BP920308
Clone id YMU001_000135_E06
Library
Length 536
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000135_E06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
GAGTTTTATGACTGTTGTGACATTAAGAGGGAATGGATTTCTCCCTCCACTCCTACGTGG
AAGCGTGTTGCTAAGCGTATTAATCATTTGATGCAAAAGAAGATTTTGTAGCATGCTGTT
CAATTGAGGATCTTCACATGGATTTCAGGTGGATGTTGTCCAAACAATTGTCAAAAGAAT
AAATTGATCATCTAGCAAGGCTTTAATGGGAAGGTTTCAAGAATATTTCTTTTGGAAATC
ACCATCTTATGTTGCCGTATTCCCAAATGGCAAAGACATAAGGAGTAAGCTTAACCAGTA
GTCAAGGGAGTGCATATTTCTTGGATATGTCGAGTCTGGCTAGATGAGATACCATTAAGG
GATCCAGAGGCCAGGAAGAGTGTACACAGTCATGACGTTGTTTTAACCAAGACAAAATGC
ATAAGAAATGGATTCTTTATATAAGTGCAACTTGGGACTTATCATCTTTATTAGAAGGAA
AACATGCTTGGCATGCAAATAAGCCTACAAACTGAAGATCACACAAGGTGATGCTA
■■Homology search results ■■ -
sp_hit_id Q97KC9
Definition sp|Q97KC9|SYE_CLOAB Glutamyl-tRNA synthetase OS=Clostridium acetobutylicum
Align length 50
Score (bit) 30.8
E-value 4.0
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920308|Adiantum capillus-veneris mRNA, clone:
YMU001_000135_E06.
(520 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q97KC9|SYE_CLOAB Glutamyl-tRNA synthetase OS=Clostridium acet... 31 4.0

>sp|Q97KC9|SYE_CLOAB Glutamyl-tRNA synthetase OS=Clostridium
acetobutylicum GN=gltX PE=3 SV=1
Length = 485

Score = 30.8 bits (68), Expect = 4.0
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = +1

Query: 175 SSKALMGRFQEYFFWKSPSYVAVFPNGKDIRSKLNQ*SRECIFLGYVESG 324
SS R E F W P YV P KD SKL++ + + F +E G
Sbjct: 221 SSAPKYNRLYEAFGWNVPIYVHCPPIMKDAHSKLSKRNGDASFQDLIEKG 270


tr_hit_id Q081A2
Definition tr|Q081A2|Q081A2_SHEFN Peptidase S16, lon domain protein OS=Shewanella frigidimarina (strain NCIMB 400)
Align length 33
Score (bit) 35.4
E-value 1.7
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920308|Adiantum capillus-veneris mRNA, clone:
YMU001_000135_E06.
(520 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q081A2|Q081A2_SHEFN Peptidase S16, lon domain protein OS=Shew... 35 1.7
tr|B8YLY4|B8YLY4_MEDTR Gag-Pol polyprotein OS=Medicago truncatul... 30 4.1
tr|B8YLY3|B8YLY3_MEDTR Gag-Pol polyprotein OS=Medicago truncatul... 30 4.1
tr|B4P346|B4P346_DROYA GE18644 OS=Drosophila yakuba GN=GE18644 P... 33 6.5
tr|A5B9V5|A5B9V5_VITVI Putative uncharacterized protein OS=Vitis... 31 7.3
tr|A5ATZ8|A5ATZ8_VITVI Putative uncharacterized protein OS=Vitis... 33 8.5
tr|Q9VK02|Q9VK02_DROME CG16825 OS=Drosophila melanogaster GN=CG1... 33 8.5
tr|B4Q4R5|B4Q4R5_DROSI GD23886 OS=Drosophila simulans GN=GD23886... 33 8.5
tr|B4IEJ4|B4IEJ4_DROSE GM10407 OS=Drosophila sechellia GN=GM1040... 33 8.5

>tr|Q081A2|Q081A2_SHEFN Peptidase S16, lon domain protein
OS=Shewanella frigidimarina (strain NCIMB 400)
GN=Sfri_2317 PE=4 SV=1
Length = 196

Score = 35.4 bits (80), Expect = 1.7
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +3

Query: 300 ISWICRVWLDEIPLRDPEARKSVHSHDVVLTKT 398
I+W+C+ WL+ IPL E + ++SHD L K+
Sbjct: 157 IAWVCQRWLEIIPLSAKEKYQCINSHDHQLAKS 189


>tr|B8YLY4|B8YLY4_MEDTR Gag-Pol polyprotein OS=Medicago truncatula
PE=4 SV=1
Length = 1305

Score = 30.4 bits (67), Expect(2) = 4.1
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 9/85 (10%)
Frame = +1

Query: 94 SMLFN*GSSHGFQVDVVQTIVKRIN*SSSKAL-MGRFQEYFFWKSPSYVAVFPNGKDI-- 264
+ML G + F + V+T IN S S A+ + E + K Y ++ G +
Sbjct: 598 AMLKTAGMAKSFWAEAVKTACYVINRSPSTAIDLKTPMEMWKGKPVDYSSLHVFGCPVYV 657

Query: 265 ------RSKLNQ*SRECIFLGYVES 321
R+KL+ SR+CIFLGY ++
Sbjct: 658 MYNSQERTKLDPKSRKCIFLGYADN 682



Score = 22.3 bits (46), Expect(2) = 4.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3

Query: 339 LRDPEARKSVHSHDVVLTKTK 401
L DP ARK V S DVV + +
Sbjct: 688 LWDPTARKVVVSRDVVFAENE 708


>tr|B8YLY3|B8YLY3_MEDTR Gag-Pol polyprotein OS=Medicago truncatula
PE=4 SV=1
Length = 1305

Score = 30.4 bits (67), Expect(2) = 4.1
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 9/85 (10%)
Frame = +1

Query: 94 SMLFN*GSSHGFQVDVVQTIVKRIN*SSSKAL-MGRFQEYFFWKSPSYVAVFPNGKDI-- 264
+ML G + F + V+T IN S S A+ + E + K Y ++ G +
Sbjct: 598 AMLKTAGMAKSFWAEAVKTACYVINRSPSTAIDLKTPMEMWKGKPVDYSSLHVFGCPVYV 657

Query: 265 ------RSKLNQ*SRECIFLGYVES 321
R+KL+ SR+CIFLGY ++
Sbjct: 658 MYNSQERTKLDPKSRKCIFLGYADN 682



Score = 22.3 bits (46), Expect(2) = 4.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3

Query: 339 LRDPEARKSVHSHDVVLTKTK 401
L DP ARK V S DVV + +
Sbjct: 688 LWDPTARKVVVSRDVVFAENE 708


>tr|B4P346|B4P346_DROYA GE18644 OS=Drosophila yakuba GN=GE18644 PE=4
SV=1
Length = 279

Score = 33.5 bits (75), Expect = 6.5
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = -3

Query: 467 VFLLIKMISPKLHLYKESISYAFCLG*NNVMTVYTLPGLWIP 342
+F + ++ LH+ ++ +++ F L V+ VYTL GLW+P
Sbjct: 136 IFESLTLLVVCLHILEQDLTWPFVLIGMGVLVVYTLLGLWVP 177


>tr|A5B9V5|A5B9V5_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_040103 PE=4 SV=1
Length = 473

Score = 31.2 bits (69), Expect(2) = 7.3
Identities = 17/32 (53%), Positives = 24/32 (75%)
Frame = +1

Query: 217 WKSPSYVAVFPNGKDIRSKLNQ*SRECIFLGY 312
++ P+YV + PN + RSKL+ SR+CIFLGY
Sbjct: 54 FECPAYVHI-PNEE--RSKLDAKSRQCIFLGY 82



Score = 20.8 bits (42), Expect(2) = 7.3
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Frame = +3

Query: 339 LRDPEARKSVHSHDVVLTK---TKCIRNG 416
L DP+A K V S DVV + +C + G
Sbjct: 91 LWDPKANKVVISRDVVFDEKPMLQCTQKG 119


>tr|A5ATZ8|A5ATZ8_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_000227 PE=4 SV=1
Length = 605

Score = 33.1 bits (74), Expect = 8.5
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 12/81 (14%)
Frame = +1

Query: 106 N*GSSHGFQVDVVQTIVKRIN*SSSKALMGR------------FQEYFFWKSPSYVAVFP 249
N G + F V+ V IN S L G+ + + P+YV + P
Sbjct: 111 NVGLENKFWVEAVNMACYLINRSPRATLHGKVVDEVWIGSPVDYSSLRLFGCPTYVHI-P 169

Query: 250 NGKDIRSKLNQ*SRECIFLGY 312
N + RSKL++ SR+CIFLGY
Sbjct: 170 N--EDRSKLDEKSRQCIFLGY 188


>tr|Q9VK02|Q9VK02_DROME CG16825 OS=Drosophila melanogaster
GN=CG16825 PE=2 SV=2
Length = 281

Score = 33.1 bits (74), Expect = 8.5
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = -3

Query: 467 VFLLIKMISPKLHLYKESISYAFCLG*NNVMTVYTLPGLWIP 342
+F + ++ LH+ ++ +++ F L V+ VYTL GLW+P
Sbjct: 138 IFESLTLLVVCLHILEQDLTWPFVLIGIGVLVVYTLLGLWVP 179


>tr|B4Q4R5|B4Q4R5_DROSI GD23886 OS=Drosophila simulans GN=GD23886
PE=4 SV=1
Length = 281

Score = 33.1 bits (74), Expect = 8.5
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = -3

Query: 467 VFLLIKMISPKLHLYKESISYAFCLG*NNVMTVYTLPGLWIP 342
+F + ++ LH+ ++ +++ F L V+ VYTL GLW+P
Sbjct: 138 IFESLTLLVVCLHILEQDLTWPFVLIGIGVLVVYTLLGLWVP 179


>tr|B4IEJ4|B4IEJ4_DROSE GM10407 OS=Drosophila sechellia GN=GM10407
PE=4 SV=1
Length = 281

Score = 33.1 bits (74), Expect = 8.5
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = -3

Query: 467 VFLLIKMISPKLHLYKESISYAFCLG*NNVMTVYTLPGLWIP 342
+F + ++ LH+ ++ +++ F L V+ VYTL GLW+P
Sbjct: 138 IFESLTLLVVCLHILEQDLTWPFVLIGIGVLVVYTLLGLWVP 179