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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920301
Clone id YMU001_000135_D09
Library
Length 356
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000135_D09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GCTAATGATTTTCAATATATGCAGTGCTGCAGATAATCAGGAACCGAAGTCGTTCTGTCA
CATAGATGTTTCTCAAGCGTATGTTGCTTTCCCTGTGGGAGACACTGTGAAATTGCTCCA
GTTACTGTTTCTAAGTTTCCATTTGCTTATGCGATCGGCCTCTCAATGGTCAAGGATACA
GATGTACCACCTGCTCAAGAACAATTTTCAAAAAATGCAATATTAGCAATTGACAATGCT
TCCTTGGTCTCATTGACGAGCCTCCTTGCTATTGAATGTTCGCATATTACAAGTTGGGCC
TTTGAGCCTTCAATAGGCAATGTATCAGCTTGAAGGTGATCAAGTATGGTGGACTT
■■Homology search results ■■ -
sp_hit_id P13678
Definition sp|P13678|KPC3_DROME Protein kinase C OS=Drosophila melanogaster
Align length 32
Score (bit) 31.6
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920301|Adiantum capillus-veneris mRNA, clone:
YMU001_000135_D09.
         (356 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P13678|KPC3_DROME Protein kinase C OS=Drosophila melanogaster...    32   1.3  
sp|Q54XU5|DCTN5_DICDI Dynactin subunit 5 OS=Dictyostelium discoi...    31   1.7  
sp|P34722|KPC1_CAEEL Protein kinase C-like 1 OS=Caenorhabditis e...    31   2.2  
sp|Q9NHV9|VAV_DROME Protein vav OS=Drosophila melanogaster GN=va...    30   2.9  
sp|P09215|KPCD_RAT Protein kinase C delta type OS=Rattus norvegi...    30   3.8  
sp|P28867|KPCD_MOUSE Protein kinase C delta type OS=Mus musculus...    30   3.8  
sp|Q05655|KPCD_HUMAN Protein kinase C delta type OS=Homo sapiens...    30   3.8  
sp|Q5PU49|KPCD_CANFA Protein kinase C delta type OS=Canis famili...    30   3.8  
sp|Q9WTQ0|KPCT_RAT Protein kinase C theta type OS=Rattus norvegi...    30   5.0  
sp|Q02111|KPCT_MOUSE Protein kinase C theta type OS=Mus musculus...    30   5.0  
sp|Q04759|KPCT_HUMAN Protein kinase C theta type OS=Homo sapiens...    30   5.0  
sp|Q45FX5|VAV_CAEEL Protein vav-1 OS=Caenorhabditis elegans GN=v...    29   8.5  

>sp|P13678|KPC3_DROME Protein kinase C OS=Drosophila melanogaster
           GN=Pkc98E PE=1 SV=1
          Length = 634

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 171 QGYRCTTCSRTIFKKCNISN*QCFLGLIDEPP 266
           QGY+C  C+  + KKC++S      G+ DE P
Sbjct: 98  QGYQCQVCTLVVHKKCHLSVVSKCPGMRDEQP 129


>sp|Q54XU5|DCTN5_DICDI Dynactin subunit 5 OS=Dictyostelium
           discoideum GN=dynE PE=3 SV=1
          Length = 198

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 19/58 (32%), Positives = 22/58 (37%)
 Frame = +1

Query: 40  GTEVVLSHRCFSSVCCFPCGRHCEIAPVTVSKFPFAYAIGLSMVKDTDVPPAQEQFSK 213
           G   ++S RC    CC        I P      PF Y  G   V   D+P   EQF K
Sbjct: 111 GNNCIISKRCILKDCCIIADN--TILPPDTVVPPFTYYSGTPGVYKEDLPDCIEQFQK 166


>sp|P34722|KPC1_CAEEL Protein kinase C-like 1 OS=Caenorhabditis
           elegans GN=tpa-1 PE=2 SV=2
          Length = 704

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 162 LNGQGYRCTTCSRTIFKKCN 221
           LN QGY+C  CS  + KKC+
Sbjct: 189 LNKQGYQCQLCSAAVHKKCH 208


>sp|Q9NHV9|VAV_DROME Protein vav OS=Drosophila melanogaster GN=vav
           PE=2 SV=2
          Length = 793

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = +3

Query: 150 CDRPLNG---QGYRCTTCSRTIFKKCNISN*QCFLGLIDEPP 266
           C + L G   QGYRC  C  ++ K C  S  +C    +  PP
Sbjct: 569 CSKFLKGRIHQGYRCKVCQISVHKGCISSTGRCKQNPVSVPP 610


>sp|P09215|KPCD_RAT Protein kinase C delta type OS=Rattus norvegicus
           GN=Prkcd PE=1 SV=1
          Length = 673

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 162 LNGQGYRCTTCSRTIFKKC 218
           LN QGY+C  C+  I KKC
Sbjct: 182 LNKQGYKCRQCNAAIHKKC 200


>sp|P28867|KPCD_MOUSE Protein kinase C delta type OS=Mus musculus
           GN=Prkcd PE=1 SV=3
          Length = 674

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 162 LNGQGYRCTTCSRTIFKKC 218
           LN QGY+C  C+  I KKC
Sbjct: 182 LNKQGYKCRQCNAAIHKKC 200


>sp|Q05655|KPCD_HUMAN Protein kinase C delta type OS=Homo sapiens
           GN=PRKCD PE=1 SV=2
          Length = 676

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 162 LNGQGYRCTTCSRTIFKKC 218
           LN QGY+C  C+  I KKC
Sbjct: 182 LNKQGYKCRQCNAAIHKKC 200


>sp|Q5PU49|KPCD_CANFA Protein kinase C delta type OS=Canis
           familiaris GN=PRKCD PE=2 SV=1
          Length = 674

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 162 LNGQGYRCTTCSRTIFKKC 218
           LN QGY+C  C+  I KKC
Sbjct: 182 LNKQGYKCRQCNAAIHKKC 200


>sp|Q9WTQ0|KPCT_RAT Protein kinase C theta type OS=Rattus norvegicus
           GN=Prkcq PE=2 SV=2
          Length = 707

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 162 LNGQGYRCTTCSRTIFKKC 218
           LN QGY+C  C+  I KKC
Sbjct: 183 LNKQGYQCRRCNAAIHKKC 201


>sp|Q02111|KPCT_MOUSE Protein kinase C theta type OS=Mus musculus
           GN=Prkcq PE=1 SV=1
          Length = 707

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 162 LNGQGYRCTTCSRTIFKKC 218
           LN QGY+C  C+  I KKC
Sbjct: 183 LNKQGYQCRQCNAAIHKKC 201
tr_hit_id A9BS08
Definition tr|A9BS08|A9BS08_DELAS Fibronectin type III domain protein OS=Delftia acidovorans (strain DSM 14801 / SPH-1)
Align length 35
Score (bit) 33.1
E-value 7.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920301|Adiantum capillus-veneris mRNA, clone:
YMU001_000135_D09.
         (356 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9BS08|A9BS08_DELAS Fibronectin type III domain protein OS=De...    33   7.2  

>tr|A9BS08|A9BS08_DELAS Fibronectin type III domain protein
           OS=Delftia acidovorans (strain DSM 14801 / SPH-1)
           GN=Daci_0772 PE=4 SV=1
          Length = 497

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 18/35 (51%), Positives = 25/35 (71%)
 Frame = -1

Query: 194 AGGTSVSLTIERPIA*ANGNLETVTGAISQCLPQG 90
           A GT+V LT + P+A   G  +TVTG ++QC+PQG
Sbjct: 238 AQGTAVQLTFD-PVASIPG--QTVTGYVAQCVPQG 269