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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920304
Clone id YMU001_000135_E02
Library
Length 322
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000135_E02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTTTTTTTTTAAAGAAATCCAAAAATTCCTCAAGCTGTACATTCAGCCTCTAAACATAGG
CATAAATGAAGTACCTTGTCAGTTGCAGGGACTCCTCCCTCTCGCTCAATGATATCATCA
TGTGTAAAAAAATGTCCATTGTATTGTTGCAGCCATTATCCACAGGCTTAAAATCTAGGG
TGCCCAGAGCACCTCTGCAGTGATATTCGCAACTTCTGTGTCATCCTCCAAAACCTCTCT
GATCTGCCTCAGAAACTCTTGCTTTAAAGCCCTCCTCTCTCTTTTTCTCAAGCCAGTGCC
AATCGACAAATGCAATGCAAAT
■■Homology search results ■■ -
sp_hit_id Q0AAM1
Definition sp|Q0AAM1|IHFA_ALHEH Integration host factor subunit alpha OS=Alkalilimnicola ehrlichei (strain MLHE-1)
Align length 28
Score (bit) 29.6
E-value 4.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920304|Adiantum capillus-veneris mRNA, clone:
YMU001_000135_E02.
         (312 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q0AAM1|IHFA_ALHEH Integration host factor subunit alpha OS=Al...    30   4.9  
sp|Q4ZUG1|IHFA_PSEU2 Integration host factor subunit alpha OS=Ps...    29   6.4  
sp|Q883H6|IHFA_PSESM Integration host factor subunit alpha OS=Ps...    29   6.4  
sp|Q3KEX6|IHFA_PSEPF Integration host factor subunit alpha OS=Ps...    29   6.4  
sp|Q4KEV8|IHFA_PSEF5 Integration host factor subunit alpha OS=Ps...    29   6.4  
sp|Q1IC09|IHFA_PSEE4 Integration host factor subunit alpha OS=Ps...    29   6.4  
sp|Q48JR7|IHFA_PSE14 Integration host factor subunit alpha OS=Ps...    29   6.4  

>sp|Q0AAM1|IHFA_ALHEH Integration host factor subunit alpha
           OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=ihfA
           PE=3 SV=1
          Length = 101

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 284 GLRKRERRALKQEFLRQIREVLEDDTEV 201
           GL KRE + L + F  +IR+ LED   V
Sbjct: 17  GLNKREAKELVESFFEEIRQALEDGVPV 44


>sp|Q4ZUG1|IHFA_PSEU2 Integration host factor subunit alpha
           OS=Pseudomonas syringae pv. syringae (strain B728a)
           GN=ihfA PE=3 SV=1
          Length = 100

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 284 GLRKRERRALKQEFLRQIREVLEDDTEV 201
           GL KRE + L + F  +IR  LED+ +V
Sbjct: 18  GLNKREAKELVELFFEEIRHALEDNEQV 45


>sp|Q883H6|IHFA_PSESM Integration host factor subunit alpha
           OS=Pseudomonas syringae pv. tomato GN=ihfA PE=3 SV=1
          Length = 100

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 284 GLRKRERRALKQEFLRQIREVLEDDTEV 201
           GL KRE + L + F  +IR  LED+ +V
Sbjct: 18  GLNKREAKELVELFFEEIRHALEDNEQV 45


>sp|Q3KEX6|IHFA_PSEPF Integration host factor subunit alpha
           OS=Pseudomonas fluorescens (strain Pf0-1) GN=ihfA PE=3
           SV=1
          Length = 100

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 284 GLRKRERRALKQEFLRQIREVLEDDTEV 201
           GL KRE + L + F  +IR  LED+ +V
Sbjct: 18  GLNKREAKELVELFFEEIRHALEDNEQV 45


>sp|Q4KEV8|IHFA_PSEF5 Integration host factor subunit alpha
           OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477)
           GN=ihfA PE=3 SV=1
          Length = 100

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 284 GLRKRERRALKQEFLRQIREVLEDDTEV 201
           GL KRE + L + F  +IR  LED+ +V
Sbjct: 18  GLNKREAKELVELFFEEIRHALEDNEQV 45


>sp|Q1IC09|IHFA_PSEE4 Integration host factor subunit alpha
           OS=Pseudomonas entomophila (strain L48) GN=ihfA PE=3
           SV=1
          Length = 100

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 284 GLRKRERRALKQEFLRQIREVLEDDTEV 201
           GL KRE + L + F  +IR  LED+ +V
Sbjct: 18  GLNKREAKELVELFFEEIRHALEDNEQV 45


>sp|Q48JR7|IHFA_PSE14 Integration host factor subunit alpha
           OS=Pseudomonas syringae pv. phaseolicola (strain 1448A /
           Race 6) GN=ihfA PE=3 SV=1
          Length = 100

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 284 GLRKRERRALKQEFLRQIREVLEDDTEV 201
           GL KRE + L + F  +IR  LED+ +V
Sbjct: 18  GLNKREAKELVELFFEEIRHALEDNEQV 45
tr_hit_id A7QTM7
Definition tr|A7QTM7|A7QTM7_VITVI Chromosome chr11 scaffold_170, whole genome shotgun sequence OS=Vitis vinifera
Align length 46
Score (bit) 55.8
E-value 1.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920304|Adiantum capillus-veneris mRNA, clone:
YMU001_000135_E02.
         (312 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7QTM7|A7QTM7_VITVI Chromosome chr11 scaffold_170, whole geno...    56   1e-06
tr|Q402G4|Q402G4_SOYBN Putative uncharacterized protein GmTDF-5 ...    51   3e-05
tr|A2XAP3|A2XAP3_ORYSI Putative uncharacterized protein OS=Oryza...    47   4e-04
tr|A5APZ1|A5APZ1_VITVI Putative uncharacterized protein OS=Vitis...    47   6e-04
tr|Q69SK1|Q69SK1_ORYSJ Putative uncharacterized protein P0689B12...    45   0.002
tr|A3ACE0|A3ACE0_ORYSJ Putative uncharacterized protein OS=Oryza...    45   0.002
tr|A7P637|A7P637_VITVI Chromosome chr4 scaffold_6, whole genome ...    42   0.015
tr|Q5KAT7|Q5KAT7_CRYNE Putative uncharacterized protein OS=Crypt...    33   9.3  
tr|Q55KN7|Q55KN7_CRYNE Putative uncharacterized protein OS=Crypt...    33   9.3  

>tr|A7QTM7|A7QTM7_VITVI Chromosome chr11 scaffold_170, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00006413001
           PE=4 SV=1
          Length = 400

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 26/46 (56%), Positives = 31/46 (67%)
 Frame = -2

Query: 311 FALHLSIGTGLRKRERRALKQEFLRQIREVLEDDTEVANITAEVLW 174
           FA+ L +G GLR+RE+RA KQE L  +RE    D E A I AEVLW
Sbjct: 351 FAVQLEVGEGLRQREKRAFKQEILGLVREACASDAEAATIVAEVLW 396


>tr|Q402G4|Q402G4_SOYBN Putative uncharacterized protein GmTDF-5
           OS=Glycine max GN=GmTDF-5 PE=2 SV=1
          Length = 367

 Score = 50.8 bits (120), Expect = 3e-05
 Identities = 23/46 (50%), Positives = 31/46 (67%)
 Frame = -2

Query: 311 FALHLSIGTGLRKRERRALKQEFLRQIREVLEDDTEVANITAEVLW 174
           FA+ L +G GLR+RE+RA K E L ++R+    + E A I AEVLW
Sbjct: 318 FAVQLEVGEGLRQREKRAFKPEILIRVRDASVSEAEAATIAAEVLW 363


>tr|A2XAP3|A2XAP3_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_09322 PE=4 SV=1
          Length = 206

 Score = 47.4 bits (111), Expect = 4e-04
 Identities = 21/46 (45%), Positives = 30/46 (65%)
 Frame = -2

Query: 311 FALHLSIGTGLRKRERRALKQEFLRQIREVLEDDTEVANITAEVLW 174
           FA+ + +G GL +RE+RA K E LR++RE      E A + A+VLW
Sbjct: 157 FAVQVEVGEGLSQREKRAAKLEILRRVREAAVSPAEEATVLADVLW 202


>tr|A5APZ1|A5APZ1_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_030235 PE=4 SV=1
          Length = 495

 Score = 46.6 bits (109), Expect = 6e-04
 Identities = 22/44 (50%), Positives = 28/44 (63%)
 Frame = -2

Query: 311 FALHLSIGTGLRKRERRALKQEFLRQIREVLEDDTEVANITAEV 180
           FA+ L +G GLR+RE+R  KQE L  +RE    D E A I AE+
Sbjct: 351 FAVQLEVGEGLRQREKRXFKQEILGLVREACASDAEAAXIVAEL 394


>tr|Q69SK1|Q69SK1_ORYSJ Putative uncharacterized protein P0689B12.18
           OS=Oryza sativa subsp. japonica GN=P0689B12.18 PE=4 SV=1
          Length = 405

 Score = 44.7 bits (104), Expect = 0.002
 Identities = 20/46 (43%), Positives = 29/46 (63%)
 Frame = -2

Query: 311 FALHLSIGTGLRKRERRALKQEFLRQIREVLEDDTEVANITAEVLW 174
           FA+ + +G GL +RE+ A K E LR++RE      E A + A+VLW
Sbjct: 356 FAVQVEVGEGLSQREKLAAKLEILRRVREAAVSPAEEATVLADVLW 401


>tr|A3ACE0|A3ACE0_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_008462 PE=4 SV=1
          Length = 246

 Score = 44.7 bits (104), Expect = 0.002
 Identities = 20/46 (43%), Positives = 29/46 (63%)
 Frame = -2

Query: 311 FALHLSIGTGLRKRERRALKQEFLRQIREVLEDDTEVANITAEVLW 174
           FA+ + +G GL +RE+ A K E LR++RE      E A + A+VLW
Sbjct: 197 FAVQVEVGEGLSQREKLAAKLEILRRVREAAVSPAEEATVLADVLW 242


>tr|A7P637|A7P637_VITVI Chromosome chr4 scaffold_6, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00032767001
           PE=4 SV=1
          Length = 394

 Score = 42.0 bits (97), Expect = 0.015
 Identities = 19/43 (44%), Positives = 28/43 (65%)
 Frame = -2

Query: 311 FALHLSIGTGLRKRERRALKQEFLRQIREVLEDDTEVANITAE 183
           FA+ L +G GLR+RE+R  K E L++++E    + E A I AE
Sbjct: 332 FAVQLEVGEGLRQREKREFKLEVLKRVKESSVSEAEAATIVAE 374


>tr|Q5KAT7|Q5KAT7_CRYNE Putative uncharacterized protein
           OS=Cryptococcus neoformans GN=CNJ00550 PE=4 SV=1
          Length = 548

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
 Frame = -2

Query: 284 GLRKRERRALKQEFLRQIREVLE---DDTEVANITAEVLWAP*ILSLWIMAATIQWTFFY 114
           GLR+  RR    EFLR++ E  E   D  EV  +  ++ W      L++ A  + + F+Y
Sbjct: 66  GLRRLLRRNPSAEFLREVAEANEHELDPVEVKKVERKLFW------LFVPALAVDYAFYY 119


>tr|Q55KN7|Q55KN7_CRYNE Putative uncharacterized protein
           OS=Cryptococcus neoformans GN=CNBJ2960 PE=4 SV=1
          Length = 541

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
 Frame = -2

Query: 284 GLRKRERRALKQEFLRQIREVLE---DDTEVANITAEVLWAP*ILSLWIMAATIQWTFFY 114
           GLR+  RR    EFLR++ E  E   D  EV  +  ++ W      L++ A  + + F+Y
Sbjct: 59  GLRRLLRRNPSAEFLREVAEANEHELDPVEVKKVERKLFW------LFVPALAVDYAFYY 112