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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920292
Clone id YMU001_000135_C11
Library
Length 482
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000135_C11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GCAGGTACTCCTTTGAAGGAGTACCCAGTGCTTCTTCTTCTGACAGTTCTTCTCGCTCTT
CATATTCGAGCGAAGGAGACAGAAAAGGCAAAAAGCGAAGCAAGAAACAACACTTCGGAA
AGGGCAAGAAAAAGGCAAAGAAGCCTCAATCTCGCCCAGTGACTGACAGTTCTACTGAGG
ACTCGTCTTCAGACAGTTCAGACTCGGATGACGGAAACTTTTATGCGAACAAGAAGAATT
TTTATAAAGCCAACCAGTATGACTTCCTTGAAGATAAAAGCAAGAGAGTTCGAGAGTTTA
AGGAAGGTGGACACTCCATCAAATTTGACACTTTTTCAGGATACTCAGATGCTTCGAAGG
CTTTGTCTTTCATAGAGCAGTTTGACATCGCTTTCGCGGGAGGACGCTACTCAGAGCACT
CCAAGATTCGGAGAGCTGCCTCTTACTTTAAGGGGAATGCTCGCACTTGGTGGTCCACGC
TT
■■Homology search results ■■ -
sp_hit_id Q2NNR5
Definition sp|Q2NNR5|CLTR1_CAVPO Cysteinyl leukotriene receptor 1 OS=Cavia porcellus
Align length 71
Score (bit) 32.3
E-value 1.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920292|Adiantum capillus-veneris mRNA, clone:
YMU001_000135_C11.
         (482 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q2NNR5|CLTR1_CAVPO Cysteinyl leukotriene receptor 1 OS=Cavia ...    32   1.2  
sp|A7HZN6|AROC_CAMHC Chorismate synthase OS=Campylobacter homini...    32   1.2  
sp|Q7VIA8|AROC_HELHP Chorismate synthase OS=Helicobacter hepatic...    32   2.0  
sp|A6GXP5|AROC_FLAPJ Chorismate synthase OS=Flavobacterium psych...    30   4.4  
sp|Q058B0|AROC_BUCCC Chorismate synthase OS=Buchnera aphidicola ...    30   4.4  
sp|Q9UUI7|TPSY_SCHPO Putative alpha,alpha-trehalose-phosphate sy...    30   5.7  
sp|O77656|MMP13_BOVIN Collagenase 3 OS=Bos taurus GN=MMP13 PE=2 ...    30   5.7  
sp|Q6PEH4|DEF_DANRE Digestive organ expansion factor OS=Danio re...    30   5.7  
sp|Q95N02|CLTR1_PIG Cysteinyl leukotriene receptor 1 OS=Sus scro...    30   7.5  

>sp|Q2NNR5|CLTR1_CAVPO Cysteinyl leukotriene receptor 1 OS=Cavia
           porcellus GN=CYSLTR1 PE=2 SV=1
          Length = 340

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 19/71 (26%), Positives = 33/71 (46%)
 Frame = -3

Query: 246 YKNSSCSHKSFRHPSLNCLKTSPQ*NCQSLGEIEASLPFSCPFRSVVSCFAFCLFCLLRS 67
           YK+   + K F  P  N  K         L  +   + F  PF +++ C+   +F LL+S
Sbjct: 167 YKDEKNNTKCFEPPQDNQAKNY----VLILHYVSLFIGFIIPFITIIVCYTMIIFTLLKS 222

Query: 66  NMKSEKNCQKK 34
           +MK   + +K+
Sbjct: 223 SMKKNLSSRKR 233


>sp|A7HZN6|AROC_CAMHC Chorismate synthase OS=Campylobacter hominis
           (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A)
           GN=aroC PE=3 SV=1
          Length = 366

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = +3

Query: 222 YANKKNFYKANQYDFLEDKSKRVREFKEGGHSIKFDTFSGYSDASKALSFIEQFDIAFAG 401
           Y N KN ++    DF   K   +R+++ GG S   +T    +  + A   + +FDI    
Sbjct: 92  YENIKNLFRPGHADFGYFKKFVIRDYRGGGRSSARETAVRVAAGAFAQILLNEFDICVQS 151

Query: 402 GRYS 413
           G +S
Sbjct: 152 GIFS 155


>sp|Q7VIA8|AROC_HELHP Chorismate synthase OS=Helicobacter hepaticus
           GN=aroC PE=3 SV=1
          Length = 358

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 15/61 (24%), Positives = 30/61 (49%)
 Frame = +3

Query: 222 YANKKNFYKANQYDFLEDKSKRVREFKEGGHSIKFDTFSGYSDASKALSFIEQFDIAFAG 401
           YAN K+ ++    D+   K   +R+++ GG S   ++ +  +  + A   + +FDI    
Sbjct: 93  YANIKDIFRPGHADYTYFKKYGIRDYRGGGRSSARESVARVAAGAVAQMLLREFDINVQS 152

Query: 402 G 404
           G
Sbjct: 153 G 153


>sp|A6GXP5|AROC_FLAPJ Chorismate synthase OS=Flavobacterium
           psychrophilum (strain JIP02/86 / ATCC 49511) GN=aroC
           PE=3 SV=1
          Length = 355

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 12/39 (30%), Positives = 25/39 (64%)
 Frame = +3

Query: 222 YANKKNFYKANQYDFLEDKSKRVREFKEGGHSIKFDTFS 338
           Y++ K+ Y+ +  D++ +K  R+R+++ GG S   +T S
Sbjct: 95  YSHIKDSYRPSHADYVYEKKYRIRDYRGGGRSSARETAS 133


>sp|Q058B0|AROC_BUCCC Chorismate synthase OS=Buchnera aphidicola
           subsp. Cinara cedri GN=aroC PE=3 SV=1
          Length = 353

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 222 YANKKNFYKANQYDFLEDKSKRVREFKEGGHSIKFDT 332
           Y+  KN Y+ N  D+  +K   +R+++ GG S   +T
Sbjct: 95  YSEIKNLYRPNHADYTYEKKYGIRDYRGGGRSSARET 131


>sp|Q9UUI7|TPSY_SCHPO Putative alpha,alpha-trehalose-phosphate
           synthase [UDP-forming] 100 kDa subunit
           OS=Schizosaccharomyces pombe GN=SPAC22F8.05 PE=1 SV=1
          Length = 891

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +3

Query: 345 SDASKALSFIEQFDIAFAGGRYSEHSKIRRAASYFKGNARTW 470
           S   +  S + +F + F G RY +H+K R     F GNA TW
Sbjct: 617 SQQKRDFSRLPRFTLNFIGNRY-DHAKKRLLILNFDGNAVTW 657


>sp|O77656|MMP13_BOVIN Collagenase 3 OS=Bos taurus GN=MMP13 PE=2
           SV=1
          Length = 471

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = +3

Query: 219 FYANKKNFYKANQYDFLEDKSKRVREFKEGGHSIKFDTFSGYSDASKALSFIE 377
           F    + F+  + YD LED  K++ E     H  K      + D+ K L F E
Sbjct: 347 FIFRGRKFWALSGYDILEDYPKKISELGFPKHVKKISAALHFEDSGKTLFFSE 399


>sp|Q6PEH4|DEF_DANRE Digestive organ expansion factor OS=Danio rerio
           GN=def PE=2 SV=2
          Length = 753

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 17/67 (25%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
 Frame = +3

Query: 255 QYDFLEDKSKRVREFKEGGHSIKFDTFSGYSDASKALSFIEQFDIAFAG-GRYSEHSKIR 431
           ++ F  DK   + ++++   S  F     Y D  +  +++++ D++FA    YS+ S++ 
Sbjct: 586 RFQFFVDKI--LPQYRDSVMSHTFIYVPSYFDFVRLRNYLKKEDVSFANISEYSQRSEVS 643

Query: 432 RAASYFK 452
           RA  YF+
Sbjct: 644 RARHYFQ 650


>sp|Q95N02|CLTR1_PIG Cysteinyl leukotriene receptor 1 OS=Sus scrofa
           GN=CYSLTR1 PE=2 SV=1
          Length = 340

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 18/71 (25%), Positives = 32/71 (45%)
 Frame = -3

Query: 246 YKNSSCSHKSFRHPSLNCLKTSPQ*NCQSLGEIEASLPFSCPFRSVVSCFAFCLFCLLRS 67
           YK+   + K F  P  N  K     +   L  +   + F  PF  ++ C+   +  LL++
Sbjct: 167 YKDEKNNTKCFEPPQXNQAKY----HVLVLHYVSLFVGFIIPFVIIIVCYTMIILTLLKN 222

Query: 66  NMKSEKNCQKK 34
           +MK   + +KK
Sbjct: 223 SMKKNISSRKK 233
tr_hit_id Q2QSZ8
Definition tr|Q2QSZ8|Q2QSZ8_ORYSJ Retrotransposon protein, putative, Ty3-gypsy subclass OS=Oryza sativa subsp. japonica
Align length 73
Score (bit) 40.4
E-value 0.044
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920292|Adiantum capillus-veneris mRNA, clone:
YMU001_000135_C11.
         (482 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q2QSZ8|Q2QSZ8_ORYSJ Retrotransposon protein, putative, Ty3-gy...    40   0.044
tr|Q9LQH2|Q9LQH2_ARATH F15O4.13 OS=Arabidopsis thaliana PE=4 SV=1      40   0.057
tr|B8AGP1|B8AGP1_ORYSI Putative uncharacterized protein OS=Oryza...    36   1.1  
tr|B8BPI0|B8BPI0_ORYSI Putative uncharacterized protein OS=Oryza...    35   1.8  
tr|A3BIW7|A3BIW7_ORYSJ Putative uncharacterized protein OS=Oryza...    35   2.4  
tr|A5B1A3|A5B1A3_VITVI Putative uncharacterized protein OS=Vitis...    34   3.1  
tr|Q9ZS84|Q9ZS84_SOLLC Polyprotein OS=Solanum lycopersicum PE=4 ...    34   4.1  
tr|Q9AXC5|Q9AXC5_ANTHI Putative uncharacterized protein OS=Antir...    34   4.1  
tr|Q5NRP7|Q5NRP7_SOLDE Putative gag-pol polyprotein, identical O...    33   7.0  
tr|Q5NRP4|Q5NRP4_SOLDE Putative gag-pol polyprotein, identical O...    33   7.0  
tr|Q10IF4|Q10IF4_ORYSJ Retrotransposon protein, putative, Ty3-gy...    33   7.0  
tr|Q0DJL7|Q0DJL7_ORYSJ Os05g0263200 protein OS=Oryza sativa subs...    33   7.0  
tr|A5BX03|A5BX03_VITVI Putative uncharacterized protein OS=Vitis...    33   7.0  
tr|A5B1B2|A5B1B2_VITVI Putative uncharacterized protein OS=Vitis...    33   7.0  
tr|A4K7M3|A4K7M3_ORYSJ Putative polyprotein OS=Oryza sativa subs...    33   7.0  
tr|A3C075|A3C075_ORYSJ Putative uncharacterized protein OS=Oryza...    33   7.0  
tr|Q47FM9|Q47FM9_DECAR Putative competence lipoprotein OS=Dechlo...    33   9.2  

>tr|Q2QSZ8|Q2QSZ8_ORYSJ Retrotransposon protein, putative, Ty3-gypsy
           subclass OS=Oryza sativa subsp. japonica
           GN=LOC_Os12g22370 PE=4 SV=1
          Length = 315

 Score = 40.4 bits (93), Expect = 0.044
 Identities = 22/73 (30%), Positives = 34/73 (46%)
 Frame = +3

Query: 264 FLEDKSKRVREFKEGGHSIKFDTFSGYSDASKALSFIEQFDIAFAGGRYSEHSKIRRAAS 443
           + +  + RV +        K  +F GY DA K L +    +  F+     EH +++RA S
Sbjct: 111 YQQGNTNRVPDDLYAKFMFKIPSFLGYYDAEKYLDWEMTIEQKFSAHLVPEHHRVQRATS 170

Query: 444 YFKGNARTWWSTL 482
            FK  A  WW+ L
Sbjct: 171 EFKDFAIIWWTGL 183


>tr|Q9LQH2|Q9LQH2_ARATH F15O4.13 OS=Arabidopsis thaliana PE=4 SV=1
          Length = 1887

 Score = 40.0 bits (92), Expect = 0.057
 Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
 Frame = +3

Query: 273 DKSKRVREFKE-GGHSIKFDTFSGYSDASKALSFIEQFDIAFAGGRYSEHSKIRRAASYF 449
           D+ +RV    +  G  I+  +F G +D  + L + ++ ++ F   +Y+E SK++ A + F
Sbjct: 423 DREERVLPRDDLAGLKIRIPSFKGTNDPDEYLEWEKKIELVFNCQQYTEESKVKVAPTEF 482

Query: 450 KGNARTWWSTL 482
           +  A +WW  L
Sbjct: 483 QNYALSWWDQL 493


>tr|B8AGP1|B8AGP1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_07030 PE=4 SV=1
          Length = 165

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +3

Query: 333 FSGYSDASKALSFIEQFDIAFAGGRYSEHSKIRRAASYFKGNARTWWSTL 482
           F G  D+   L++  + D  F    YSE  K+R A+  F G A +WW+ L
Sbjct: 4   FLGSGDSEDYLAWEMRCDQIFNSHNYSEDKKVRLASIEFTGYALSWWNQL 53


>tr|B8BPI0|B8BPI0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_38235 PE=4 SV=1
          Length = 966

 Score = 35.0 bits (79), Expect = 1.8
 Identities = 20/59 (33%), Positives = 25/59 (42%)
 Frame = +3

Query: 306 GGHSIKFDTFSGYSDASKALSFIEQFDIAFAGGRYSEHSKIRRAASYFKGNARTWWSTL 482
           G   I    F G  D    L +  + D  F    YSE  K R A+  F G A +WW+ L
Sbjct: 641 GKIKISMSAFLGSGDPEDYLQWEMRCDQIFNSHNYSEDKKARLASIEFTGYALSWWNQL 699


>tr|A3BIW7|A3BIW7_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_022989 PE=4 SV=1
          Length = 486

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +3

Query: 333 FSGYSDASKALSFIEQFDIAFAGGRYSEHSKIRRAASYFKGNARTWWSTL 482
           FSG  D+   L++  + D  F    YSE  K+R A+  F   A +WW+ L
Sbjct: 131 FSGSGDSEDYLAWEMRCDQIFNSHNYSEDKKVRLASIEFTCYALSWWNQL 180


>tr|A5B1A3|A5B1A3_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_028082 PE=4 SV=1
          Length = 594

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 330 TFSGYSDASKALSFIEQFDIAF-AGGRYSEHSKIRRAASYFKGNARTWW 473
           TFSG  DA +  +F+   +  F A     E +K+R A  YF  NA  WW
Sbjct: 137 TFSGKRDAKELDNFLWHMERYFEAIALMDEATKVRTATLYFTDNATLWW 185


>tr|Q9ZS84|Q9ZS84_SOLLC Polyprotein OS=Solanum lycopersicum PE=4
           SV=1
          Length = 1542

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +3

Query: 333 FSGYSDASKALSFIEQFDIAFAGGRYSEHSKIRRAASYFKGNARTWWST 479
           FSG   A +  +FI   +  F   R  +  K+     Y  G+A+ WW T
Sbjct: 118 FSGARSAKELENFIWDMEQYFTAARVPDADKLNITTMYLSGDAKLWWRT 166


>tr|Q9AXC5|Q9AXC5_ANTHI Putative uncharacterized protein
           OS=Antirrhinum hispanicum PE=4 SV=1
          Length = 1299

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +3

Query: 333 FSGYSDASKALSFIEQFDIAFAGGRYSEHSKIRRAASYFKGNARTWWSTL 482
           F G  D  K  S++E+ +  F+   Y E  K+  AA   +  AR WW  L
Sbjct: 263 FLGEPDDRKPESWVEEMEKIFSVTNYKEEKKVNFAAFRLEDAARHWWRIL 312


>tr|Q5NRP7|Q5NRP7_SOLDE Putative gag-pol polyprotein, identical
           OS=Solanum demissum GN=SDM1_58t00003 PE=4 SV=1
          Length = 1588

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 18/66 (27%), Positives = 27/66 (40%)
 Frame = +3

Query: 285 RVREFKEGGHSIKFDTFSGYSDASKALSFIEQFDIAFAGGRYSEHSKIRRAASYFKGNAR 464
           RV +       +K  +F G  D    L +  + +  F    YSE  K++ A   F   A 
Sbjct: 108 RVEDDNINSIKMKMSSFKGTRDPDLYLDWERRVEAIFDCHNYSEGKKVKLAVVEFSDYAA 167

Query: 465 TWWSTL 482
           +WW  L
Sbjct: 168 SWWKKL 173


>tr|Q5NRP4|Q5NRP4_SOLDE Putative gag-pol polyprotein, identical
           OS=Solanum demissum GN=SDM1_58t00004 PE=4 SV=1
          Length = 1588

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 18/66 (27%), Positives = 27/66 (40%)
 Frame = +3

Query: 285 RVREFKEGGHSIKFDTFSGYSDASKALSFIEQFDIAFAGGRYSEHSKIRRAASYFKGNAR 464
           RV +       +K  +F G  D    L +  + +  F    YSE  K++ A   F   A 
Sbjct: 108 RVEDDNINSIKMKMSSFKGTRDPDLYLDWERRVEAIFDCHNYSEGKKVKLAVVEFSDYAA 167

Query: 465 TWWSTL 482
           +WW  L
Sbjct: 168 SWWKKL 173