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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920346
Clone id YMU001_000136_A10
Library
Length 557
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000136_A10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CGCGGCCTACAGCAACGCCCATAATCTGTATACAATCGTAGCTCCTTCAACATAATGTCT
CTGACAACCCCAACTTCAGGACTGAAGTCCAGCCGTTGTCGCAACTCCCGTAGGATCCGC
ACAAGAAGCTCAGGTTGGTGGTGAACTCCTACCCAGCATCCATTCACAAAGATCTTGGTT
GCTTGGGAAATGACAGCAGGGGATATTTCCTCACAGTTTTCTGTGCCCCATTCCTCCAAA
GACTCCAATACAAGATTTGCTGCTGACCCCACAGTTATGTATGACATAAGTGCCAAATTT
TTTACGAGGCCACAGGCCTGTCCTTCTGGAGTTTCTGCAGGGCAAATCATTCCCCAATGT
GAATTGTGTAGTTGGCGAGGCTTTGCCAATTTCCCTTCTCGACCAATTGGAGAATTTAGC
CTCCGAAGATGCGACAAAGTAGACGCATAGGTTAGACGGTTCAACACCTGAGAAACACCT
GCACGTACACCAGCTGTGTTTGCTTGGCCCCAGTTTCCAGTGGCTAACGAATACTTAAAA
CCATCCGTGATTGTCTT
■■Homology search results ■■ -
sp_hit_id Q42877
Definition sp|Q42877|RPB2_SOLLC DNA-directed RNA polymerase II subunit RPB2 OS=Solanum lycopersicum
Align length 180
Score (bit) 310.0
E-value 4.0e-84
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920346|Adiantum capillus-veneris mRNA, clone:
YMU001_000136_A10.
         (541 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q42877|RPB2_SOLLC DNA-directed RNA polymerase II subunit RPB2...   310   4e-84
sp|P38420|RPB2_ARATH DNA-directed RNA polymerase II subunit RPB2...   308   1e-83
sp|Q54J75|RPB2_DICDI DNA-directed RNA polymerase II subunit rpb2...   267   3e-71
sp|Q8CFI7|RPB2_MOUSE DNA-directed RNA polymerase II subunit RPB2...   254   1e-67
sp|P30876|RPB2_HUMAN DNA-directed RNA polymerase II subunit RPB2...   254   1e-67
sp|P08266|RPB2_DROME DNA-directed RNA polymerase II subunit RPB2...   250   4e-66
sp|Q02061|RPB2_SCHPO DNA-directed RNA polymerase II subunit RPB2...   249   5e-66
sp|Q10578|RPB2_CAEEL DNA-directed RNA polymerase II subunit RPB2...   246   7e-65
sp|A5DHT2|RPB2_PICGU DNA-directed RNA polymerase II subunit RPB2...   240   3e-63
sp|P08518|RPB2_YEAST DNA-directed RNA polymerase II subunit RPB2...   233   3e-61
sp|Q6FLD5|RPB2_CANGA DNA-directed RNA polymerase II subunit RPB2...   232   1e-60
sp|Q8SR75|RPB2_ENCCU DNA-directed RNA polymerase II subunit RPB2...   231   2e-60
sp|Q753Q4|RPB2_ASHGO DNA-directed RNA polymerase II subunit RPB2...   228   1e-59
sp|P31814|RPOB_THECE DNA-directed RNA polymerase subunit B OS=Th...   126   8e-29
sp|Q03587|RPOB_THEAC DNA-directed RNA polymerase subunit B OS=Th...   121   3e-27
sp|Q10233|RPC2_SCHPO DNA-directed RNA polymerase III subunit RPC...   118   2e-26
sp|P25167|RPC2_DROME DNA-directed RNA polymerase III subunit RPC...   118   2e-26
sp|P11513|RPOB_SULAC DNA-directed RNA polymerase subunit B OS=Su...   110   3e-24
sp|Q9NW08|RPC2_HUMAN DNA-directed RNA polymerase III subunit RPC...   109   8e-24
sp|P59470|RPC2_MOUSE DNA-directed RNA polymerase III subunit RPC...   108   1e-23
sp|Q7T6X7|RPO2_MIMIV DNA-directed RNA polymerase subunit 2 OS=Ac...   108   2e-23
sp|P22276|RPC2_YEAST DNA-directed RNA polymerase III subunit RPC...   108   2e-23
sp|O27123|RPOB2_METTH DNA-directed RNA polymerase subunit B'' OS...   103   7e-22
sp|P09844|RPOB2_METTW DNA-directed RNA polymerase subunit B'' OS...   101   2e-21
sp|Q58444|RPOB2_METJA DNA-directed RNA polymerase subunit B'' OS...   100   5e-21
sp|P41558|RPOB2_METVS DNA-directed RNA polymerase subunit B'' OS...    99   1e-20
sp|P15352|RPOB2_HALSA DNA-directed RNA polymerase subunit B'' OS...    91   5e-18
sp|Q54IZ9|RPC2_DICDI DNA-directed RNA polymerase III subunit rpc...    84   3e-16
sp|Q85FM7|RPOB_ADICA DNA-directed RNA polymerase subunit beta OS...    59   2e-08
sp|Q3ZJ93|RPOB_PSEAK DNA-directed RNA polymerase subunit beta OS...    55   2e-07

>sp|Q42877|RPB2_SOLLC DNA-directed RNA polymerase II subunit RPB2
           OS=Solanum lycopersicum GN=RPB2 PE=2 SV=1
          Length = 1191

 Score =  310 bits (793), Expect = 4e-84
 Identities = 152/180 (84%), Positives = 161/180 (89%)
 Frame = -1

Query: 541 KTITDGFKYSLATGNWGQANTAGVRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP 362
           KTIT G KYSLATGNWGQAN AG RAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP
Sbjct: 442 KTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP 501

Query: 361 RQLHNSHWGMICPAETPEGQACGLVKNLALMSYITVGSAANLVLESLEEWGTENCEEISP 182
           RQLHNS WGM+CPAETPEGQACGLVKNLALM YITVGSAA  +LE LEEWGTEN EEISP
Sbjct: 502 RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISP 561

Query: 181 AVISQATKIFVNGCWVGVHHQPELLVRILRELRQRLDFSPEVGVVRDIMLKELRLYTDYG 2
           AVI QATKIFVNG WVG+H  P++LVR LR LR+R+D + EVGVVRDI LKELR+YTDYG
Sbjct: 562 AVIPQATKIFVNGTWVGIHRDPDMLVRTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYG 621


>sp|P38420|RPB2_ARATH DNA-directed RNA polymerase II subunit RPB2
           OS=Arabidopsis thaliana GN=RPB135 PE=2 SV=2
          Length = 1188

 Score =  308 bits (788), Expect = 1e-83
 Identities = 151/180 (83%), Positives = 161/180 (89%)
 Frame = -1

Query: 541 KTITDGFKYSLATGNWGQANTAGVRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP 362
           KTIT G KYSLATGNWGQAN AG RAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP
Sbjct: 443 KTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP 502

Query: 361 RQLHNSHWGMICPAETPEGQACGLVKNLALMSYITVGSAANLVLESLEEWGTENCEEISP 182
           RQLHNS WGM+CPAETPEGQACGLVKNLALM YITVGSAA  +LE LEEWGTEN EEISP
Sbjct: 503 RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISP 562

Query: 181 AVISQATKIFVNGCWVGVHHQPELLVRILRELRQRLDFSPEVGVVRDIMLKELRLYTDYG 2
           +VI QATKIFVNG WVGVH  P++LV+ LR LR+R+D + EVGVVRDI LKELR+YTDYG
Sbjct: 563 SVIPQATKIFVNGMWVGVHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYG 622


>sp|Q54J75|RPB2_DICDI DNA-directed RNA polymerase II subunit rpb2
           OS=Dictyostelium discoideum GN=polr2b PE=3 SV=1
          Length = 1170

 Score =  267 bits (682), Expect = 3e-71
 Identities = 132/181 (72%), Positives = 152/181 (83%), Gaps = 1/181 (0%)
 Frame = -1

Query: 541 KTITDGFKYSLATGNWGQANTAGVRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP 362
           KTIT G KYSLATGNWG + + G ++GV+QVLNRLT+ASTLSHLRRLN+PIGREGKLAKP
Sbjct: 436 KTITSGLKYSLATGNWGSSKSGGTKSGVAQVLNRLTFASTLSHLRRLNTPIGREGKLAKP 495

Query: 361 RQLHNSHWGMICPAETPEGQACGLVKNLALMSYITVGSAANLVLESLEEWGTENCEEISP 182
           RQLHN+HWG++CP+ETPEGQACGLVKNLA+MSYI+VGSA+  +LE LEEW TEN EEIS 
Sbjct: 496 RQLHNTHWGIVCPSETPEGQACGLVKNLAMMSYISVGSASQPILEFLEEWTTENLEEISD 555

Query: 181 -AVISQATKIFVNGCWVGVHHQPELLVRILRELRQRLDFSPEVGVVRDIMLKELRLYTDY 5
            + I  ATKIFVNG WVG+HHQP+ L+  LR LR+  D S EV VVRDI  KELRLYTD 
Sbjct: 556 LSSIFSATKIFVNGMWVGIHHQPDKLLSTLRLLRRCGDVSVEVSVVRDIREKELRLYTDP 615

Query: 4   G 2
           G
Sbjct: 616 G 616


>sp|Q8CFI7|RPB2_MOUSE DNA-directed RNA polymerase II subunit RPB2
           OS=Mus musculus GN=Polr2b PE=2 SV=2
          Length = 1174

 Score =  254 bits (650), Expect = 1e-67
 Identities = 126/182 (69%), Positives = 148/182 (81%), Gaps = 2/182 (1%)
 Frame = -1

Query: 541 KTITDGFKYSLATGNWGQANTAG-VRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAK 365
           + I+DG KYSLATGNWG    A   RAGVSQVLNRLT+ASTLSHLRRLNSPIGR+GKLAK
Sbjct: 438 RIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAK 497

Query: 364 PRQLHNSHWGMICPAETPEGQACGLVKNLALMSYITVGSAANLVLESLEEWGTENCEEIS 185
           PRQLHN+ WGM+CPAETPEG A GLVKNLALM+YI+VGS  + +LE LEEW  EN EEIS
Sbjct: 498 PRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIS 557

Query: 184 PAVISQATKIFVNGCWVGVHHQPELLVRILRELRQRLD-FSPEVGVVRDIMLKELRLYTD 8
           PA I+ ATKIFVNGCWVG+H  PE L+  LR+LR+++D    EV ++RDI  +E+R+YTD
Sbjct: 558 PAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTD 617

Query: 7   YG 2
            G
Sbjct: 618 AG 619


>sp|P30876|RPB2_HUMAN DNA-directed RNA polymerase II subunit RPB2
           OS=Homo sapiens GN=POLR2B PE=1 SV=1
          Length = 1174

 Score =  254 bits (650), Expect = 1e-67
 Identities = 126/182 (69%), Positives = 148/182 (81%), Gaps = 2/182 (1%)
 Frame = -1

Query: 541 KTITDGFKYSLATGNWGQANTAG-VRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAK 365
           + I+DG KYSLATGNWG    A   RAGVSQVLNRLT+ASTLSHLRRLNSPIGR+GKLAK
Sbjct: 438 RIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAK 497

Query: 364 PRQLHNSHWGMICPAETPEGQACGLVKNLALMSYITVGSAANLVLESLEEWGTENCEEIS 185
           PRQLHN+ WGM+CPAETPEG A GLVKNLALM+YI+VGS  + +LE LEEW  EN EEIS
Sbjct: 498 PRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIS 557

Query: 184 PAVISQATKIFVNGCWVGVHHQPELLVRILRELRQRLD-FSPEVGVVRDIMLKELRLYTD 8
           PA I+ ATKIFVNGCWVG+H  PE L+  LR+LR+++D    EV ++RDI  +E+R+YTD
Sbjct: 558 PAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTD 617

Query: 7   YG 2
            G
Sbjct: 618 AG 619


>sp|P08266|RPB2_DROME DNA-directed RNA polymerase II subunit RPB2
           OS=Drosophila melanogaster GN=RpII140 PE=2 SV=2
          Length = 1176

 Score =  250 bits (638), Expect = 4e-66
 Identities = 123/180 (68%), Positives = 147/180 (81%), Gaps = 2/180 (1%)
 Frame = -1

Query: 535 ITDGFKYSLATGNWGQANTAG-VRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPR 359
           ITDG +YSLATGNWG    A   RAGVSQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPR
Sbjct: 441 ITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPR 500

Query: 358 QLHNSHWGMICPAETPEGQACGLVKNLALMSYITVGSAANLVLESLEEWGTENCEEISPA 179
           QLHN+ WGM+CPAETPEG A GLVKNLALM+YI+VGS  + +LE LEEW  EN EEI+P+
Sbjct: 501 QLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPS 560

Query: 178 VISQATKIFVNGCWVGVHHQPELLVRILRELRQRLD-FSPEVGVVRDIMLKELRLYTDYG 2
            I+ ATKIFVNGCWVG+H  PE L+  LR+LR+++D    EV ++RDI  +E+R+YTD G
Sbjct: 561 AIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAG 620


>sp|Q02061|RPB2_SCHPO DNA-directed RNA polymerase II subunit RPB2
           OS=Schizosaccharomyces pombe GN=rpb2 PE=2 SV=2
          Length = 1210

 Score =  249 bits (637), Expect = 5e-66
 Identities = 120/179 (67%), Positives = 142/179 (79%), Gaps = 1/179 (0%)
 Frame = -1

Query: 535 ITDGFKYSLATGNWGQANTAGV-RAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPR 359
           IT+G +YSLATGNWG    + V R GVSQVLNR T+ASTLSHLRR N+PIGR+GKLAKPR
Sbjct: 439 ITNGLRYSLATGNWGDQKRSMVNRVGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPR 498

Query: 358 QLHNSHWGMICPAETPEGQACGLVKNLALMSYITVGSAANLVLESLEEWGTENCEEISPA 179
           QLHN+HWGM+CPAETPEGQACGLVKNL+LMSY++VGS +  ++E LEEWG E  E+ +P+
Sbjct: 499 QLHNTHWGMVCPAETPEGQACGLVKNLSLMSYVSVGSPSAPIIEFLEEWGLETLEDYNPS 558

Query: 178 VISQATKIFVNGCWVGVHHQPELLVRILRELRQRLDFSPEVGVVRDIMLKELRLYTDYG 2
               ATK+FVNG W+GVH  P  L   LR LR+RLD S EV +VRDI  KELRL+TD G
Sbjct: 559 ASPNATKVFVNGVWLGVHRDPAHLTETLRSLRRRLDISAEVSIVRDIREKELRLFTDAG 617


>sp|Q10578|RPB2_CAEEL DNA-directed RNA polymerase II subunit RPB2
           OS=Caenorhabditis elegans GN=rbp-2 PE=2 SV=2
          Length = 1193

 Score =  246 bits (627), Expect = 7e-65
 Identities = 122/181 (67%), Positives = 144/181 (79%), Gaps = 2/181 (1%)
 Frame = -1

Query: 538 TITDGFKYSLATGNWGQANTAGV-RAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP 362
           TIT G  YSLATGNWG    A   RAGVSQVLNRLTY +TLSHLRR NSPIGREGKLAKP
Sbjct: 445 TITRGLTYSLATGNWGDQKKAHQSRAGVSQVLNRLTYTATLSHLRRANSPIGREGKLAKP 504

Query: 361 RQLHNSHWGMICPAETPEGQACGLVKNLALMSYITVGSAANLVLESLEEWGTENCEEISP 182
           RQLHN+ WGM+CPAETPEGQA GLVKNLALM+YI+VGS    +LE LEEW  EN EE+SP
Sbjct: 505 RQLHNTQWGMVCPAETPEGQAVGLVKNLALMAYISVGSLPEPILEFLEEWSMENLEEVSP 564

Query: 181 AVISQATKIFVNGCWVGVHHQPELLVRILRELRQRLD-FSPEVGVVRDIMLKELRLYTDY 5
           + I+ ATKIFVNG WVG+H +P+ L+  L++LR+++D    EV +VRDI  +E+R+YTD 
Sbjct: 565 SAIADATKIFVNGAWVGIHREPDQLMTTLKKLRRQMDIIVSEVSMVRDIRDREIRIYTDA 624

Query: 4   G 2
           G
Sbjct: 625 G 625


>sp|A5DHT2|RPB2_PICGU DNA-directed RNA polymerase II subunit RPB2
           OS=Pichia guilliermondii GN=RPB2 PE=3 SV=3
          Length = 1236

 Score =  240 bits (613), Expect = 3e-63
 Identities = 114/181 (62%), Positives = 142/181 (78%), Gaps = 1/181 (0%)
 Frame = -1

Query: 541 KTITDGFKYSLATGNWGQANTA-GVRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAK 365
           +TITDG +YSLATGNWG+   A   RAGVSQVLNR TY+STLSHLRR N+PIGR+GK+AK
Sbjct: 445 QTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKIAK 504

Query: 364 PRQLHNSHWGMICPAETPEGQACGLVKNLALMSYITVGSAANLVLESLEEWGTENCEEIS 185
           PRQLHN+HWG++CPAETPEGQACGLVKNL+LMS I+VG+ +  +L  LEEWG E  E+  
Sbjct: 505 PRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTPSEPILYFLEEWGMEPLEDYV 564

Query: 184 PAVISQATKIFVNGCWVGVHHQPELLVRILRELRQRLDFSPEVGVVRDIMLKELRLYTDY 5
           P+    +T++FVNG WVG H +P  LV  +R LR+R D SPEV ++RDI  KE +++TD 
Sbjct: 565 PSNSPDSTRVFVNGVWVGTHREPAHLVDTMRSLRRRGDISPEVSIIRDIREKEFKIFTDA 624

Query: 4   G 2
           G
Sbjct: 625 G 625


>sp|P08518|RPB2_YEAST DNA-directed RNA polymerase II subunit RPB2
           OS=Saccharomyces cerevisiae GN=RPB2 PE=1 SV=2
          Length = 1224

 Score =  233 bits (595), Expect = 3e-61
 Identities = 113/181 (62%), Positives = 138/181 (76%), Gaps = 1/181 (0%)
 Frame = -1

Query: 541 KTITDGFKYSLATGNWGQANTA-GVRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAK 365
           KTIT G KY+LATGNWG+   A   RAGVSQVLNR TY+STLSHLRR N+PIGR+GKLAK
Sbjct: 451 KTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKLAK 510

Query: 364 PRQLHNSHWGMICPAETPEGQACGLVKNLALMSYITVGSAANLVLESLEEWGTENCEEIS 185
           PRQLHN+HWG++CPAETPEGQACGLVKNL+LMS I+VG+    ++  L EWG E  E+  
Sbjct: 511 PRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPIITFLSEWGMEPLEDYV 570

Query: 184 PAVISQATKIFVNGCWVGVHHQPELLVRILRELRQRLDFSPEVGVVRDIMLKELRLYTDY 5
           P     AT++FVNG W GVH  P  L+  LR LR++ D +PEV ++RDI  KEL+++TD 
Sbjct: 571 PHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDINPEVSMIRDIREKELKIFTDA 630

Query: 4   G 2
           G
Sbjct: 631 G 631
tr_hit_id Q1L6D4
Definition tr|Q1L6D4|Q1L6D4_EMBCO RNA polymerase II second largest subunit (Fragment) OS=Embothrium coccineum
Align length 180
Score (bit) 318.0
E-value 2.0e-85
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920346|Adiantum capillus-veneris mRNA, clone:
YMU001_000136_A10.
         (541 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q1L6D4|Q1L6D4_EMBCO RNA polymerase II second largest subunit ...   318   2e-85
tr|Q1L6D2|Q1L6D2_9MAGN DNA-directed RNA polymerase (Fragment) OS...   318   2e-85
tr|Q1L6B7|Q1L6B7_NELNU DNA-directed RNA polymerase (Fragment) OS...   318   2e-85
tr|A9SJE5|A9SJE5_PHYPA Predicted protein OS=Physcomitrella paten...   317   3e-85
tr|Q1L6A5|Q1L6A5_9MAGN DNA-directed RNA polymerase (Fragment) OS...   317   3e-85
tr|Q1L5Z6|Q1L5Z6_9MAGN DNA-directed RNA polymerase (Fragment) OS...   317   3e-85
tr|Q10G20|Q10G20_ORYSJ DNA-directed RNA polymerase OS=Oryza sati...   317   3e-85
tr|A3AKU7|A3AKU7_ORYSJ DNA-directed RNA polymerase OS=Oryza sati...   317   3e-85
tr|A2XK42|A2XK42_ORYSI DNA-directed RNA polymerase OS=Oryza sati...   317   3e-85
tr|Q1L5B1|Q1L5B1_LIRTU DNA-directed RNA polymerase (Fragment) OS...   316   4e-85
tr|Q1L5B0|Q1L5B0_PLAOI DNA-directed RNA polymerase (Fragment) OS...   316   4e-85
tr|Q1L6E1|Q1L6E1_9MAGN DNA-directed RNA polymerase (Fragment) OS...   315   7e-85
tr|Q1L6D7|Q1L6D7_9MAGN DNA-directed RNA polymerase (Fragment) OS...   315   7e-85
tr|Q1L6C4|Q1L6C4_9MAGN DNA-directed RNA polymerase (Fragment) OS...   315   7e-85
tr|Q1L6A4|Q1L6A4_9MAGN DNA-directed RNA polymerase (Fragment) OS...   315   7e-85
tr|A7PJ31|A7PJ31_VITVI DNA-directed RNA polymerase OS=Vitis vini...   315   7e-85
tr|A5C1N0|A5C1N0_VITVI DNA-directed RNA polymerase OS=Vitis vini...   315   7e-85
tr|Q1L5B2|Q1L5B2_ESCCA DNA-directed RNA polymerase (Fragment) OS...   314   2e-84
tr|Q1L6F0|Q1L6F0_9MAGN DNA-directed RNA polymerase (Fragment) OS...   314   2e-84
tr|Q1L5B5|Q1L5B5_RHOMC DNA-directed RNA polymerase OS=Rhododendr...   313   3e-84
tr|Q1L5A6|Q1L5A6_9ERIC RNA polymerase II second largest subunit ...   313   3e-84
tr|Q1L6D6|Q1L6D6_9MAGN DNA-directed RNA polymerase (Fragment) OS...   313   4e-84
tr|Q1L5Z4|Q1L5Z4_NICSY DNA-directed RNA polymerase OS=Nicotiana ...   313   4e-84
tr|Q1L5Z2|Q1L5Z2_PETHY DNA-directed RNA polymerase OS=Petunia hy...   313   4e-84
tr|Q1L5Z1|Q1L5Z1_SOLLC DNA-directed RNA polymerase OS=Solanum ly...   313   4e-84
tr|Q1L6E4|Q1L6E4_9MAGN DNA-directed RNA polymerase (Fragment) OS...   312   6e-84
tr|Q1L5B4|Q1L5B4_RHOMC DNA-directed RNA polymerase OS=Rhododendr...   312   6e-84
tr|Q1L6E0|Q1L6E0_9ROSI DNA-directed RNA polymerase (Fragment) OS...   312   8e-84
tr|Q1L5Z3|Q1L5Z3_ANTMA DNA-directed RNA polymerase OS=Antirrhinu...   311   1e-83
tr|Q1L5B3|Q1L5B3_9MAGN DNA-directed RNA polymerase (Fragment) OS...   311   1e-83

>tr|Q1L6D4|Q1L6D4_EMBCO RNA polymerase II second largest subunit
           (Fragment) OS=Embothrium coccineum GN=RPB2 PE=3 SV=1
          Length = 706

 Score =  318 bits (814), Expect = 2e-85
 Identities = 154/180 (85%), Positives = 164/180 (91%)
 Frame = -1

Query: 541 KTITDGFKYSLATGNWGQANTAGVRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP 362
           KTIT G KYSLATGNWGQAN AG RAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP
Sbjct: 338 KTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP 397

Query: 361 RQLHNSHWGMICPAETPEGQACGLVKNLALMSYITVGSAANLVLESLEEWGTENCEEISP 182
           RQLHNSHWGM+CPAETPEGQACGLVKNLALM YITVGSAAN +LE LEEW TEN EEISP
Sbjct: 398 RQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISP 457

Query: 181 AVISQATKIFVNGCWVGVHHQPELLVRILRELRQRLDFSPEVGVVRDIMLKELRLYTDYG 2
           AVI QATKIFVNGCWVG+H  PELLV+ LR+LR+++D + EVGV+RDI LKELRLYTDYG
Sbjct: 458 AVIPQATKIFVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYG 517


>tr|Q1L6D2|Q1L6D2_9MAGN DNA-directed RNA polymerase (Fragment)
           OS=Euptelea polyandra GN=RPB2 PE=3 SV=1
          Length = 874

 Score =  318 bits (814), Expect = 2e-85
 Identities = 154/180 (85%), Positives = 164/180 (91%)
 Frame = -1

Query: 541 KTITDGFKYSLATGNWGQANTAGVRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP 362
           KTIT G KYSLATGNWGQAN AG RAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP
Sbjct: 338 KTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP 397

Query: 361 RQLHNSHWGMICPAETPEGQACGLVKNLALMSYITVGSAANLVLESLEEWGTENCEEISP 182
           RQLHNSHWGM+CPAETPEGQACGLVKNLALM YITVGSAAN +LE LEEW TEN EEISP
Sbjct: 398 RQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISP 457

Query: 181 AVISQATKIFVNGCWVGVHHQPELLVRILRELRQRLDFSPEVGVVRDIMLKELRLYTDYG 2
           AVI QATKIFVNGCWVG+H  PELLV+ LR+LR+++D + EVGV+RDI LKELRLYTDYG
Sbjct: 458 AVIPQATKIFVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYG 517


>tr|Q1L6B7|Q1L6B7_NELNU DNA-directed RNA polymerase (Fragment)
           OS=Nelumbo nucifera GN=RPB2 PE=3 SV=1
          Length = 865

 Score =  318 bits (814), Expect = 2e-85
 Identities = 154/180 (85%), Positives = 164/180 (91%)
 Frame = -1

Query: 541 KTITDGFKYSLATGNWGQANTAGVRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP 362
           KTIT G KYSLATGNWGQAN AG RAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP
Sbjct: 330 KTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP 389

Query: 361 RQLHNSHWGMICPAETPEGQACGLVKNLALMSYITVGSAANLVLESLEEWGTENCEEISP 182
           RQLHNSHWGM+CPAETPEGQACGLVKNLALM YITVGSAAN +LE LEEW TEN EEISP
Sbjct: 390 RQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISP 449

Query: 181 AVISQATKIFVNGCWVGVHHQPELLVRILRELRQRLDFSPEVGVVRDIMLKELRLYTDYG 2
           AVI QATKIFVNGCWVG+H  PELLV+ LR+LR+++D + EVGV+RDI LKELRLYTDYG
Sbjct: 450 AVIPQATKIFVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYG 509


>tr|A9SJE5|A9SJE5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_165263 PE=4 SV=1
          Length = 1185

 Score =  317 bits (812), Expect = 3e-85
 Identities = 155/180 (86%), Positives = 165/180 (91%)
 Frame = -1

Query: 541 KTITDGFKYSLATGNWGQANTAGVRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP 362
           KTIT G KYSLATGNWGQANTAGVRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP
Sbjct: 436 KTITSGLKYSLATGNWGQANTAGVRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP 495

Query: 361 RQLHNSHWGMICPAETPEGQACGLVKNLALMSYITVGSAANLVLESLEEWGTENCEEISP 182
           RQLHNSHWGM+CPAETPEGQACGLVKNLALM+YITVGSAAN +LE LEEW TEN EEISP
Sbjct: 496 RQLHNSHWGMMCPAETPEGQACGLVKNLALMAYITVGSAANPILEFLEEWSTENFEEISP 555

Query: 181 AVISQATKIFVNGCWVGVHHQPELLVRILRELRQRLDFSPEVGVVRDIMLKELRLYTDYG 2
           AVI  +TKIFVNG WVG+H  PELLVR LR+LR+++D + EVGVVRDI LKELRLYTDYG
Sbjct: 556 AVIPNSTKIFVNGLWVGIHRNPELLVRTLRQLRRQVDVNTEVGVVRDIRLKELRLYTDYG 615


>tr|Q1L6A5|Q1L6A5_9MAGN DNA-directed RNA polymerase (Fragment)
           OS=Tetracentron sinense GN=RPB2 PE=3 SV=1
          Length = 951

 Score =  317 bits (811), Expect = 3e-85
 Identities = 153/180 (85%), Positives = 164/180 (91%)
 Frame = -1

Query: 541 KTITDGFKYSLATGNWGQANTAGVRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP 362
           KTIT G KYSLATGNWGQAN AG RAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP
Sbjct: 338 KTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP 397

Query: 361 RQLHNSHWGMICPAETPEGQACGLVKNLALMSYITVGSAANLVLESLEEWGTENCEEISP 182
           RQLHNSHWGM+CPAETPEGQACGLVKNLALM YITVGSAAN +LE LEEW TEN EEISP
Sbjct: 398 RQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISP 457

Query: 181 AVISQATKIFVNGCWVGVHHQPELLVRILRELRQRLDFSPEVGVVRDIMLKELRLYTDYG 2
           AVI QATKIFVNGCWVG+H  P+LLV+ LR+LR+++D + EVGV+RDI LKELRLYTDYG
Sbjct: 458 AVIPQATKIFVNGCWVGIHRNPDLLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYG 517


>tr|Q1L5Z6|Q1L5Z6_9MAGN DNA-directed RNA polymerase (Fragment)
           OS=Berberidopsis beckleri GN=RPB2 PE=3 SV=1
          Length = 873

 Score =  317 bits (811), Expect = 3e-85
 Identities = 153/180 (85%), Positives = 164/180 (91%)
 Frame = -1

Query: 541 KTITDGFKYSLATGNWGQANTAGVRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP 362
           KTIT G KYSLATGNWGQAN AG RAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP
Sbjct: 338 KTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP 397

Query: 361 RQLHNSHWGMICPAETPEGQACGLVKNLALMSYITVGSAANLVLESLEEWGTENCEEISP 182
           RQLHNSHWGM+CPAETPEGQACGLVKNLALM YITVGSAAN +LE LEEW TEN EEISP
Sbjct: 398 RQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISP 457

Query: 181 AVISQATKIFVNGCWVGVHHQPELLVRILRELRQRLDFSPEVGVVRDIMLKELRLYTDYG 2
           AVI QATKIFVNGCWVG+H  P+LLV+ LR+LR+++D + EVGV+RDI LKELRLYTDYG
Sbjct: 458 AVIPQATKIFVNGCWVGIHRNPDLLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYG 517


>tr|Q10G20|Q10G20_ORYSJ DNA-directed RNA polymerase OS=Oryza sativa
            subsp. japonica GN=LOC_Os03g44484 PE=3 SV=1
          Length = 1222

 Score =  317 bits (811), Expect = 3e-85
 Identities = 154/180 (85%), Positives = 163/180 (90%)
 Frame = -1

Query: 541  KTITDGFKYSLATGNWGQANTAGVRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP 362
            KTIT G KYSLATGNWGQAN AG RAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP
Sbjct: 476  KTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP 535

Query: 361  RQLHNSHWGMICPAETPEGQACGLVKNLALMSYITVGSAANLVLESLEEWGTENCEEISP 182
            RQLHNSHWGM+CPAETPEGQACGLVKNLALM YITVGSAAN +LE LEEWGTEN EEISP
Sbjct: 536  RQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTENFEEISP 595

Query: 181  AVISQATKIFVNGCWVGVHHQPELLVRILRELRQRLDFSPEVGVVRDIMLKELRLYTDYG 2
            AVI QA KIFVNGCWVG+H  P+LLV+ LR LR+++D + EVGVVRDI LKELRLYTDYG
Sbjct: 596  AVIPQAAKIFVNGCWVGIHRNPDLLVKTLRRLRRQIDVNTEVGVVRDIRLKELRLYTDYG 655


>tr|A3AKU7|A3AKU7_ORYSJ DNA-directed RNA polymerase OS=Oryza sativa
           subsp. japonica GN=OsJ_011419 PE=3 SV=1
          Length = 1135

 Score =  317 bits (811), Expect = 3e-85
 Identities = 154/180 (85%), Positives = 163/180 (90%)
 Frame = -1

Query: 541 KTITDGFKYSLATGNWGQANTAGVRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP 362
           KTIT G KYSLATGNWGQAN AG RAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP
Sbjct: 389 KTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP 448

Query: 361 RQLHNSHWGMICPAETPEGQACGLVKNLALMSYITVGSAANLVLESLEEWGTENCEEISP 182
           RQLHNSHWGM+CPAETPEGQACGLVKNLALM YITVGSAAN +LE LEEWGTEN EEISP
Sbjct: 449 RQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTENFEEISP 508

Query: 181 AVISQATKIFVNGCWVGVHHQPELLVRILRELRQRLDFSPEVGVVRDIMLKELRLYTDYG 2
           AVI QA KIFVNGCWVG+H  P+LLV+ LR LR+++D + EVGVVRDI LKELRLYTDYG
Sbjct: 509 AVIPQAAKIFVNGCWVGIHRNPDLLVKTLRRLRRQIDVNTEVGVVRDIRLKELRLYTDYG 568


>tr|A2XK42|A2XK42_ORYSI DNA-directed RNA polymerase OS=Oryza sativa
            subsp. indica GN=OsI_12811 PE=3 SV=1
          Length = 1222

 Score =  317 bits (811), Expect = 3e-85
 Identities = 154/180 (85%), Positives = 163/180 (90%)
 Frame = -1

Query: 541  KTITDGFKYSLATGNWGQANTAGVRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP 362
            KTIT G KYSLATGNWGQAN AG RAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP
Sbjct: 476  KTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP 535

Query: 361  RQLHNSHWGMICPAETPEGQACGLVKNLALMSYITVGSAANLVLESLEEWGTENCEEISP 182
            RQLHNSHWGM+CPAETPEGQACGLVKNLALM YITVGSAAN +LE LEEWGTEN EEISP
Sbjct: 536  RQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTENFEEISP 595

Query: 181  AVISQATKIFVNGCWVGVHHQPELLVRILRELRQRLDFSPEVGVVRDIMLKELRLYTDYG 2
            AVI QA KIFVNGCWVG+H  P+LLV+ LR LR+++D + EVGVVRDI LKELRLYTDYG
Sbjct: 596  AVIPQAAKIFVNGCWVGIHRNPDLLVKTLRRLRRQIDVNTEVGVVRDIRLKELRLYTDYG 655


>tr|Q1L5B1|Q1L5B1_LIRTU DNA-directed RNA polymerase (Fragment)
           OS=Liriodendron tulipifera GN=RPB2 PE=3 SV=1
          Length = 942

 Score =  316 bits (810), Expect = 4e-85
 Identities = 153/180 (85%), Positives = 164/180 (91%)
 Frame = -1

Query: 541 KTITDGFKYSLATGNWGQANTAGVRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP 362
           KTIT G KYSLATGNWGQAN AG RAGVSQVLNRLT+ASTLSHLRRLNSPIGREGKLAKP
Sbjct: 330 KTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTFASTLSHLRRLNSPIGREGKLAKP 389

Query: 361 RQLHNSHWGMICPAETPEGQACGLVKNLALMSYITVGSAANLVLESLEEWGTENCEEISP 182
           RQLHNSHWGM+CPAETPEGQACGLVKNLALM YITVGSAAN +LE LEEW TEN EEISP
Sbjct: 390 RQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISP 449

Query: 181 AVISQATKIFVNGCWVGVHHQPELLVRILRELRQRLDFSPEVGVVRDIMLKELRLYTDYG 2
           AVI QATKIFVNGCWVG+H  PELLV+ LR+LR+++D + EVGV+RDI LKELRLYTDYG
Sbjct: 450 AVIPQATKIFVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYG 509