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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920320
Clone id YMU001_000135_F09
Library
Length 495
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000135_F09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CACCTGATTGACCTTCTCACATGACTCCCATGTCAACCAACCTGGGTAACGCAGGCATTG
AAGCATGTTACATCGCAATTTGCTCCAGCTAAGGCTCACACACCAATCCCAACAAAGAAT
AATTCACTGTGTCTGGTCAACCTGAAGGCTAGGGGCATCAGTCTTGCTTGGCGATGGGCT
CCTACTGCCAGAACCACTATCTGAATCCGAATCCGAATCCGAGATCCGAATCACTATCGC
TACTTGAATCTGAATCACTGCTGGAATCTGAATCTGATCCCTCCTTAGGAGCAGCTTTCT
CTTCACCTATCTTCCCAGCTACTACCTTATCCGCTGGCTTGCTTCTAGGTGCAACTGGCT
TTGTGGGTTAGTTTGCTCTCTTCAAAATGCTCTTGCCACGTCGATAAACCTCCCACAGTG
TCGCATTGTCAAATGTATCTGGGTCGATTTCAATCTCATGACCATTAGGACCCAAATTCG
CATTCCTCTCTTTCA
■■Homology search results ■■ -
sp_hit_id Q5UW69
Definition sp|Q5UW69|PHNC2_HALMA Phosphonates import ATP-binding protein phnC 2 OS=Haloarcula marismortui
Align length 42
Score (bit) 30.0
E-value 6.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920320|Adiantum capillus-veneris mRNA, clone:
YMU001_000135_F09.
         (495 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5UW69|PHNC2_HALMA Phosphonates import ATP-binding protein ph...    30   6.0  
sp|Q8BQ33|CO042_MOUSE Uncharacterized protein C15orf42 homolog O...    30   6.1  
sp|Q6FKA5|MED14_CANGA Mediator of RNA polymerase II transcriptio...    30   7.9  
sp|P97310|MCM2_MOUSE DNA replication licensing factor MCM2 OS=Mu...    30   7.9  

>sp|Q5UW69|PHNC2_HALMA Phosphonates import ATP-binding protein phnC
           2 OS=Haloarcula marismortui GN=phnC2 PE=3 SV=1
          Length = 271

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 18/42 (42%), Positives = 22/42 (52%)
 Frame = -3

Query: 442 PDTFDNATLWEVYRRGKSILKRAN*PTKPVAPRSKPADKVVA 317
           PD  D A   E+YR G+SI  R     +P A  S  AD V+A
Sbjct: 230 PDDLDQAARDEIYRGGESIADR----EEPSAGNSTDADDVIA 267


>sp|Q8BQ33|CO042_MOUSE Uncharacterized protein C15orf42 homolog
           OS=Mus musculus PE=2 SV=2
          Length = 1889

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = +1

Query: 28  PCQPTWVTQALKHVTSQFAPAKAHTPIPTKNNS 126
           PC P WV Q L H TS ++PA      P  N S
Sbjct: 473 PCVPEWVQQELSH-TSSWSPALVEKWFPFSNAS 504


>sp|Q6FKA5|MED14_CANGA Mediator of RNA polymerase II transcription
           subunit 14 OS=Candida glabrata GN=RGR1 PE=3 SV=1
          Length = 1037

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 323 YLIRWLASRCNWLCGLVCSLQNALATSIN 409
           ++IR +  +  W+C  V  L N +ATS+N
Sbjct: 513 HIIRNMFDKTGWVCSKVIKLDNPIATSVN 541


>sp|P97310|MCM2_MOUSE DNA replication licensing factor MCM2 OS=Mus
           musculus GN=Mcm2 PE=1 SV=3
          Length = 904

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +2

Query: 311 LPSYYLIRWLASRCNWLCGLVCSLQNALATSINLPQCR 424
           LP   ++++  S+CN++ G  C  QN      + P+C+
Sbjct: 319 LPQLSMVKYNCSKCNFVLGPFCQSQNQEVKPGSCPECQ 356
tr_hit_id A9SEB7
Definition tr|A9SEB7|A9SEB7_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 31
Score (bit) 43.1
E-value 0.007
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920320|Adiantum capillus-veneris mRNA, clone:
YMU001_000135_F09.
         (495 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SEB7|A9SEB7_PHYPA Predicted protein (Fragment) OS=Physcomit...    43   0.007
tr|A9RJI5|A9RJI5_PHYPA Predicted protein OS=Physcomitrella paten...    43   0.007
tr|B8AAI9|B8AAI9_ORYSI Putative uncharacterized protein OS=Oryza...    38   0.23 
tr|A2ZQM4|A2ZQM4_ORYSJ Putative uncharacterized protein OS=Oryza...    38   0.23 
tr|Q9LSL2|Q9LSL2_ARATH Similarity to RING3 protein OS=Arabidopsi...    37   0.39 
tr|Q7Y214|Q7Y214_ARATH Putative uncharacterized protein At5g6563...    37   0.39 
tr|B4G138|B4G138_MAIZE Putative uncharacterized protein OS=Zea m...    37   0.51 
tr|Q0JPM7|Q0JPM7_ORYSJ Os01g0214300 protein (Fragment) OS=Oryza ...    36   1.1  
tr|Q9LXA7|Q9LXA7_ARATH Bromodomain protein-like OS=Arabidopsis t...    35   1.9  
tr|Q9AR00|Q9AR00_SOLLC PSTVd RNA-biding protein, Virp1 (PSTVd RN...    34   3.3  
tr|Q8RVV3|Q8RVV3_SOLLC Viroid RNA-binding protein (Fragment) OS=...    34   3.3  
tr|Q5K545|Q5K545_SOLTU Bromodomain-containing RNA-binding protei...    34   3.3  
tr|Q5K544|Q5K544_NICBE Bromodomain-containing RNA-binding protei...    34   3.3  
tr|Q5K543|Q5K543_NICBE Bromodomain-containing RNA-binding protei...    34   3.3  
tr|Q5K542|Q5K542_TOBAC Bromodomain-containing RNA-binding protei...    34   3.3  
tr|Q5K541|Q5K541_TOBAC Bromodomain-containing RNA-binding protei...    34   3.3  
tr|A1XX44|A1XX44_9MAGN Chloroplast bromodomain-containing protei...    34   3.3  
tr|Q9LMU8|Q9LMU8_ARATH F2H15.2 protein OS=Arabidopsis thaliana G...    34   4.3  
tr|Q93ZU2|Q93ZU2_ARATH Putative uncharacterized protein At1g1779...    34   4.3  
tr|Q8H1D7|Q8H1D7_ARATH Putative uncharacterized protein At1g1779...    34   4.3  
tr|Q39379|Q39379_BRAOL Non intermediate filament IFA binding pro...    34   4.3  
tr|B7FLR5|B7FLR5_MEDTR Putative uncharacterized protein (Fragmen...    34   4.3  
tr|A9TWZ4|A9TWZ4_PHYPA Predicted protein OS=Physcomitrella paten...    33   5.6  
tr|A9RJ79|A9RJ79_PHYPA Predicted protein OS=Physcomitrella paten...    33   5.6  
tr|B3RN78|B3RN78_TRIAD Putative uncharacterized protein (Fragmen...    33   5.6  
tr|A9RDL0|A9RDL0_PHYPA Predicted protein (Fragment) OS=Physcomit...    33   7.3  
tr|Q9S7T1|Q9S7T1_ARATH Putative uncharacterized protein T18K17.1...    33   9.5  
tr|Q0WSA6|Q0WSA6_ARATH Putative uncharacterized protein At1g7315...    33   9.5  
tr|Q4P7F7|Q4P7F7_USTMA Putative uncharacterized protein OS=Ustil...    33   9.5  

>tr|A9SEB7|A9SEB7_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_128382 PE=4 SV=1
          Length = 317

 Score = 43.1 bits (100), Expect = 0.007
 Identities = 19/31 (61%), Positives = 24/31 (77%)
 Frame = -3

Query: 493 KERNANLGPNGHEIEIDPDTFDNATLWEVYR 401
           K+RN +LG N  EIE+D D+FDN TLWE+ R
Sbjct: 272 KKRNPDLGQNEDEIEVDIDSFDNDTLWELDR 302


>tr|A9RJI5|A9RJI5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_66961 PE=4 SV=1
          Length = 694

 Score = 43.1 bits (100), Expect = 0.007
 Identities = 19/31 (61%), Positives = 24/31 (77%)
 Frame = -3

Query: 493 KERNANLGPNGHEIEIDPDTFDNATLWEVYR 401
           K+RN +LG N  EIE+D D+FDN TLWE+ R
Sbjct: 446 KKRNPDLGQNEDEIEVDIDSFDNDTLWELDR 476


>tr|B8AAI9|B8AAI9_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_00884 PE=4 SV=1
          Length = 512

 Score = 38.1 bits (87), Expect = 0.23
 Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
 Frame = -3

Query: 493 KERNANLGPNGHEIEIDPDTFDNATLWEVYR----RGKSILKRAN*PTKPVA 350
           K+RN +L  +  EIE+D D+FD  TLWE+ R      KSI K       PVA
Sbjct: 291 KKRNLSLSQHDDEIEVDIDSFDVETLWELDRFVTNYKKSISKNKRKAENPVA 342


>tr|A2ZQM4|A2ZQM4_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_000846 PE=4 SV=1
          Length = 563

 Score = 38.1 bits (87), Expect = 0.23
 Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
 Frame = -3

Query: 493 KERNANLGPNGHEIEIDPDTFDNATLWEVYR----RGKSILKRAN*PTKPVA 350
           K+RN +L  +  EIE+D D+FD  TLWE+ R      KSI K       PVA
Sbjct: 341 KKRNLSLSQHDDEIEVDIDSFDVETLWELDRFVTNYKKSISKNKRKAENPVA 392


>tr|Q9LSL2|Q9LSL2_ARATH Similarity to RING3 protein OS=Arabidopsis
           thaliana PE=4 SV=1
          Length = 643

 Score = 37.4 bits (85), Expect = 0.39
 Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 15/80 (18%)
 Frame = -3

Query: 493 KERNANLGPNGHEIEIDPDTFDNATLWEV------YRRGKSILKR----AN*PTKP---- 356
           ++RN +L  +G EIE+D +  DN TLWE+      Y++  S +KR     N  T P    
Sbjct: 487 RKRNGHLAQDGDEIELDIEAVDNETLWELDRFVTNYKKMASKIKRQGFIRNVSTPPRNMA 546

Query: 355 -VAPRSKPADKVVAGKIGEE 299
            VA       +   G  GEE
Sbjct: 547 SVAEMGSAEKRTRRGDAGEE 566


>tr|Q7Y214|Q7Y214_ARATH Putative uncharacterized protein At5g65630
           (At5g65630) OS=Arabidopsis thaliana GN=At5g65630 PE=2
           SV=1
          Length = 590

 Score = 37.4 bits (85), Expect = 0.39
 Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 15/80 (18%)
 Frame = -3

Query: 493 KERNANLGPNGHEIEIDPDTFDNATLWEV------YRRGKSILKR----AN*PTKP---- 356
           ++RN +L  +G EIE+D +  DN TLWE+      Y++  S +KR     N  T P    
Sbjct: 432 RKRNGHLAQDGDEIELDIEAVDNETLWELDRFVTNYKKMASKIKRQGFIRNVSTPPRNMA 491

Query: 355 -VAPRSKPADKVVAGKIGEE 299
            VA       +   G  GEE
Sbjct: 492 SVAEMGSAEKRTRRGDAGEE 511


>tr|B4G138|B4G138_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 350

 Score = 37.0 bits (84), Expect = 0.51
 Identities = 16/31 (51%), Positives = 23/31 (74%)
 Frame = -3

Query: 493 KERNANLGPNGHEIEIDPDTFDNATLWEVYR 401
           K+RN++L  +  EIE+D D+FD  TLWE+ R
Sbjct: 188 KKRNSSLNQHDDEIEVDIDSFDVETLWELDR 218


>tr|Q0JPM7|Q0JPM7_ORYSJ Os01g0214300 protein (Fragment) OS=Oryza
           sativa subsp. japonica GN=Os01g0214300 PE=4 SV=1
          Length = 166

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
 Frame = -3

Query: 487 RNANLGPNGHEIEIDPDTFDNATLWEVYR----RGKSILKRAN*PTKPVA 350
           RN +L  +  EIE+D D+FD  TLWE+ R      KSI K       PVA
Sbjct: 1   RNLSLSQHDDEIEVDIDSFDVETLWELDRFVTNYKKSISKNKRKAENPVA 50


>tr|Q9LXA7|Q9LXA7_ARATH Bromodomain protein-like OS=Arabidopsis
           thaliana GN=F12B17_100 PE=4 SV=1
          Length = 678

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 6/45 (13%)
 Frame = -3

Query: 493 KERNANLGPNGHEIEIDPDTFDNATLWEV------YRRGKSILKR 377
           ++R  +L  +G EIE+D +  DN TLWE+      YR+  S +KR
Sbjct: 502 RKRTRDLPQDGDEIELDIEALDNETLWELDRFVTNYRKMASKIKR 546


>tr|Q9AR00|Q9AR00_SOLLC PSTVd RNA-biding protein, Virp1 (PSTVd
           RNA-binding protein Virp1d) (PSTVd RNA-binding protein
           Virp1c) (PSTVd RNA-binding protein Virp1b) (PSTVd
           RNA-binding protein Virp1a) OS=Solanum lycopersicum PE=2
           SV=1
          Length = 602

 Score = 34.3 bits (77), Expect = 3.3
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = -3

Query: 493 KERNANLGPNGHEIEIDPDTFDNATLWEVYR 401
           ++RN +L  +G EIE+D +  D  TLWE+ R
Sbjct: 437 RKRNEHLAQDGDEIELDIEALDTETLWELDR 467