BP920324 |
Clone id |
YMU001_000135_G01 |
Library |
YMU01 |
Length |
373 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000135_G01. |
Accession |
BP920324 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
GACATCGTCGCCAGCAGCAGAGAAAGTCGGAAGCATCGAGATTATCATTATTGTATCATC TCCGTCAGTATAGGCTAGATATGGAGGTGCAGACATGTGGGAAACCCATCGATACTCTGC TGGAGAAGGTCTTGTGCATGAACATCCTCTCCTCTGACTACTTCAAGGAGCTTTACCGGC TGAAGACTCATCACGAGGTTATTGATGAGATATATAACCAGGTGGACCATGTGGAGCCAT GGATGACGGGAAACTGCAGAGGCCCCTCTACTGCTTTTTGCCTTCTCTACAAATTTTTCA CCATGAAGCTTACAGTGAAGCAGATGCAAGGCTTGCTCAACCATGGGGACTCTCCCTACA TCCGAGCGGTGGG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q6AXY7 |
Definition |
sp|Q6AXY7|PR38B_RAT Pre-mRNA-splicing factor 38B OS=Rattus norvegicus |
Align length |
103 |
Score (bit) |
103.0 |
E-value |
3.0e-22 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP920324|Adiantum capillus-veneris mRNA, clone: YMU001_000135_G01. (373 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q6AXY7|PR38B_RAT Pre-mRNA-splicing factor 38B OS=Rattus norve... 103 3e-22 sp|Q80SY5|PR38B_MOUSE Pre-mRNA-splicing factor 38B OS=Mus muscul... 103 3e-22 sp|Q5VTL8|PR38B_HUMAN Pre-mRNA-splicing factor 38B OS=Homo sapie... 103 3e-22 sp|Q6P7Y3|PR38B_DANRE Pre-mRNA-splicing factor 38B OS=Danio reri... 100 2e-21 sp|P35569|IRS1_MOUSE Insulin receptor substrate 1 OS=Mus musculu... 33 0.44 sp|P35570|IRS1_RAT Insulin receptor substrate 1 OS=Rattus norveg... 32 1.3 sp|A6NDU8|CE051_HUMAN UPF0600 protein C5orf51 OS=Homo sapiens GN... 30 2.9 sp|P35568|IRS1_HUMAN Insulin receptor substrate 1 OS=Homo sapien... 30 3.7 sp|Q28224|IRS1_CERAE Insulin receptor substrate 1 OS=Cercopithec... 30 3.7 sp|A8MWS5|NBP6L_HUMAN Neuroblastoma breakpoint family member 6-l... 30 3.7 sp|Q0V9F1|CO058_XENTR UPF0580 protein C15orf58 homolog OS=Xenopu... 30 4.9 sp|Q63R39|GLNE_BURPS Glutamate-ammonia-ligase adenylyltransferas... 30 4.9 sp|Q62HC7|GLNE_BURMA Glutamate-ammonia-ligase adenylyltransferas... 30 4.9 sp|Q6GQ71|NUF2B_XENLA Kinetochore protein Nuf2-B OS=Xenopus laev... 29 8.3 sp|Q8QHA5|DNA2L_XENLA DNA2-like helicase OS=Xenopus laevis GN=dn... 29 8.3
>sp|Q6AXY7|PR38B_RAT Pre-mRNA-splicing factor 38B OS=Rattus norvegicus GN=Prpf38b PE=2 SV=1 Length = 542
Score = 103 bits (257), Expect = 3e-22 Identities = 57/103 (55%), Positives = 67/103 (65%), Gaps = 19/103 (18%) Frame = +3
Query: 120 LEKVLCMNILSSDYFK-ELYRLKTHHEVIDEIYNQVDHVEPW---------MTGNCRGP- 266 L ++ NILSS YFK +LY LKT+HEV+DEIY +V HVEPW TG C G Sbjct: 58 LNPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEKGSRKTAGQTGMCGGVR 117
Query: 267 --------STAFCLLYKFFTMKLTVKQMQGLLNHGDSPYIRAV 371 STAFCLLYK FT+KLT KQ+ GL+ H DSPYIRA+ Sbjct: 118 GVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRAL 160
>sp|Q80SY5|PR38B_MOUSE Pre-mRNA-splicing factor 38B OS=Mus musculus GN=Prpf38b PE=1 SV=1 Length = 542
Score = 103 bits (257), Expect = 3e-22 Identities = 57/103 (55%), Positives = 67/103 (65%), Gaps = 19/103 (18%) Frame = +3
Query: 120 LEKVLCMNILSSDYFK-ELYRLKTHHEVIDEIYNQVDHVEPW---------MTGNCRGP- 266 L ++ NILSS YFK +LY LKT+HEV+DEIY +V HVEPW TG C G Sbjct: 59 LNPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEKGSRKTAGQTGMCGGVR 118
Query: 267 --------STAFCLLYKFFTMKLTVKQMQGLLNHGDSPYIRAV 371 STAFCLLYK FT+KLT KQ+ GL+ H DSPYIRA+ Sbjct: 119 GVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRAL 161
>sp|Q5VTL8|PR38B_HUMAN Pre-mRNA-splicing factor 38B OS=Homo sapiens GN=PRPF38B PE=1 SV=1 Length = 546
Score = 103 bits (257), Expect = 3e-22 Identities = 57/103 (55%), Positives = 67/103 (65%), Gaps = 19/103 (18%) Frame = +3
Query: 120 LEKVLCMNILSSDYFK-ELYRLKTHHEVIDEIYNQVDHVEPW---------MTGNCRGP- 266 L ++ NILSS YFK +LY LKT+HEV+DEIY +V HVEPW TG C G Sbjct: 58 LNPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEKGSRKTAGQTGMCGGVR 117
Query: 267 --------STAFCLLYKFFTMKLTVKQMQGLLNHGDSPYIRAV 371 STAFCLLYK FT+KLT KQ+ GL+ H DSPYIRA+ Sbjct: 118 GVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRAL 160
>sp|Q6P7Y3|PR38B_DANRE Pre-mRNA-splicing factor 38B OS=Danio rerio GN=prpf38b PE=2 SV=1 Length = 501
Score = 100 bits (250), Expect = 2e-21 Identities = 55/103 (53%), Positives = 67/103 (65%), Gaps = 19/103 (18%) Frame = +3
Query: 120 LEKVLCMNILSSDYFK-ELYRLKTHHEVIDEIYNQVDHVEPW---------MTGNCRGP- 266 L ++ N+LSS YFK +LY LKT+HEV+DEIY +V+HVEPW TG C G Sbjct: 36 LNPMILTNVLSSPYFKVQLYELKTYHEVVDEIYFKVNHVEPWEKGSRKTAGQTGMCGGVR 95
Query: 267 --------STAFCLLYKFFTMKLTVKQMQGLLNHGDSPYIRAV 371 STAFCLLYK FT+KLT KQ+ GL+ H DSP IRA+ Sbjct: 96 GVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHSDSPDIRAL 138
>sp|P35569|IRS1_MOUSE Insulin receptor substrate 1 OS=Mus musculus GN=Irs1 PE=1 SV=1 Length = 1233
Score = 33.1 bits (74), Expect = 0.44 Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 4/82 (4%) Frame = +2
Query: 125 EGLVHEHPXXXXXQGAL----PAEDSSRGY**DI*PGGPCGAMDDGKLQRPLYCFLPSLQ 292 EG H+H G L AEDSS D GG CGA + L P + L Sbjct: 777 EGARHQHLRLSSSSGRLRYTATAEDSSSSTSSDSLGGGYCGARPESSLTHPHHHVLQPHL 836
Query: 293 IFHHEAYSEADARLAQPWGLSL 358 + ++ ++RLA+P LSL Sbjct: 837 PRKVDTAAQTNSRLARPTRLSL 858
>sp|P35570|IRS1_RAT Insulin receptor substrate 1 OS=Rattus norvegicus GN=Irs1 PE=1 SV=1 Length = 1235
Score = 31.6 bits (70), Expect = 1.3 Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 4/82 (4%) Frame = +2
Query: 125 EGLVHEHPXXXXXQGAL----PAEDSSRGY**DI*PGGPCGAMDDGKLQRPLYCFLPSLQ 292 EG H+H G L AEDSS D GG CGA + + P + L Sbjct: 777 EGARHQHLRLSSSSGRLRYTATAEDSSSSTSSDSLGGGYCGARPESSVTHPHHHALQPHL 836
Query: 293 IFHHEAYSEADARLAQPWGLSL 358 + ++ ++RLA+P LSL Sbjct: 837 PRKVDTAAQTNSRLARPTRLSL 858
>sp|A6NDU8|CE051_HUMAN UPF0600 protein C5orf51 OS=Homo sapiens GN=C5orf51 PE=1 SV=1 Length = 294
Score = 30.4 bits (67), Expect = 2.9 Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 15/91 (16%) Frame = -3
Query: 338 EQALHLLHCKLHGEKFVEKAKSSRGA-------SAVSRHPWLHMVHLVI--YLINNLVMS 186 E +H HC L G++ +E RGA S R WL ++ YL++ + Sbjct: 112 ENNMHPKHCNLLGDELLECLSWRRGALLYMYCHSLTKRREWLLRKSSLLKKYLLDGISYL 171
Query: 185 LQ------PVKLLEVVRGEDVHAQDLLQQSI 111 LQ P++L E V +D+ LL I Sbjct: 172 LQMLNYRCPIQLNEGVSFQDLDTAKLLSAGI 202
>sp|P35568|IRS1_HUMAN Insulin receptor substrate 1 OS=Homo sapiens GN=IRS1 PE=1 SV=1 Length = 1242
Score = 30.0 bits (66), Expect = 3.7 Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 4/82 (4%) Frame = +2
Query: 125 EGLVHEHPXXXXXQGAL----PAEDSSRGY**DI*PGGPCGAMDDGKLQRPLYCFLPSLQ 292 EG H+H G L A+DSS D GG CGA + L P + L Sbjct: 782 EGARHQHLRLSTSSGRLLYAATADDSSSSTSSDSLGGGYCGARLEPSLPHPHHQVLQPHL 841
Query: 293 IFHHEAYSEADARLAQPWGLSL 358 + ++ ++RLA+P LSL Sbjct: 842 PRKVDTAAQTNSRLARPTRLSL 863
>sp|Q28224|IRS1_CERAE Insulin receptor substrate 1 OS=Cercopithecus aethiops GN=IRS1 PE=1 SV=1 Length = 1251
Score = 30.0 bits (66), Expect = 3.7 Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 4/82 (4%) Frame = +2
Query: 125 EGLVHEHPXXXXXQGAL----PAEDSSRGY**DI*PGGPCGAMDDGKLQRPLYCFLPSLQ 292 EG H+H G L A+DSS D GG CGA + L P + L Sbjct: 780 EGARHQHLRLSTSSGRLLYAATADDSSSSTSSDSLGGGYCGARLEPSLPHPHHQVLQPHL 839
Query: 293 IFHHEAYSEADARLAQPWGLSL 358 + ++ ++RLA+P LSL Sbjct: 840 PRKVDTAAQTNSRLARPTRLSL 861
>sp|A8MWS5|NBP6L_HUMAN Neuroblastoma breakpoint family member 6-like protein OS=Homo sapiens PE=3 SV=2 Length = 240
Score = 30.0 bits (66), Expect = 3.7 Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 1/112 (0%) Frame = +3
Query: 27 SEASRLSLLYHLRQYRLDMEVQTCGKPIDTLLEK-VLCMNILSSDYFKELYRLKTHHEVI 203 S+A+ SL HL++Y+ + C I+++LE+ V ++ + RL+ H +I Sbjct: 45 SKATAYSLTNHLQKYKCE----ECKDLIESVLEEEVQFQERELAELPRSAARLRIHDPLI 100
Query: 204 DEIYNQVDHVEPWMTGNCRGPSTAFCLLYKFFTMKLTVKQMQGLLNHGDSPY 359 ++ H+ T RG C L+ +K TVK +GLL + D Y Sbjct: 101 QAQAEELTHLRQ-KTQEGRG----VCYLFTQH-VKNTVKSFEGLLRNTDIAY 146
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7PYY5 |
Definition |
tr|A7PYY5|A7PYY5_VITVI Chromosome chr4 scaffold_39, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
97 |
Score (bit) |
191.0 |
E-value |
2.0e-47 |
Report |
|