NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920365
Clone id YMU001_000136_C05
Library
Length 518
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000136_C05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTGGCTTGTCTTCTTCGTCAAATACACTCCCAAAACCACGTATAGCCAGATCCCTTTCAG
CCAGCTTGAAGCCTTGCCCTAGATCACAACACTCCTCTATGGCAACCAATCTTTCCAAAG
CTTCATCTGATAGACTTTCCTTTAGAGGATAGAAAAGATAAGCATGTGCTTCCTTATCTG
CTCTTCCAACTCTCCCCGCGTAGCTGGTAAATCTGAGGCCAATCCAAAAAGGTGGATATC
TTCAACAATAATCGTGTTAACGCGTCTTATGTCAAGACCACTTTCAATTATGTTTGTGCA
CAAAAGAAGTTGTGACTCGCCTTGAGCAAAGCGATCCATGGTCTCTTCAAGTAGAGTTGC
ACTTTGTTTTCCATATGCAATGCCAATTTCTATGCTTGGAAATAATCTTTGCAAAGCGGC
CTTCTTGGCCGGTAGACCTTGGCTTCGAGGCAGAACATAATAAACTTGTCCATTCCGTGC
AATCTCATAATTAATGGCAGCTATAATCTGCTCCTCGT
■■Homology search results ■■ -
sp_hit_id Q55750
Definition sp|Q55750|MFD_SYNY3 Transcription-repair-coupling factor OS=Synechocystis sp. (strain PCC 6803)
Align length 99
Score (bit) 95.9
E-value 5.0e-32
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920365|Adiantum capillus-veneris mRNA, clone:
YMU001_000136_C05.
         (518 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q55750|MFD_SYNY3 Transcription-repair-coupling factor OS=Syne...    96   5e-32
sp|Q49V12|MFD_STAS1 Transcription-repair-coupling factor OS=Stap...    80   3e-27
sp|Q5HRQ2|MFD_STAEQ Transcription-repair-coupling factor OS=Stap...    80   5e-27
sp|Q4L3G0|MFD_STAHJ Transcription-repair-coupling factor OS=Stap...    82   1e-26
sp|Q8NXZ6|MFD_STAAW Transcription-repair-coupling factor OS=Stap...    80   1e-26
sp|Q6GBY5|MFD_STAAS Transcription-repair-coupling factor OS=Stap...    80   1e-26
sp|Q6GJG8|MFD_STAAR Transcription-repair-coupling factor OS=Stap...    80   1e-26
sp|Q7A7B2|MFD_STAAN Transcription-repair-coupling factor OS=Stap...    80   1e-26
sp|Q99WA0|MFD_STAAM Transcription-repair-coupling factor OS=Stap...    80   1e-26
sp|Q5HIH2|MFD_STAAC Transcription-repair-coupling factor OS=Stap...    80   1e-26
sp|Q2YVY2|MFD_STAAB Transcription-repair-coupling factor OS=Stap...    80   1e-26
sp|Q2G0R8|MFD_STAA8 Transcription-repair-coupling factor OS=Stap...    80   1e-26
sp|Q2FJD8|MFD_STAA3 Transcription-repair-coupling factor OS=Stap...    80   1e-26
sp|Q8CMT1|MFD_STAES Transcription-repair-coupling factor OS=Stap...    80   1e-26
sp|P64326|MFD_MYCTU Transcription-repair-coupling factor OS=Myco...    84   2e-25
sp|P64327|MFD_MYCBO Transcription-repair-coupling factor OS=Myco...    84   2e-25
sp|P37474|MFD_BACSU Transcription-repair-coupling factor OS=Baci...    75   8e-25
sp|O51568|MFD_BORBU Transcription-repair-coupling factor OS=Borr...    69   3e-24
sp|Q9ZJ57|MFD_HELPJ Transcription-repair-coupling factor OS=Heli...    77   8e-24
sp|O26066|MFD_HELPY Transcription-repair-coupling factor OS=Heli...    77   2e-23
sp|Q92H58|MFD_RICCN Transcription-repair-coupling factor OS=Rick...    69   1e-22
sp|Q1RI82|MFD_RICBR Transcription-repair-coupling factor OS=Rick...    67   3e-22
sp|P30958|MFD_ECOLI Transcription-repair-coupling factor OS=Esch...    67   7e-22
sp|Q4UMJ0|MFD_RICFE Transcription-repair-coupling factor OS=Rick...    67   3e-21
sp|P57381|MFD_BUCAI Transcription-repair-coupling factor OS=Buch...    73   4e-21
sp|Q9AKD5|MFD_RICTY Transcription-repair-coupling factor OS=Rick...    67   5e-21
sp|O05955|MFD_RICPR Transcription-repair-coupling factor OS=Rick...    65   1e-20
sp|P45128|MFD_HAEIN Transcription-repair-coupling factor OS=Haem...    60   7e-19
sp|O52236|MFD_MYXXA Transcription-repair-coupling factor OS=Myxo...    85   2e-16
sp|Q89AK2|MFD_BUCBP Transcription-repair-coupling factor OS=Buch...    77   6e-14

>sp|Q55750|MFD_SYNY3 Transcription-repair-coupling factor
            OS=Synechocystis sp. (strain PCC 6803) GN=mfd PE=3 SV=1
          Length = 1199

 Score = 95.9 bits (237), Expect(2) = 5e-32
 Identities = 50/99 (50%), Positives = 65/99 (65%)
 Frame = -3

Query: 513  EQIIAAINYEIARNGQVYYVLPRSQGLPAKKAALQRLFPSIEIGIAYGKQSATLLEETMD 334
            E I  AI  E+ R GQV+YV+PR +G+      L+++ PS  I I +G+   + LE TM 
Sbjct: 842  EVIRTAIRNELDRGGQVFYVVPRIEGIEELGGQLRQMVPSARIAIGHGQMEESELESTML 901

Query: 333  RFAQGESQLLLCTNIIESGLDIRRVNTIIVEDIHLFGLA 217
             F  GE+ +L+CT IIE+GLDI RVNTIIVED   FGLA
Sbjct: 902  AFNDGEADILVCTTIIEAGLDIPRVNTIIVEDAQKFGLA 940



 Score = 61.2 bits (147), Expect(2) = 5e-32
 Identities = 29/62 (46%), Positives = 44/62 (70%)
 Frame = -2

Query: 196  GRVGRADKEAHAYLFYPLKESLSDEALERLVAIEECCDLGQGFKLAERDLAIRGFGSVFD 17
            GRVGR+  +AHA+L YP ++ L+++A  RL A++E   LG G++LA RD+ IRG G++  
Sbjct: 947  GRVGRSGIQAHAWLLYPNQKQLTEKARLRLRALQEFSQLGSGYQLATRDMEIRGVGNLLG 1006

Query: 16   EE 11
             E
Sbjct: 1007 AE 1008


>sp|Q49V12|MFD_STAS1 Transcription-repair-coupling factor
            OS=Staphylococcus saprophyticus subsp. saprophyticus
            (strain ATCC 15305 / DSM 20229) GN=mfd PE=3 SV=1
          Length = 1170

 Score = 80.5 bits (197), Expect(2) = 3e-27
 Identities = 43/109 (39%), Positives = 65/109 (59%)
 Frame = -3

Query: 498  AINYEIARNGQVYYVLPRSQGLPAKKAALQRLFPSIEIGIAYGKQSATLLEETMDRFAQG 319
            A+  E++R+GQV+Y+  + Q +  K+  LQ L P   IG+A+G+ +   LEETM  F   
Sbjct: 821  ALERELSRDGQVFYLYNKVQSIYEKREQLQMLMPDANIGVAHGQMNERDLEETMLSFINH 880

Query: 318  ESQLLLCTNIIESGLDIRRVNTIIVEDIHLFGLASDLPATRGELEEQIR 172
            E  +++ T IIE+G+D+   NT+I+ED   FGL S L   RG +    R
Sbjct: 881  EYDIIVTTTIIETGVDVPNANTLIIEDADRFGL-SQLYQLRGRVGRSSR 928



 Score = 60.5 bits (145), Expect(2) = 3e-27
 Identities = 29/62 (46%), Positives = 43/62 (69%)
 Frame = -2

Query: 196  GRVGRADKEAHAYLFYPLKESLSDEALERLVAIEECCDLGQGFKLAERDLAIRGFGSVFD 17
            GRVGR+ +  +AY  +P  + LS+ A +RL AI+E  +LG GFK+A RDL IRG G++  
Sbjct: 921  GRVGRSSRIGYAYFLHPTNKVLSETAEDRLQAIKEFTELGSGFKIAMRDLNIRGAGNLLG 980

Query: 16   EE 11
            ++
Sbjct: 981  KQ 982


>sp|Q5HRQ2|MFD_STAEQ Transcription-repair-coupling factor
            OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A)
            GN=mfd PE=3 SV=1
          Length = 1169

 Score = 79.7 bits (195), Expect(2) = 5e-27
 Identities = 43/109 (39%), Positives = 65/109 (59%)
 Frame = -3

Query: 498  AINYEIARNGQVYYVLPRSQGLPAKKAALQRLFPSIEIGIAYGKQSATLLEETMDRFAQG 319
            A+  E++R+GQV+Y+  + Q +  K+  LQRL P   I +A+G+ +   LEETM  F   
Sbjct: 820  ALERELSRDGQVFYLYNKVQSIYEKREQLQRLMPDANIAVAHGQMTERDLEETMLSFINH 879

Query: 318  ESQLLLCTNIIESGLDIRRVNTIIVEDIHLFGLASDLPATRGELEEQIR 172
            E  +L+ T IIE+G+D+   NT+I+E+   FGL S L   RG +    R
Sbjct: 880  EYDILVTTTIIETGVDVPNANTLIIEEADRFGL-SQLYQLRGRVGRSSR 927



 Score = 60.5 bits (145), Expect(2) = 5e-27
 Identities = 29/62 (46%), Positives = 43/62 (69%)
 Frame = -2

Query: 196  GRVGRADKEAHAYLFYPLKESLSDEALERLVAIEECCDLGQGFKLAERDLAIRGFGSVFD 17
            GRVGR+ +  +AY  +P  + L++ A ERL AI+E  +LG GFK+A RDL IRG G++  
Sbjct: 920  GRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFTELGSGFKIAMRDLNIRGAGNLLG 979

Query: 16   EE 11
            ++
Sbjct: 980  KQ 981


>sp|Q4L3G0|MFD_STAHJ Transcription-repair-coupling factor
            OS=Staphylococcus haemolyticus (strain JCSC1435) GN=mfd
            PE=3 SV=1
          Length = 1169

 Score = 81.6 bits (200), Expect(2) = 1e-26
 Identities = 44/109 (40%), Positives = 65/109 (59%)
 Frame = -3

Query: 498  AINYEIARNGQVYYVLPRSQGLPAKKAALQRLFPSIEIGIAYGKQSATLLEETMDRFAQG 319
            A+  E++R+GQV+Y+  R Q +  K+  LQ L P   I +A+G+ +   LEETM  F  G
Sbjct: 820  ALERELSRDGQVFYLYNRVQSIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFING 879

Query: 318  ESQLLLCTNIIESGLDIRRVNTIIVEDIHLFGLASDLPATRGELEEQIR 172
            E  +L+ T IIE+G+D+   NT+I+E+   FGL S L   RG +    R
Sbjct: 880  EFDILVTTTIIETGVDVPNANTLIIEEADRFGL-SQLYQLRGRVGRSSR 927



 Score = 57.4 bits (137), Expect(2) = 1e-26
 Identities = 28/62 (45%), Positives = 42/62 (67%)
 Frame = -2

Query: 196  GRVGRADKEAHAYLFYPLKESLSDEALERLVAIEECCDLGQGFKLAERDLAIRGFGSVFD 17
            GRVGR+ +  +AY  +   + L++ A ERL AI+E  +LG GFK+A RDL IRG G++  
Sbjct: 920  GRVGRSSRIGYAYFLHSANKVLTETAEERLQAIKEFTELGSGFKIAMRDLNIRGAGNLLG 979

Query: 16   EE 11
            ++
Sbjct: 980  KQ 981


>sp|Q8NXZ6|MFD_STAAW Transcription-repair-coupling factor
            OS=Staphylococcus aureus (strain MW2) GN=mfd PE=3 SV=1
          Length = 1168

 Score = 79.7 bits (195), Expect(2) = 1e-26
 Identities = 43/109 (39%), Positives = 64/109 (58%)
 Frame = -3

Query: 498  AINYEIARNGQVYYVLPRSQGLPAKKAALQRLFPSIEIGIAYGKQSATLLEETMDRFAQG 319
            A+  E++R+GQV+Y+  + Q +  K+  LQ L P   I +A+G+ +   LEETM  F   
Sbjct: 819  ALERELSRDGQVFYLYNKVQSIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINN 878

Query: 318  ESQLLLCTNIIESGLDIRRVNTIIVEDIHLFGLASDLPATRGELEEQIR 172
            E  +L+ T IIE+G+D+   NT+I+ED   FGL S L   RG +    R
Sbjct: 879  EYDILVTTTIIETGVDVPNANTLIIEDADRFGL-SQLYQLRGRVGRSSR 926



 Score = 59.3 bits (142), Expect(2) = 1e-26
 Identities = 28/62 (45%), Positives = 43/62 (69%)
 Frame = -2

Query: 196  GRVGRADKEAHAYLFYPLKESLSDEALERLVAIEECCDLGQGFKLAERDLAIRGFGSVFD 17
            GRVGR+ +  +AY  +P  + L++ A +RL AI+E  +LG GFK+A RDL IRG G++  
Sbjct: 919  GRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAMRDLNIRGAGNLLG 978

Query: 16   EE 11
            ++
Sbjct: 979  KQ 980


>sp|Q6GBY5|MFD_STAAS Transcription-repair-coupling factor
            OS=Staphylococcus aureus (strain MSSA476) GN=mfd PE=3
            SV=1
          Length = 1168

 Score = 79.7 bits (195), Expect(2) = 1e-26
 Identities = 43/109 (39%), Positives = 64/109 (58%)
 Frame = -3

Query: 498  AINYEIARNGQVYYVLPRSQGLPAKKAALQRLFPSIEIGIAYGKQSATLLEETMDRFAQG 319
            A+  E++R+GQV+Y+  + Q +  K+  LQ L P   I +A+G+ +   LEETM  F   
Sbjct: 819  ALERELSRDGQVFYLYNKVQSIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINN 878

Query: 318  ESQLLLCTNIIESGLDIRRVNTIIVEDIHLFGLASDLPATRGELEEQIR 172
            E  +L+ T IIE+G+D+   NT+I+ED   FGL S L   RG +    R
Sbjct: 879  EYDILVTTTIIETGVDVPNANTLIIEDADRFGL-SQLYQLRGRVGRSSR 926



 Score = 59.3 bits (142), Expect(2) = 1e-26
 Identities = 28/62 (45%), Positives = 43/62 (69%)
 Frame = -2

Query: 196  GRVGRADKEAHAYLFYPLKESLSDEALERLVAIEECCDLGQGFKLAERDLAIRGFGSVFD 17
            GRVGR+ +  +AY  +P  + L++ A +RL AI+E  +LG GFK+A RDL IRG G++  
Sbjct: 919  GRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAMRDLNIRGAGNLLG 978

Query: 16   EE 11
            ++
Sbjct: 979  KQ 980


>sp|Q6GJG8|MFD_STAAR Transcription-repair-coupling factor
            OS=Staphylococcus aureus (strain MRSA252) GN=mfd PE=3
            SV=1
          Length = 1168

 Score = 79.7 bits (195), Expect(2) = 1e-26
 Identities = 43/109 (39%), Positives = 64/109 (58%)
 Frame = -3

Query: 498  AINYEIARNGQVYYVLPRSQGLPAKKAALQRLFPSIEIGIAYGKQSATLLEETMDRFAQG 319
            A+  E++R+GQV+Y+  + Q +  K+  LQ L P   I +A+G+ +   LEETM  F   
Sbjct: 819  ALERELSRDGQVFYLYNKVQSIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINN 878

Query: 318  ESQLLLCTNIIESGLDIRRVNTIIVEDIHLFGLASDLPATRGELEEQIR 172
            E  +L+ T IIE+G+D+   NT+I+ED   FGL S L   RG +    R
Sbjct: 879  EYDILVTTTIIETGVDVPNANTLIIEDADRFGL-SQLYQLRGRVGRSSR 926



 Score = 59.3 bits (142), Expect(2) = 1e-26
 Identities = 28/62 (45%), Positives = 43/62 (69%)
 Frame = -2

Query: 196  GRVGRADKEAHAYLFYPLKESLSDEALERLVAIEECCDLGQGFKLAERDLAIRGFGSVFD 17
            GRVGR+ +  +AY  +P  + L++ A +RL AI+E  +LG GFK+A RDL IRG G++  
Sbjct: 919  GRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAMRDLNIRGAGNLLG 978

Query: 16   EE 11
            ++
Sbjct: 979  KQ 980


>sp|Q7A7B2|MFD_STAAN Transcription-repair-coupling factor
            OS=Staphylococcus aureus (strain N315) GN=mfd PE=1 SV=1
          Length = 1168

 Score = 79.7 bits (195), Expect(2) = 1e-26
 Identities = 43/109 (39%), Positives = 64/109 (58%)
 Frame = -3

Query: 498  AINYEIARNGQVYYVLPRSQGLPAKKAALQRLFPSIEIGIAYGKQSATLLEETMDRFAQG 319
            A+  E++R+GQV+Y+  + Q +  K+  LQ L P   I +A+G+ +   LEETM  F   
Sbjct: 819  ALERELSRDGQVFYLYNKVQSIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINN 878

Query: 318  ESQLLLCTNIIESGLDIRRVNTIIVEDIHLFGLASDLPATRGELEEQIR 172
            E  +L+ T IIE+G+D+   NT+I+ED   FGL S L   RG +    R
Sbjct: 879  EYDILVTTTIIETGVDVPNANTLIIEDADRFGL-SQLYQLRGRVGRSSR 926



 Score = 59.3 bits (142), Expect(2) = 1e-26
 Identities = 28/62 (45%), Positives = 43/62 (69%)
 Frame = -2

Query: 196  GRVGRADKEAHAYLFYPLKESLSDEALERLVAIEECCDLGQGFKLAERDLAIRGFGSVFD 17
            GRVGR+ +  +AY  +P  + L++ A +RL AI+E  +LG GFK+A RDL IRG G++  
Sbjct: 919  GRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAMRDLNIRGAGNLLG 978

Query: 16   EE 11
            ++
Sbjct: 979  KQ 980


>sp|Q99WA0|MFD_STAAM Transcription-repair-coupling factor
            OS=Staphylococcus aureus (strain Mu50 / ATCC 700699)
            GN=mfd PE=1 SV=1
          Length = 1168

 Score = 79.7 bits (195), Expect(2) = 1e-26
 Identities = 43/109 (39%), Positives = 64/109 (58%)
 Frame = -3

Query: 498  AINYEIARNGQVYYVLPRSQGLPAKKAALQRLFPSIEIGIAYGKQSATLLEETMDRFAQG 319
            A+  E++R+GQV+Y+  + Q +  K+  LQ L P   I +A+G+ +   LEETM  F   
Sbjct: 819  ALERELSRDGQVFYLYNKVQSIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINN 878

Query: 318  ESQLLLCTNIIESGLDIRRVNTIIVEDIHLFGLASDLPATRGELEEQIR 172
            E  +L+ T IIE+G+D+   NT+I+ED   FGL S L   RG +    R
Sbjct: 879  EYDILVTTTIIETGVDVPNANTLIIEDADRFGL-SQLYQLRGRVGRSSR 926



 Score = 59.3 bits (142), Expect(2) = 1e-26
 Identities = 28/62 (45%), Positives = 43/62 (69%)
 Frame = -2

Query: 196  GRVGRADKEAHAYLFYPLKESLSDEALERLVAIEECCDLGQGFKLAERDLAIRGFGSVFD 17
            GRVGR+ +  +AY  +P  + L++ A +RL AI+E  +LG GFK+A RDL IRG G++  
Sbjct: 919  GRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAMRDLNIRGAGNLLG 978

Query: 16   EE 11
            ++
Sbjct: 979  KQ 980


>sp|Q5HIH2|MFD_STAAC Transcription-repair-coupling factor
            OS=Staphylococcus aureus (strain COL) GN=mfd PE=3 SV=1
          Length = 1168

 Score = 79.7 bits (195), Expect(2) = 1e-26
 Identities = 43/109 (39%), Positives = 64/109 (58%)
 Frame = -3

Query: 498  AINYEIARNGQVYYVLPRSQGLPAKKAALQRLFPSIEIGIAYGKQSATLLEETMDRFAQG 319
            A+  E++R+GQV+Y+  + Q +  K+  LQ L P   I +A+G+ +   LEETM  F   
Sbjct: 819  ALERELSRDGQVFYLYNKVQSIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINN 878

Query: 318  ESQLLLCTNIIESGLDIRRVNTIIVEDIHLFGLASDLPATRGELEEQIR 172
            E  +L+ T IIE+G+D+   NT+I+ED   FGL S L   RG +    R
Sbjct: 879  EYDILVTTTIIETGVDVPNANTLIIEDADRFGL-SQLYQLRGRVGRSSR 926



 Score = 59.3 bits (142), Expect(2) = 1e-26
 Identities = 28/62 (45%), Positives = 43/62 (69%)
 Frame = -2

Query: 196  GRVGRADKEAHAYLFYPLKESLSDEALERLVAIEECCDLGQGFKLAERDLAIRGFGSVFD 17
            GRVGR+ +  +AY  +P  + L++ A +RL AI+E  +LG GFK+A RDL IRG G++  
Sbjct: 919  GRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAMRDLNIRGAGNLLG 978

Query: 16   EE 11
            ++
Sbjct: 979  KQ 980
tr_hit_id Q9SGA4
Definition tr|Q9SGA4|Q9SGA4_ARATH Putative helicase OS=Arabidopsis thaliana
Align length 100
Score (bit) 115.0
E-value 3.0e-48
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920365|Adiantum capillus-veneris mRNA, clone:
YMU001_000136_C05.
         (518 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9SGA4|Q9SGA4_ARATH Putative helicase OS=Arabidopsis thaliana...   115   3e-48
tr|Q94JY9|Q94JY9_ARATH Putative helicase OS=Arabidopsis thaliana...   115   3e-48
tr|Q8H0S6|Q8H0S6_ARATH Putative helicase OS=Arabidopsis thaliana...   115   3e-48
tr|Q2HRX1|Q2HRX1_MEDTR Helicase, C-terminal; Haem peroxidase, pl...   112   8e-47
tr|A4RX81|A4RX81_OSTLU Predicted protein OS=Ostreococcus lucimar...    96   7e-36
tr|B5W2G2|B5W2G2_SPIMA Transcription-repair coupling factor OS=A...   105   9e-35
tr|B0JXS5|B0JXS5_MICAN Transcription-repair coupling factor OS=M...    99   1e-33
tr|Q2R377|Q2R377_ORYSJ CarD-like transcriptional regulator famil...    89   1e-32
tr|A3CBY2|A3CBY2_ORYSJ Putative uncharacterized protein OS=Oryza...    89   1e-32
tr|A2ZEZ1|A2ZEZ1_ORYSI Putative uncharacterized protein OS=Oryza...    89   1e-32
tr|B7F5N3|B7F5N3_ORYSJ cDNA clone:J013044D20, full insert sequen...    89   1e-32
tr|B1XL29|B1XL29_SYNP2 Transcription-repair coupling factor (TRC...    99   2e-32
tr|B7KI22|B7KI22_9CHRO Transcription-repair coupling factor OS=C...    97   9e-32
tr|Q019N9|Q019N9_OSTTA Putative helicase (ISS) OS=Ostreococcus t...    82   9e-32
tr|B4B3Q8|B4B3Q8_9CHRO Transcription-repair coupling factor OS=C...    96   2e-31
tr|A3IN91|A3IN91_9CHRO Transcription-repair coupling factor OS=C...    95   2e-31
tr|Q4C6S8|Q4C6S8_CROWT Transcription-repair coupling factor OS=C...    94   2e-31
tr|B7JVA1|B7JVA1_SYNP8 Transcription-repair coupling factor OS=S...    95   3e-31
tr|B4C5T7|B4C5T7_9CHRO Transcription-repair coupling factor OS=C...    95   3e-31
tr|B4WRL4|B4WRL4_9SYNE Transcription-repair coupling factor OS=S...    94   7e-31
tr|B1X1M8|B1X1M8_CYAA5 Transcription-repair coupling factor OS=C...    94   7e-31
tr|A9BAJ6|A9BAJ6_PROM4 Transcriptional-repair coupling factor OS...    93   3e-30
tr|A6EDI9|A6EDI9_9SPHI Transcription-repair coupling factor OS=P...    88   4e-29
tr|B3ER59|B3ER59_AMOA5 Putative uncharacterized protein OS=Amoeb...    87   5e-29
tr|B1H078|B1H078_UNCTG Transcription-repair coupling factor Mfd ...    88   7e-29
tr|A3DIQ2|A3DIQ2_CLOTH Transcription-repair coupling factor OS=C...    93   1e-28
tr|B4BEB0|B4BEB0_CLOTM Transcription-repair coupling factor OS=C...    93   1e-28
tr|A1ZRM8|A1ZRM8_9SPHI Transcription-repair coupling factor OS=M...    87   1e-28
tr|B8FKE5|B8FKE5_9DELT Transcription-repair coupling factor OS=D...    90   7e-28
tr|Q11PH6|Q11PH6_CYTH3 Transcription-repair coupling factor OS=C...    86   1e-27

>tr|Q9SGA4|Q9SGA4_ARATH Putative helicase OS=Arabidopsis thaliana
           GN=F1C9.16 PE=4 SV=1
          Length = 822

 Score =  115 bits (289), Expect(2) = 3e-48
 Identities = 55/100 (55%), Positives = 76/100 (76%)
 Frame = -3

Query: 516 EEQIIAAINYEIARNGQVYYVLPRSQGLPAKKAALQRLFPSIEIGIAYGKQSATLLEETM 337
           +E++I AI  E+ R GQV+YVLPR +GL      L+  FP I+I +A+GKQ +  LEETM
Sbjct: 465 KEKVIEAIKNELDRGGQVFYVLPRIKGLEEVMDFLEEAFPDIDIAMAHGKQYSKQLEETM 524

Query: 336 DRFAQGESQLLLCTNIIESGLDIRRVNTIIVEDIHLFGLA 217
           +RFAQG+ ++L+CTNI+ESGLDI+  NTII++D+  FGLA
Sbjct: 525 ERFAQGKIKILICTNIVESGLDIQNANTIIIQDVQQFGLA 564



 Score = 99.4 bits (246), Expect(2) = 3e-48
 Identities = 46/62 (74%), Positives = 55/62 (88%)
 Frame = -2

Query: 196 GRVGRADKEAHAYLFYPLKESLSDEALERLVAIEECCDLGQGFKLAERDLAIRGFGSVFD 17
           GRVGRADKEAHAYLFYP K  LSD+ALERL A+EEC +LGQGF+LAE+D+ IRGFG++F 
Sbjct: 571 GRVGRADKEAHAYLFYPDKSLLSDQALERLSALEECRELGQGFQLAEKDMGIRGFGTIFG 630

Query: 16  EE 11
           E+
Sbjct: 631 EQ 632


>tr|Q94JY9|Q94JY9_ARATH Putative helicase OS=Arabidopsis thaliana
           GN=F1C9.16 PE=2 SV=1
          Length = 823

 Score =  115 bits (289), Expect(2) = 3e-48
 Identities = 55/100 (55%), Positives = 76/100 (76%)
 Frame = -3

Query: 516 EEQIIAAINYEIARNGQVYYVLPRSQGLPAKKAALQRLFPSIEIGIAYGKQSATLLEETM 337
           +E++I AI  E+ R GQV+YVLPR +GL      L+  FP I+I +A+GKQ +  LEETM
Sbjct: 466 KEKVIEAIKNELDRGGQVFYVLPRIKGLEEVMDFLEEAFPDIDIAMAHGKQYSKQLEETM 525

Query: 336 DRFAQGESQLLLCTNIIESGLDIRRVNTIIVEDIHLFGLA 217
           +RFAQG+ ++L+CTNI+ESGLDI+  NTII++D+  FGLA
Sbjct: 526 ERFAQGKIKILICTNIVESGLDIQNANTIIIQDVQQFGLA 565



 Score = 99.4 bits (246), Expect(2) = 3e-48
 Identities = 46/62 (74%), Positives = 55/62 (88%)
 Frame = -2

Query: 196 GRVGRADKEAHAYLFYPLKESLSDEALERLVAIEECCDLGQGFKLAERDLAIRGFGSVFD 17
           GRVGRADKEAHAYLFYP K  LSD+ALERL A+EEC +LGQGF+LAE+D+ IRGFG++F 
Sbjct: 572 GRVGRADKEAHAYLFYPDKSLLSDQALERLSALEECRELGQGFQLAEKDMGIRGFGTIFG 631

Query: 16  EE 11
           E+
Sbjct: 632 EQ 633


>tr|Q8H0S6|Q8H0S6_ARATH Putative helicase OS=Arabidopsis thaliana
           GN=At3g02060 PE=2 SV=1
          Length = 822

 Score =  115 bits (289), Expect(2) = 3e-48
 Identities = 55/100 (55%), Positives = 76/100 (76%)
 Frame = -3

Query: 516 EEQIIAAINYEIARNGQVYYVLPRSQGLPAKKAALQRLFPSIEIGIAYGKQSATLLEETM 337
           +E++I AI  E+ R GQV+YVLPR +GL      L+  FP I+I +A+GKQ +  LEETM
Sbjct: 465 KEKVIEAIKNELDRGGQVFYVLPRIKGLEEVMDFLEEAFPDIDIAMAHGKQYSKQLEETM 524

Query: 336 DRFAQGESQLLLCTNIIESGLDIRRVNTIIVEDIHLFGLA 217
           +RFAQG+ ++L+CTNI+ESGLDI+  NTII++D+  FGLA
Sbjct: 525 ERFAQGKIKILICTNIVESGLDIQNANTIIIQDVQQFGLA 564



 Score = 99.4 bits (246), Expect(2) = 3e-48
 Identities = 46/62 (74%), Positives = 55/62 (88%)
 Frame = -2

Query: 196 GRVGRADKEAHAYLFYPLKESLSDEALERLVAIEECCDLGQGFKLAERDLAIRGFGSVFD 17
           GRVGRADKEAHAYLFYP K  LSD+ALERL A+EEC +LGQGF+LAE+D+ IRGFG++F 
Sbjct: 571 GRVGRADKEAHAYLFYPDKSLLSDQALERLSALEECRELGQGFQLAEKDMGIRGFGTIFG 630

Query: 16  EE 11
           E+
Sbjct: 631 EQ 632


>tr|Q2HRX1|Q2HRX1_MEDTR Helicase, C-terminal; Haem peroxidase,
           plant/fungal/bacterial (Fragment) OS=Medicago truncatula
           GN=MtrDRAFT_AC157890g1v2 PE=4 SV=1
          Length = 494

 Score =  112 bits (281), Expect(2) = 8e-47
 Identities = 51/100 (51%), Positives = 76/100 (76%)
 Frame = -3

Query: 516 EEQIIAAINYEIARNGQVYYVLPRSQGLPAKKAALQRLFPSIEIGIAYGKQSATLLEETM 337
           ++++I+AI YE+ R+GQV+YVLPR +GL      L+  FP +EI +A+GKQ +  LE+TM
Sbjct: 299 KDKVISAIKYELDRSGQVFYVLPRIKGLEEAMEFLEEAFPDVEIAVAHGKQFSKQLEDTM 358

Query: 336 DRFAQGESQLLLCTNIIESGLDIRRVNTIIVEDIHLFGLA 217
           ++F  GE ++L+ TNI+ESGLDI+  NTII++D+  FGLA
Sbjct: 359 EKFTLGEIKILISTNIVESGLDIQNANTIIIQDVQQFGLA 398



 Score = 97.8 bits (242), Expect(2) = 8e-47
 Identities = 45/62 (72%), Positives = 55/62 (88%)
 Frame = -2

Query: 196 GRVGRADKEAHAYLFYPLKESLSDEALERLVAIEECCDLGQGFKLAERDLAIRGFGSVFD 17
           GRVGRADKEA+AYLFYP K  L+D+ALERL A+EEC +LGQGF+LAERD+ IRGFG++F 
Sbjct: 405 GRVGRADKEAYAYLFYPDKSLLTDQALERLAALEECRELGQGFQLAERDMGIRGFGTIFG 464

Query: 16  EE 11
           E+
Sbjct: 465 EQ 466


>tr|A4RX81|A4RX81_OSTLU Predicted protein OS=Ostreococcus
           lucimarinus (strain CCE9901) GN=OSTLU_38583 PE=4 SV=1
          Length = 754

 Score = 95.5 bits (236), Expect(2) = 7e-36
 Identities = 44/101 (43%), Positives = 68/101 (67%)
 Frame = -3

Query: 516 EEQIIAAINYEIARNGQVYYVLPRSQGLPAKKAALQRLFPSIEIGIAYGKQSATLLEETM 337
           ++ I  AI YEI+RNGQ+YY++PR   +      L RLFP+++I  A+G+     +++ M
Sbjct: 396 DDDIRKAIEYEISRNGQIYYIVPRINMMRDACDRLLRLFPNLQIMTAHGQMDGEAIDDAM 455

Query: 336 DRFAQGESQLLLCTNIIESGLDIRRVNTIIVEDIHLFGLAS 214
           + F+ G + +L+ T I+ESGLDI   NTII+E++  FGLAS
Sbjct: 456 ESFSNGSADVLIATTIVESGLDIPNCNTIIIENVQFFGLAS 496



 Score = 78.6 bits (192), Expect(2) = 7e-36
 Identities = 37/63 (58%), Positives = 50/63 (79%), Gaps = 1/63 (1%)
 Frame = -2

Query: 196 GRVGRADKEAHAYLFYPLKES-LSDEALERLVAIEECCDLGQGFKLAERDLAIRGFGSVF 20
           GRVGRA ++A+AY+FY   ES L+  A ERL A+EECC LG+GF+L+ERD+ IRG G++F
Sbjct: 502 GRVGRAGRQAYAYMFYSADESELTTGAQERLAALEECCGLGEGFRLSERDMGIRGVGTMF 561

Query: 19  DEE 11
            E+
Sbjct: 562 GEK 564


>tr|B5W2G2|B5W2G2_SPIMA Transcription-repair coupling factor
            OS=Arthrospira maxima CS-328 GN=AmaxDRAFT_2960 PE=4 SV=1
          Length = 1167

 Score =  105 bits (262), Expect(2) = 9e-35
 Identities = 53/99 (53%), Positives = 70/99 (70%)
 Frame = -3

Query: 516  EEQIIAAINYEIARNGQVYYVLPRSQGLPAKKAALQRLFPSIEIGIAYGKQSATLLEETM 337
            +E I AAI  E+ R GQV+YV+PR +G+  K AA++ + PS  + IA+G+  A  LE  M
Sbjct: 813  QETIRAAICQELDRGGQVFYVVPRIEGIEEKSAAIREMVPSARLAIAHGQMEAGELESIM 872

Query: 336  DRFAQGESQLLLCTNIIESGLDIRRVNTIIVEDIHLFGL 220
              F+ GE+ +L+CT IIESGLDI RVNTI+VED H FGL
Sbjct: 873  LTFSAGEADILVCTTIIESGLDIPRVNTILVEDAHKFGL 911



 Score = 64.7 bits (156), Expect(2) = 9e-35
 Identities = 33/62 (53%), Positives = 46/62 (74%), Gaps = 4/62 (6%)
 Frame = -2

Query: 196  GRVGRADKEAHAYLFYPLK----ESLSDEALERLVAIEECCDLGQGFKLAERDLAIRGFG 29
            GRVGRA  +AHA+LFYP+K     +L+++A++RL AI+E   LG G++LA RDL IRG G
Sbjct: 919  GRVGRAGVQAHAWLFYPVKGDGQAALTEDAVKRLRAIKEFTQLGSGYQLAMRDLEIRGAG 978

Query: 28   SV 23
             +
Sbjct: 979  DI 980


>tr|B0JXS5|B0JXS5_MICAN Transcription-repair coupling factor
            OS=Microcystis aeruginosa (strain NIES-843) GN=MAE_20800
            PE=4 SV=1
          Length = 1160

 Score = 99.4 bits (246), Expect(2) = 1e-33
 Identities = 49/97 (50%), Positives = 64/97 (65%)
 Frame = -3

Query: 507  IIAAINYEIARNGQVYYVLPRSQGLPAKKAALQRLFPSIEIGIAYGKQSATLLEETMDRF 328
            I  AI  E+ R GQ++YV+PR +G+  K AA+Q + P   I I +G+     LE TM  F
Sbjct: 812  IRTAIRNELDRGGQIFYVVPRIEGIEEKAAAIQGMIPGARIAIGHGRMDEAELETTMLAF 871

Query: 327  AQGESQLLLCTNIIESGLDIRRVNTIIVEDIHLFGLA 217
              GE+ +L+CT I+ESGLDI RVNTII+ED   FGLA
Sbjct: 872  NNGEADILVCTTIVESGLDIPRVNTIIIEDAQKFGLA 908



 Score = 67.0 bits (162), Expect(2) = 1e-33
 Identities = 33/62 (53%), Positives = 43/62 (69%)
 Frame = -2

Query: 196  GRVGRADKEAHAYLFYPLKESLSDEALERLVAIEECCDLGQGFKLAERDLAIRGFGSVFD 17
            GRVGR+  +AHA+L YP K  L++ A ERL AI+E   LG G++LA RDL IRG G++  
Sbjct: 915  GRVGRSGVQAHAWLLYPAKAELTETARERLKAIQEFTQLGSGYQLATRDLEIRGAGNLLG 974

Query: 16   EE 11
             E
Sbjct: 975  AE 976


>tr|Q2R377|Q2R377_ORYSJ CarD-like transcriptional regulator family
           protein, expressed OS=Oryza sativa subsp. japonica
           GN=LOC_Os11g32880 PE=4 SV=2
          Length = 832

 Score = 89.0 bits (219), Expect(2) = 1e-32
 Identities = 41/100 (41%), Positives = 70/100 (70%)
 Frame = -3

Query: 516 EEQIIAAINYEIARNGQVYYVLPRSQGLPAKKAALQRLFPSIEIGIAYGKQSATLLEETM 337
           +E+ ++AI +E+AR GQV+YV+PR + +      L+   P + + +A+GK+ +  ++  M
Sbjct: 475 KERALSAIKFELARGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMAVAHGKKVSKNIQLAM 534

Query: 336 DRFAQGESQLLLCTNIIESGLDIRRVNTIIVEDIHLFGLA 217
           ++FA GE ++L+CT+IIESG+DI   NT++V+   LFGLA
Sbjct: 535 EKFACGEVKILVCTHIIESGIDIPNANTMVVQYAELFGLA 574



 Score = 73.9 bits (180), Expect(2) = 1e-32
 Identities = 38/62 (61%), Positives = 45/62 (72%)
 Frame = -2

Query: 196 GRVGRADKEAHAYLFYPLKESLSDEALERLVAIEECCDLGQGFKLAERDLAIRGFGSVFD 17
           GRVGR+  E  AYLFY  K  LS  A +RL AIEE  DLGQGF +AE+D+ IRGFGS+F 
Sbjct: 581 GRVGRSGTEGFAYLFYTDKSLLSKIATDRLGAIEEHSDLGQGFHVAEKDMGIRGFGSLFG 640

Query: 16  EE 11
           E+
Sbjct: 641 EQ 642


>tr|A3CBY2|A3CBY2_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_032804 PE=4 SV=1
          Length = 832

 Score = 89.0 bits (219), Expect(2) = 1e-32
 Identities = 41/100 (41%), Positives = 70/100 (70%)
 Frame = -3

Query: 516 EEQIIAAINYEIARNGQVYYVLPRSQGLPAKKAALQRLFPSIEIGIAYGKQSATLLEETM 337
           +E+ ++AI +E+AR GQV+YV+PR + +      L+   P + + +A+GK+ +  ++  M
Sbjct: 475 KERALSAIKFELARGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMAVAHGKKVSKNIQLAM 534

Query: 336 DRFAQGESQLLLCTNIIESGLDIRRVNTIIVEDIHLFGLA 217
           ++FA GE ++L+CT+IIESG+DI   NT++V+   LFGLA
Sbjct: 535 EKFACGEVKILVCTHIIESGIDIPNANTMVVQYAELFGLA 574



 Score = 73.9 bits (180), Expect(2) = 1e-32
 Identities = 38/62 (61%), Positives = 45/62 (72%)
 Frame = -2

Query: 196 GRVGRADKEAHAYLFYPLKESLSDEALERLVAIEECCDLGQGFKLAERDLAIRGFGSVFD 17
           GRVGR+  E  AYLFY  K  LS  A +RL AIEE  DLGQGF +AE+D+ IRGFGS+F 
Sbjct: 581 GRVGRSGTEGFAYLFYTDKSLLSKIATDRLGAIEEHSDLGQGFHVAEKDMGIRGFGSLFG 640

Query: 16  EE 11
           E+
Sbjct: 641 EQ 642


>tr|A2ZEZ1|A2ZEZ1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_36354 PE=4 SV=1
          Length = 640

 Score = 89.0 bits (219), Expect(2) = 1e-32
 Identities = 41/100 (41%), Positives = 70/100 (70%)
 Frame = -3

Query: 516 EEQIIAAINYEIARNGQVYYVLPRSQGLPAKKAALQRLFPSIEIGIAYGKQSATLLEETM 337
           +E+ ++AI +E+AR GQV+YV+PR + +      L+   P + + +A+GK+ +  ++  M
Sbjct: 283 KERALSAIKFELARGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMAVAHGKKVSKNIQLAM 342

Query: 336 DRFAQGESQLLLCTNIIESGLDIRRVNTIIVEDIHLFGLA 217
           ++FA GE ++L+CT+IIESG+DI   NT++V+   LFGLA
Sbjct: 343 EKFACGEVKILVCTHIIESGIDIPNANTMVVQYAELFGLA 382



 Score = 73.9 bits (180), Expect(2) = 1e-32
 Identities = 38/62 (61%), Positives = 45/62 (72%)
 Frame = -2

Query: 196 GRVGRADKEAHAYLFYPLKESLSDEALERLVAIEECCDLGQGFKLAERDLAIRGFGSVFD 17
           GRVGR+  E  AYLFY  K  LS  A +RL AIEE  DLGQGF +AE+D+ IRGFGS+F 
Sbjct: 389 GRVGRSGTEGFAYLFYTDKSLLSKIATDRLGAIEEHSDLGQGFHVAEKDMGIRGFGSLFG 448

Query: 16  EE 11
           E+
Sbjct: 449 EQ 450