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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920305
Clone id YMU001_000135_E03
Library
Length 413
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000135_E03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GTATGAGGCAGATGGTGTATAACATTCCTCTCTGACCATAGGCGGCGTAGAAAACTTTGT
GTTGATGATATCATGAGGTACTGAGGGTTTGCTGAGTATCATACTGGCCATCATAATAAA
CTGTTGCTGCCCTTTTTGAGTCCACCCTTAGTGGCACCAGGGGCCTAAAGTCGCCGTAAT
GCTCATCATTGGCAAGCTTTGCTTGCATTATCAAGGTTACATATTGACACGAGGACTTTC
ATATCATGCCACTTGAGGAGGACGTCCTTTTGGGAGGCCTTGGCACCACAAGAATGATGT
TGTGGTTCTATCTAAGGCAAGGAAATTCCAATTAAAGACTAGTAAAAGCAAAGATGTGGT
TGTTGATGTTAAATTGGAGGGTCTGACGGTGCTAGCATGGATTCAACGAAAGT
■■Homology search results ■■ -
sp_hit_id Q89VC7
Definition sp|Q89VC7|XYLA_BRAJA Xylose isomerase OS=Bradyrhizobium japonicum
Align length 22
Score (bit) 29.3
E-value 6.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920305|Adiantum capillus-veneris mRNA, clone:
YMU001_000135_E03.
         (413 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q89VC7|XYLA_BRAJA Xylose isomerase OS=Bradyrhizobium japonicu...    29   6.5  
sp|P45815|CRF1_YARLI Copper resistance protein CRF1 OS=Yarrowia ...    29   8.4  

>sp|Q89VC7|XYLA_BRAJA Xylose isomerase OS=Bradyrhizobium japonicum
           GN=xylA PE=3 SV=2
          Length = 438

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 257 GGRPFGRPWHHKNDVVVLSKAR 322
           GG  F RPWHH  D +  ++A+
Sbjct: 62  GGETFLRPWHHGTDAMAQARAK 83


>sp|P45815|CRF1_YARLI Copper resistance protein CRF1 OS=Yarrowia
           lipolytica GN=CRF1 PE=4 SV=1
          Length = 411

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = -3

Query: 138 QKGQQQFIMMASMILSKPSVPHDIINTKFSTPPMVREECYTPSASY 1
           Q+ QQQ    AS IL +P +P  +  T  +TPP+      TP+ S+
Sbjct: 131 QQQQQQPQPQASPILQQPQMPTPVHTTNVTTPPVA-----TPTHSH 171
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920305|Adiantum capillus-veneris mRNA, clone:
YMU001_000135_E03.
         (413 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******