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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920335
Clone id YMU001_000135_H07
Library
Length 411
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000135_H07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTTTTTTTATTCGACTCACAGTAGTGAGTAGTTTGTACTAATAAATTCCAAAAAATTTAC
AATATTGACCCTGCTCACAAGCCGAGCCTGGGCACCAAGACAAGTTGAGCAAATAGACTA
GAAACAACGGCTGATCCGGGAGCCACCCGACTACATGACCCGACTGGCTGGCAAGGGAGC
CACCCTGCCACACAAGTAGAGGCTAAGGGAGCCATCCATCTGAAAAGTGACCAAAAATGG
ACTAGGATTTCCACCAAAATGAACGGGCTACCACCCCGTATGAGCTGCCCACCAGGTCGA
TCGATGACAACCATACCGCCACAGAAGACCCATAGCTAATCCCCCAAAAAGTACCACCAA
AATCAACTCGAGGCAGCGTAGATGAGATATCCCAAGGGAACTTAGATACAT
■■Homology search results ■■ -
sp_hit_id Q46839
Definition sp|Q46839|GLCA_ECOLI Glycolate permease glcA OS=Escherichia coli (strain K12)
Align length 32
Score (bit) 31.2
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920335|Adiantum capillus-veneris mRNA, clone:
YMU001_000135_H07.
         (411 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q46839|GLCA_ECOLI Glycolate permease glcA OS=Escherichia coli...    31   1.7  
sp|P13834|GYS1_RABIT Glycogen [starch] synthase, muscle OS=Oryct...    30   2.9  
sp|Q9Z1E4|GYS1_MOUSE Glycogen [starch] synthase, muscle OS=Mus m...    30   2.9  
sp|Q8MJ26|GYS1_MACMU Glycogen [starch] synthase, muscle OS=Macac...    30   2.9  
sp|P13807|GYS1_HUMAN Glycogen [starch] synthase, muscle OS=Homo ...    30   2.9  
sp|A7MB78|GYS1_BOVIN Glycogen [starch] synthase, muscle OS=Bos t...    30   2.9  
sp|P12691|ALKB_PSEOL Alkane 1-monooxygenase OS=Pseudomonas oleov...    30   3.8  
sp|Q6AXM9|CL029_RAT Uncharacterized protein C12orf29 homolog OS=...    30   5.0  
sp|Q8BHN7|CL029_MOUSE Uncharacterized protein C12orf29 homolog O...    30   5.0  
sp|Q2UBI2|YME2_ASPOR Mitochondrial escape protein 2 OS=Aspergill...    29   6.5  
sp|A4QVZ8|NTE1_MAGGR Lysophospholipase NTE1 OS=Magnaporthe grise...    29   8.4  
sp|Q80W94|MOGT2_MOUSE 2-acylglycerol O-acyltransferase 2 OS=Mus ...    29   8.4  
sp|P50899|GUXB_CELFI Exoglucanase B OS=Cellulomonas fimi GN=cbhB...    29   8.4  
sp|Q3IY15|AROC_RHOS4 Chorismate synthase OS=Rhodobacter sphaeroi...    29   8.5  
sp|A3PFR1|AROC_RHOS1 Chorismate synthase OS=Rhodobacter sphaeroi...    29   8.5  

>sp|Q46839|GLCA_ECOLI Glycolate permease glcA OS=Escherichia coli
           (strain K12) GN=glcA PE=1 SV=1
          Length = 560

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -2

Query: 320 GGMVVIDRPGGQLIRGGSPFILVEILVHFWSL 225
           GG V  +   GQ+IR  SPF+++ +LV  W++
Sbjct: 295 GGPVPSEYSLGQIIRAWSPFLILTVLVTIWTM 326


>sp|P13834|GYS1_RABIT Glycogen [starch] synthase, muscle
           OS=Oryctolagus cuniculus GN=GYS1 PE=1 SV=4
          Length = 735

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -2

Query: 293 GGQLIRGGSPFILVEILVHFWSLFRWMAPLASTCVAG 183
           G  LI GG   +L+++    W+L RW   L  TC  G
Sbjct: 104 GRWLIEGGPLVVLLDVGASAWALERWKGELWDTCNIG 140


>sp|Q9Z1E4|GYS1_MOUSE Glycogen [starch] synthase, muscle OS=Mus
           musculus GN=Gys1 PE=1 SV=2
          Length = 738

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -2

Query: 293 GGQLIRGGSPFILVEILVHFWSLFRWMAPLASTCVAG 183
           G  LI GG   +L+++    W+L RW   L  TC  G
Sbjct: 104 GRWLIEGGPLVVLLDVGASAWALERWKGELWDTCNIG 140


>sp|Q8MJ26|GYS1_MACMU Glycogen [starch] synthase, muscle OS=Macaca
           mulatta GN=GYS1 PE=2 SV=1
          Length = 737

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -2

Query: 293 GGQLIRGGSPFILVEILVHFWSLFRWMAPLASTCVAG 183
           G  LI GG   +L+++    W+L RW   L  TC  G
Sbjct: 104 GRWLIEGGPLVVLLDVGASAWALERWKGELWDTCNIG 140


>sp|P13807|GYS1_HUMAN Glycogen [starch] synthase, muscle OS=Homo
           sapiens GN=GYS1 PE=1 SV=2
          Length = 737

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -2

Query: 293 GGQLIRGGSPFILVEILVHFWSLFRWMAPLASTCVAG 183
           G  LI GG   +L+++    W+L RW   L  TC  G
Sbjct: 104 GRWLIEGGPLVVLLDVGASAWALERWKGELWDTCNIG 140


>sp|A7MB78|GYS1_BOVIN Glycogen [starch] synthase, muscle OS=Bos
           taurus GN=GYS1 PE=2 SV=1
          Length = 736

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -2

Query: 293 GGQLIRGGSPFILVEILVHFWSLFRWMAPLASTCVAG 183
           G  LI GG   +L+++    W+L RW   L  TC  G
Sbjct: 104 GRWLIEGGPLVVLLDVGASAWALERWKGELWDTCNIG 140


>sp|P12691|ALKB_PSEOL Alkane 1-monooxygenase OS=Pseudomonas
           oleovorans GN=alkB PE=1 SV=1
          Length = 401

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
 Frame = -3

Query: 403 KFPWDISSTLPRVDFGG------TFWGISYGSSVAVWLSSIDLVGSSYG 275
           K+ W +S+  P     G      T WGI YG  + VW  ++ L+ + +G
Sbjct: 19  KYLWILSTLWPATPMIGIWLANETGWGIFYGLVLLVWYGALPLLDAMFG 67


>sp|Q6AXM9|CL029_RAT Uncharacterized protein C12orf29 homolog
           OS=Rattus norvegicus PE=2 SV=2
          Length = 325

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -3

Query: 268 ARSFWWKS*SIFGHFSDGWLP*PLLVWQGGS-LASQSGHVVGWLP 137
           A+ F W +   F    + W+P   +  Q G  +  ++GH+ GW+P
Sbjct: 100 AKEFHWNTEEDFKPVPECWIPAKEIEKQNGKPVPDENGHIPGWVP 144


>sp|Q8BHN7|CL029_MOUSE Uncharacterized protein C12orf29 homolog
           OS=Mus musculus PE=2 SV=1
          Length = 327

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -3

Query: 268 ARSFWWKS*SIFGHFSDGWLP*PLLVWQGGS-LASQSGHVVGWLP 137
           A+ F W +   F    + W+P   +  Q G  +  ++GH+ GW+P
Sbjct: 100 AKEFHWNTEEDFKPVPECWIPAKEIEKQNGKPVPDENGHIPGWVP 144


>sp|Q2UBI2|YME2_ASPOR Mitochondrial escape protein 2 OS=Aspergillus
           oryzae GN=yme2 PE=3 SV=1
          Length = 864

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 264 RATTPYELPTRSIDDNHTATEDP*LIPQKVPPKSTRGSVDEI 389
           RA+ PYE   + ID  H A  DP  I ++V P      + E+
Sbjct: 115 RASRPYEEALKRIDRPHLAASDPLRIIRRVFPHELEVEIKEV 156
tr_hit_id A8J1G5
Definition tr|A8J1G5|A8J1G5_CHLRE Predicted protein OS=Chlamydomonas reinhardtii
Align length 89
Score (bit) 37.4
E-value 0.38
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920335|Adiantum capillus-veneris mRNA, clone:
YMU001_000135_H07.
         (411 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8J1G5|A8J1G5_CHLRE Predicted protein OS=Chlamydomonas reinha...    37   0.38 
tr|Q223K0|Q223K0_RHOFD Putative uncharacterized protein OS=Rhodo...    35   1.4  
tr|Q48Q39|Q48Q39_PSE14 Type III effector HopR1 OS=Pseudomonas sy...    35   1.9  
tr|Q2TYV0|Q2TYV0_ASPOR Predicted transporter OS=Aspergillus oryz...    35   1.9  
tr|B8NYF9|B8NYF9_ASPFL Efflux pump antibiotic resistance protein...    35   1.9  
tr|Q9LHS5|Q9LHS5_ARATH Cell division related protein-like OS=Ara...    35   2.4  
tr|Q0WNP2|Q0WNP2_ARATH Cell division related protein-like (Fragm...    35   2.4  
tr|Q9LZ70|Q9LZ70_ARATH Myotubularin-like protein OS=Arabidopsis ...    34   4.2  
tr|B7QJF6|B7QJF6_IXOSC PERQ amino acid-rich with GYF domain-cont...    33   5.4  
tr|B2C4F9|B2C4F9_9CLOS Methyl transferase/helicase OS=Grapevine ...    33   5.5  
tr|A7PDE3|A7PDE3_VITVI Chromosome chr17 scaffold_12, whole genom...    33   5.5  
tr|Q0B3M0|Q0B3M0_BURCM Major facilitator superfamily MFS_1 OS=Bu...    33   7.1  
tr|B1Z571|B1Z571_BURA4 Major facilitator superfamily MFS_1 OS=Bu...    33   7.1  
tr|B7U9L4|B7U9L4_CERCA Slow as molasses OS=Ceratitis capitata PE...    33   7.1  
tr|A2QB98|A2QB98_ASPNC Contig An01c0470, complete genome OS=Aspe...    33   7.1  
tr|O71188|O71188_9CLOS P_protease/methyl transferase/helicase (F...    33   7.1  
tr|B1LT04|B1LT04_METRJ Putative uncharacterized protein OS=Methy...    33   7.1  
tr|Q7Y158|Q7Y158_ORYSJ Putative uncharacterized protein OSJNBa00...    33   7.1  
tr|A8N2Z2|A8N2Z2_COPC7 Putative uncharacterized protein OS=Copri...    33   7.1  
tr|Q63L54|Q63L54_BURPS Putative nitrate/nitrite transporter OS=B...    33   9.3  
tr|Q3JMC7|Q3JMC7_BURP1 Nitrate/nitrite transporter OS=Burkholder...    33   9.3  
tr|Q2T5U9|Q2T5U9_BURTA Nitrate/nitrite transporter OS=Burkholder...    33   9.3  
tr|A3P5G4|A3P5G4_BURP0 Major facilitator family transporter OS=B...    33   9.3  
tr|A3NJV0|A3NJV0_BURP6 Major facilitator family transporter OS=B...    33   9.3  
tr|B7CEK6|B7CEK6_BURPS Major facilitator family transporter OS=B...    33   9.3  
tr|B1H6F7|B1H6F7_BURPS Major facilitator family transporter OS=B...    33   9.3  
tr|A8KSF9|A8KSF9_BURPS Major facilitator family transporter OS=B...    33   9.3  
tr|A8ELV6|A8ELV6_BURPS Major facilitator family transporter OS=B...    33   9.3  
tr|A4MH72|A4MH72_BURPS Major facilitator family transporter OS=B...    33   9.3  
tr|Q217M6|Q217M6_RHOPB Putative uncharacterized protein OS=Rhodo...    33   9.3  

>tr|A8J1G5|A8J1G5_CHLRE Predicted protein OS=Chlamydomonas
           reinhardtii GN=CHLREDRAFT_174920 PE=4 SV=1
          Length = 790

 Score = 37.4 bits (85), Expect = 0.38
 Identities = 33/89 (37%), Positives = 40/89 (44%), Gaps = 9/89 (10%)
 Frame = -3

Query: 370 RVDFGGT---FWGISYGSSVAVWLSSIDLVGSSYGVVARSFWWKS*SIFGHFSDGWLP*P 200
           ++DFGG    F   SYGSS AV L  ++LVG  Y     S           F   WL  P
Sbjct: 162 QIDFGGVAPAFTASSYGSSGAVRLRDLNLVGLPYSRTVNSPM--------DFFSPWLH-P 212

Query: 199 LLVWQGGSLASQS------GHVVGWLPDQ 131
             V++GGS  + S         V WLPDQ
Sbjct: 213 FRVFRGGSGGATSTPQLIATSCVLWLPDQ 241


>tr|Q223K0|Q223K0_RHOFD Putative uncharacterized protein
           OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC
           BAA-621 / T118) GN=Rfer_0075 PE=4 SV=1
          Length = 424

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 21/67 (31%), Positives = 33/67 (49%)
 Frame = -3

Query: 406 SKFPWDISSTLPRVDFGGTFWGISYGSSVAVWLSSIDLVGSSYGVVARSFWWKS*SIFGH 227
           +KFP+D+   +P+ +FGG                ++  V S  GV+  S  W+S     +
Sbjct: 219 AKFPFDLIEPVPKGEFGG---------------DALHRVNSQSGVLCGSILWES-KRTRN 262

Query: 226 FSDGWLP 206
           +SDGWLP
Sbjct: 263 WSDGWLP 269


>tr|Q48Q39|Q48Q39_PSE14 Type III effector HopR1 OS=Pseudomonas
           syringae pv. phaseolicola (strain 1448A / Race 6)
           GN=hopR1 PE=4 SV=1
          Length = 1959

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
 Frame = +1

Query: 121 ETTADPGATRLHDP-----TG-WQGSHPATQVEAKGAIHLKS-DQKWTRISTKMNGLPPR 279
           E TAD  A RL +P     TG WQ SH    +E  G +H  + +++WT  S  + G  PR
Sbjct: 151 EITADAVAARLAEPPIGLLTGVWQSSHDRAYIERGGVVHTANMEERWT--SLTLPGADPR 208


>tr|Q2TYV0|Q2TYV0_ASPOR Predicted transporter OS=Aspergillus oryzae
           GN=AO090103000099 PE=4 SV=1
          Length = 553

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
 Frame = -1

Query: 372 LELILVVLFGGLAMG-LLWRYGCHRSTWWAAHTGW*PVHFGGNPSPFLVTFQMDGSLSLY 196
           L L+LV+L   +A+G L+W    ++  W      W P+HF    +PF+V      SL+ +
Sbjct: 326 LTLLLVILLNYMAVGTLIW----YQVLWLQEVWHWSPLHFAVGWTPFVVCATAAASLAAW 381

Query: 195 LCGRVA 178
           L  R+A
Sbjct: 382 LIPRLA 387


>tr|B8NYF9|B8NYF9_ASPFL Efflux pump antibiotic resistance protein,
           putative OS=Aspergillus flavus NRRL3357 GN=AFLA_011290
           PE=4 SV=1
          Length = 515

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
 Frame = -1

Query: 372 LELILVVLFGGLAMG-LLWRYGCHRSTWWAAHTGW*PVHFGGNPSPFLVTFQMDGSLSLY 196
           L L+LV+L   +A+G L+W    ++  W      W P+HF    +PF+V      SL+ +
Sbjct: 312 LTLLLVILLNYMAVGTLIW----YQVLWLQEVWHWSPLHFAVGWTPFVVCATAAASLAAW 367

Query: 195 LCGRVA 178
           L  R+A
Sbjct: 368 LIPRLA 373


>tr|Q9LHS5|Q9LHS5_ARATH Cell division related protein-like
           OS=Arabidopsis thaliana GN=At5g06110 PE=4 SV=1
          Length = 663

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 9/74 (12%)
 Frame = +1

Query: 73  AHKPSLGTKTS*A---------NRLETTADPGATRLHDPTGWQGSHPATQVEAKGAIHLK 225
           AH+ +  TKT  A         N     ++P A    DP GW        V+A      +
Sbjct: 566 AHEDNNSTKTETAEQNGKTKENNNSNGNSEPAAASGSDPDGWSAVQERALVQALKTFPKE 625

Query: 226 SDQKWTRISTKMNG 267
           ++Q+W R++T + G
Sbjct: 626 TNQRWERVATAVPG 639


>tr|Q0WNP2|Q0WNP2_ARATH Cell division related protein-like
           (Fragment) OS=Arabidopsis thaliana GN=At5g06110 PE=2
           SV=1
          Length = 366

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 9/74 (12%)
 Frame = +1

Query: 73  AHKPSLGTKTS*A---------NRLETTADPGATRLHDPTGWQGSHPATQVEAKGAIHLK 225
           AH+ +  TKT  A         N     ++P A    DP GW        V+A      +
Sbjct: 269 AHEDNNSTKTETAEQNGKTKENNNSNGNSEPAAASGSDPDGWSAVQERALVQALKTFPKE 328

Query: 226 SDQKWTRISTKMNG 267
           ++Q+W R++T + G
Sbjct: 329 TNQRWERVATAVPG 342


>tr|Q9LZ70|Q9LZ70_ARATH Myotubularin-like protein OS=Arabidopsis
           thaliana GN=T32M21_150 PE=4 SV=1
          Length = 799

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 9/65 (13%)
 Frame = -3

Query: 379 TLPRVDFGGTFWG----ISYGSSVAV-----WLSSIDLVGSSYGVVARSFWWKS*SIFGH 227
           T P+V  GG  WG     S  +SV+V     WLS I  + +    +A     +S S+  H
Sbjct: 349 TWPKVRHGGWTWGGGNLSSMSASVSVLGDSGWLSHIQSILAGVAWIAARVAMESASVLVH 408

Query: 226 FSDGW 212
            SDGW
Sbjct: 409 CSDGW 413


>tr|B7QJF6|B7QJF6_IXOSC PERQ amino acid-rich with GYF
           domain-containing protein, putative OS=Ixodes scapularis
           GN=IscW_ISCW014230 PE=4 SV=1
          Length = 1032

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = +1

Query: 145 TRLHDPTGWQGSH-PATQVEAKGAIHLKSDQKWTRISTKMNGLPPRMSCPPGRSMTTIPP 321
           TR  +   W+G   P  Q EA+     K + K TR +     L  R+S PP     + PP
Sbjct: 314 TREFEEESWEGDLLPPAQAEARPPA--KREDKPTREAA----LAKRVSEPPAEKPKSPPP 367

Query: 322 QKTHS*SPKK 351
           Q+TH   P+K
Sbjct: 368 QRTHQVPPRK 377


>tr|B2C4F9|B2C4F9_9CLOS Methyl transferase/helicase OS=Grapevine
            leafroll-associated virus 3 GN=ORF1a PE=4 SV=1
          Length = 2237

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
 Frame = -3

Query: 352  TFWGISYGSSVAVWLSSIDL-------VGSSYGVVARSFWWKS*SIFGHFSDGWLP*PLL 194
            T + IS  S + +W  ++         +G+  G  A +  WK    FG FS+ W   P +
Sbjct: 1161 TSYAISGCSMLGIWAHALPRHLMFFFGLGTLLGARASANTWK----FGGFSNNWCAVPEV 1216

Query: 193  VWQGGSLAS 167
            VW+G S++S
Sbjct: 1217 VWRGRSISS 1225