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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920300
Clone id YMU001_000135_D08
Library
Length 494
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000135_D08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TAGTGGAGATGACATTTCGGGGGGCCAACAGGGTGCCTCTGGCTCTGGAACAATACGGGT
ATGTCAGGATTATGGAGTAGAGGTAGGTGGATTGGTTACGAGGAGAATGCTGCCAATCAC
CAGTCCGTCATTATTGGATATTGTTCCGTCTTCTTCCAATGAGCATGTGGTGAGGTCAAG
TCAAGGAAGTACTCAGGATTTAGGTTCAAATCAGGTGTCGAATACCTCAGTTTGCTCTTT
TGTATTGCATAGAGATGATGGGATTGAGGATTCCATTGAGGATTCTGCAAAGTATAAAAC
ACAACAAGCCGACCCAGACTAAAAGAGCAATTTAGGCTTAGCAGGGGAGGAATGTTTTCA
ACAGTTTGTGCAGGTTTTACAACTGGTTTTATACCAGCATTGTCGGTTACATGTCTGGCA
GTGACTTGGCGGCCATGCTCCAGAGATATCTATGATACCATTTTCTTGTTAGTACCGCGA
TGAAGAACAAAGGT
■■Homology search results ■■ -
sp_hit_id Q6FS70
Definition sp|Q6FS70|PAN2_CANGA PAB-dependent poly(A)-specific ribonuclease subunit PAN2 OS=Candida glabrata
Align length 86
Score (bit) 32.3
E-value 1.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920300|Adiantum capillus-veneris mRNA, clone:
YMU001_000135_D08.
         (494 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6FS70|PAN2_CANGA PAB-dependent poly(A)-specific ribonuclease...    32   1.2  
sp|P59348|Y6755_BRAJA UPF0229 protein bll6755 OS=Bradyrhizobium ...    31   2.7  
sp|Q26627|SUREJ_STRPU Sperm receptor for egg jelly OS=Strongyloc...    30   4.6  
sp|P05881|ENV_HV1ZH Envelope glycoprotein gp160 OS=Human immunod...    30   4.6  
sp|Q9QBZ8|ENV_HV197 Envelope glycoprotein gp160 OS=Human immunod...    30   4.6  
sp|A1U5G5|CCA_MARAV CCA-adding enzyme OS=Marinobacter aquaeolei ...    30   6.0  
sp|Q96JM2|ZN462_HUMAN Zinc finger protein 462 OS=Homo sapiens GN...    30   7.9  
sp|Q9ZSB5|UBP10_ARATH Ubiquitin carboxyl-terminal hydrolase 10 O...    30   7.9  
sp|A4IXV3|SYFA_FRATW Phenylalanyl-tRNA synthetase alpha chain OS...    30   7.9  
sp|Q5NG53|SYFA_FRATT Phenylalanyl-tRNA synthetase alpha chain OS...    30   7.9  
sp|Q0BLJ8|SYFA_FRATO Phenylalanyl-tRNA synthetase alpha chain OS...    30   7.9  
sp|Q2A322|SYFA_FRATH Phenylalanyl-tRNA synthetase alpha chain OS...    30   7.9  
sp|A7NCN7|SYFA_FRATF Phenylalanyl-tRNA synthetase alpha chain OS...    30   7.9  
sp|Q14HK5|SYFA_FRAT1 Phenylalanyl-tRNA synthetase alpha chain OS...    30   7.9  

>sp|Q6FS70|PAN2_CANGA PAB-dependent poly(A)-specific ribonuclease
           subunit PAN2 OS=Candida glabrata GN=PAN2 PE=3 SV=1
          Length = 1093

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
 Frame = -1

Query: 443 LEHG--RQVTARHVTDNAGIKPVVKPAQTVENIPPLLSLNCSFSLGRLVVFYTLQNPQWN 270
           +EHG    +      +  GIK  ++   +++ +PP+LSL+  F    + +  T +N  W 
Sbjct: 680 IEHGLKNSIVLNKKCEQCGIKENLEEDISIQELPPILSLSLEFDDNAMKLAKTTKN--WL 737

Query: 269 PQSHHLYAIQKSK--LRYSTPDLNLN 198
           P+  +  +I K+K  +R S  D+  N
Sbjct: 738 PKEFYA-SIMKNKPLVRGSVNDIRTN 762


>sp|P59348|Y6755_BRAJA UPF0229 protein bll6755 OS=Bradyrhizobium
           japonicum GN=bll6755 PE=3 SV=1
          Length = 427

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
 Frame = +2

Query: 161 EHVVRSSQGSTQDLGSNQVSNTSVCSFVLHRDDGIE---DSIE--DSAKYKTQQADPD 319
           +++ RS QGS +D G  +  +     FVL RD+ ++   D +E  D AK K  Q + +
Sbjct: 86  DYLQRSGQGSAKDSGPGEGDSEDAFRFVLSRDEFVDLFLDDLELPDLAKRKIAQTESE 143


>sp|Q26627|SUREJ_STRPU Sperm receptor for egg jelly
            OS=Strongylocentrotus purpuratus GN=REJ PE=1 SV=1
          Length = 1450

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 23/80 (28%), Positives = 39/80 (48%)
 Frame = +2

Query: 50   TIRVCQDYGVEVGGLVTRRMLPITSPSLLDIVPSSSNEHVVRSSQGSTQDLGSNQVSNTS 229
            TI   QD  +  G + +     ITSP+L   V S S + +  ++ G  +DLGS ++ +  
Sbjct: 1106 TINDIQD-AIVAGKIPSEAATIITSPALSIAVGSISRDELAEATFGGPEDLGSFRMPSQD 1164

Query: 230  VCSFVLHRDDGIEDSIEDSA 289
            V +  +    G   S++ SA
Sbjct: 1165 VLNQAMEHALGTTVSMKMSA 1184


>sp|P05881|ENV_HV1ZH Envelope glycoprotein gp160 OS=Human
           immunodeficiency virus type 1 (isolate Z321 group M
           subtype A) GN=env PE=3 SV=1
          Length = 856

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +1

Query: 25  PTGCLW--LWNNTGMSGLWSRGRWIGYEENAANHQSVI 132
           PT   W   W+N   S +W +  W+ +++  +N+  VI
Sbjct: 605 PTNVPWNSSWSNKSQSDIWDKMTWLEWDKEVSNYTQVI 642


>sp|Q9QBZ8|ENV_HV197 Envelope glycoprotein gp160 OS=Human
           immunodeficiency virus type 1 (isolate 97ZR-EQTB11 group
           M subtype K) GN=env PE=3 SV=2
          Length = 851

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 46  WNNTGMSGLWSRGRWIGYEENAANHQSVI 132
           W+N   S +W    W+ +E+  +NH S I
Sbjct: 609 WSNKSQSEIWENMTWMQWEKEISNHTSTI 637


>sp|A1U5G5|CCA_MARAV CCA-adding enzyme OS=Marinobacter aquaeolei
           (strain ATCC 700491 / DSM 11845 / VT8) GN=cca PE=3 SV=1
          Length = 373

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 13/58 (22%), Positives = 28/58 (48%)
 Frame = -1

Query: 257 HLYAIQKSKLRYSTPDLNLNPEYFLDLTSPHAHWKKTEQYPIMTDW*LAAFSS*PIHL 84
           HL  +  ++L  ++P+  L PE  ++L      W++ +++ ++         S P HL
Sbjct: 267 HLVGLFMAQLNGASPETRLTPELAMELLDKADFWRRPDRFGVLLGTLACTLQSEPDHL 324


>sp|Q96JM2|ZN462_HUMAN Zinc finger protein 462 OS=Homo sapiens
           GN=ZNF462 PE=1 SV=2
          Length = 1412

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 21/71 (29%), Positives = 30/71 (42%)
 Frame = +2

Query: 122 SPSLLDIVPSSSNEHVVRSSQGSTQDLGSNQVSNTSVCSFVLHRDDGIEDSIEDSAKYKT 301
           SPS + I      E  V +S  ST  L S+ V    +C +      GI        K+  
Sbjct: 473 SPSQVSITEEEVGEEPVSTSHFSTSHLVSHTVFRCQLCKYFCSTRKGIARHYR--IKHNN 530

Query: 302 QQADPD*KSNL 334
            +A P+ K+NL
Sbjct: 531 VRAQPEGKNNL 541


>sp|Q9ZSB5|UBP10_ARATH Ubiquitin carboxyl-terminal hydrolase 10
           OS=Arabidopsis thaliana GN=UBP10 PE=2 SV=2
          Length = 923

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +2

Query: 50  TIRVCQDYGVEVGGLVTRRMLPITSP-SLLDIVPSSSNEHVVRSSQGSTQDLGSNQVSNT 226
           ++ + QD  VEV GL +     ++S  + L +VP   +  +V  + G T   G +  SN 
Sbjct: 217 SLHMDQDILVEVDGLSSSSQSAMSSTGNELALVPLEPSRSIVTIAGGPTLSNGHSTTSNF 276

Query: 227 SVCSFVLHRDDG 262
           S+   +   DDG
Sbjct: 277 SLFPRITSEDDG 288


>sp|A4IXV3|SYFA_FRATW Phenylalanyl-tRNA synthetase alpha chain
           OS=Francisella tularensis subsp. tularensis (strain
           WY96-3418) GN=pheS PE=3 SV=1
          Length = 337

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +1

Query: 169 GEVKSRKYSGFRFKSGVEYLSLL 237
           G + S KY GF F  GVE LS+L
Sbjct: 294 GNIDSEKYQGFAFGMGVERLSML 316


>sp|Q5NG53|SYFA_FRATT Phenylalanyl-tRNA synthetase alpha chain
           OS=Francisella tularensis subsp. tularensis GN=pheS PE=3
           SV=1
          Length = 337

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +1

Query: 169 GEVKSRKYSGFRFKSGVEYLSLL 237
           G + S KY GF F  GVE LS+L
Sbjct: 294 GNIDSEKYQGFAFGMGVERLSML 316
tr_hit_id A5WG91
Definition tr|A5WG91|A5WG91_PSYWF Putative uncharacterized protein OS=Psychrobacter sp. (strain PRwf-1)
Align length 81
Score (bit) 35.8
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920300|Adiantum capillus-veneris mRNA, clone:
YMU001_000135_D08.
         (494 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5WG91|A5WG91_PSYWF Putative uncharacterized protein OS=Psych...    36   1.1  
tr|O17031|O17031_CAEEL Putative uncharacterized protein T15B7.8 ...    34   3.3  
tr|Q883A6|Q883A6_PSESM Hydrolase, carbon-nitrogen family OS=Pseu...    34   4.3  
tr|Q4ZU98|Q4ZU98_PSEU2 Nitrilase/cyanide hydratase and apolipopr...    33   7.3  
tr|B6AEQ8|B6AEQ8_9CRYT Protein phosphatase 2C, putative OS=Crypt...    33   9.5  

>tr|A5WG91|A5WG91_PSYWF Putative uncharacterized protein
           OS=Psychrobacter sp. (strain PRwf-1) GN=PsycPRwf_1742
           PE=4 SV=1
          Length = 160

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 27/81 (33%), Positives = 39/81 (48%)
 Frame = -1

Query: 245 IQKSKLRYSTPDLNLNPEYFLDLTSPHAHWKKTEQYPIMTDW*LAAFSS*PIHLPLLHNP 66
           I+ SKL   TPD +L     L  ++  A    T Q P  T   LAAFSS  + +  + NP
Sbjct: 46  IKPSKLYAKTPDTDLLAIQTLYSSNQSASNDLTPQQPSST---LAAFSSKDVQVGSISNP 102

Query: 65  DIPVLFQSQRHPVGPPKCHLH 3
           D P+   +  H +   + +LH
Sbjct: 103 DAPLSAPTHAHGIFATQPNLH 123


>tr|O17031|O17031_CAEEL Putative uncharacterized protein T15B7.8
           OS=Caenorhabditis elegans GN=T15B7.8 PE=2 SV=1
          Length = 299

 Score = 34.3 bits (77), Expect = 3.3
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
 Frame = -1

Query: 404 DNAGIKPVVKPAQTVENIPPLLS--LNCSFSLGRLVVFYTLQNPQWNPQSHHLYAIQKSK 231
           + A ++ +   + T E + P +S  LNC FS+  LV+   L    +N  S +  +I++ K
Sbjct: 5   ERAKVQSIAFISHTYETLIPRMSRLLNCKFSILALVMIICLTPLYFNYNSENTSSIEEIK 64

Query: 230 LRYSTPDLNLNPE 192
           L  S P   +N E
Sbjct: 65  LNSSIPVSEINAE 77


>tr|Q883A6|Q883A6_PSESM Hydrolase, carbon-nitrogen family
           OS=Pseudomonas syringae pv. tomato GN=PSPTO2466 PE=4
           SV=1
          Length = 249

 Score = 33.9 bits (76), Expect = 4.3
 Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +1

Query: 19  GGPTGCLWLWNNTGMSGLWSR-GRWIGYEENAANHQSVIIGYC 144
           GGPTG    W + G SGLW   G WIG  ++A N   ++I  C
Sbjct: 199 GGPTGG---WQSAGRSGLWDEAGCWIGGLDDAGN--GLVIATC 236


>tr|Q4ZU98|Q4ZU98_PSEU2 Nitrilase/cyanide hydratase and
           apolipoprotein N-acyltransferase OS=Pseudomonas syringae
           pv. syringae (strain B728a) GN=Psyr_2231 PE=4 SV=1
          Length = 249

 Score = 33.1 bits (74), Expect = 7.3
 Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +1

Query: 19  GGPTGCLWLWNNTGMSGLWSR-GRWIG 96
           GGPTG    W + G SGLW   GRW+G
Sbjct: 199 GGPTGG---WQSAGRSGLWDEAGRWVG 222


>tr|B6AEQ8|B6AEQ8_9CRYT Protein phosphatase 2C, putative
           OS=Cryptosporidium muris RN66 GN=CMU_013500 PE=4 SV=1
          Length = 524

 Score = 32.7 bits (73), Expect = 9.5
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 152 SSNEHVVRSSQGSTQDLGSNQVSNTSVCSFVLHRDDG 262
           SS+E+ +      +Q + SN + N+S CSFV H   G
Sbjct: 275 SSHENEISCQHDCSQHISSNSICNSSFCSFVKHISSG 311