FTW+TLSAA + MA KR+
Sbjct: 307 RHSVMPDDHLKYTFTWYTLSAAVTYMASKRI 337


>tr|Q10QD6|Q10QD6_ORYSJ Os03g0200700 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0200700 PE=2 SV=1
          Length = 343

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 18/29 (62%), Positives = 23/29 (79%)
 Frame = -2

Query: 334 SIMPNDHLSYAFTWFTLSAATSIMAWKRL 248
           S+MP+DHL Y  TW+TLSAA + MA KR+
Sbjct: 308 SVMPHDHLKYTVTWYTLSAAVTFMAAKRI 336


>tr|A3AF61|A3AF61_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_009433 PE=4 SV=1
          Length = 363

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 18/29 (62%), Positives = 23/29 (79%)
 Frame = -2

Query: 334 SIMPNDHLSYAFTWFTLSAATSIMAWKRL 248
           S+MP+DHL Y  TW+TLSAA + MA KR+
Sbjct: 308 SVMPHDHLKYTVTWYTLSAAVTFMAAKRI 336


>tr|A2XDL6|A2XDL6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_10411 PE=4 SV=1
          Length = 363

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 18/29 (62%), Positives = 23/29 (79%)
 Frame = -2

Query: 334 SIMPNDHLSYAFTWFTLSAATSIMAWKRL 248
           S+MP+DHL Y  TW+TLSAA + MA KR+
Sbjct: 308 SVMPHDHLKYTVTWYTLSAAVTFMAAKRI 336


>tr|A9VZ51|A9VZ51_METEP Surfeit locus 1 family protein
           OS=Methylobacterium extorquens (strain PA1) GN=Mext_3256
           PE=3 SV=1
          Length = 256

 Score = 40.0 bits (92), Expect = 0.058
 Identities = 17/31 (54%), Positives = 22/31 (70%), Gaps = 4/31 (12%)
 Frame = -2

Query: 328 MPNDHLSYAFTWFTLSAAT----SIMAWKRL 248
           +PN+HL YAFTWF ++A      S+ AWKRL
Sbjct: 217 LPNNHLQYAFTWFGIAACLIGVFSVFAWKRL 247


>tr|B7KVJ2|B7KVJ2_METCH Surfeit locus 1 family protein
           OS=Methylobacterium chloromethanicum CM4 GN=Mchl_3580
           PE=4 SV=1
          Length = 256

 Score = 40.0 bits (92), Expect = 0.058
 Identities = 17/31 (54%), Positives = 22/31 (70%), Gaps = 4/31 (12%)
 Frame = -2

Query: 328 MPNDHLSYAFTWFTLSAAT----SIMAWKRL 248
           +PN+HL YAFTWF ++A      S+ AWKRL
Sbjct: 217 LPNNHLQYAFTWFGIAACLIGVFSVFAWKRL 247