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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920374
Clone id YMU001_000136_D03
Library
Length 468
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000136_D03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CCAGTGAGCCACGAAGGCAGTGGCAGAAGTTGAAAAACAACAAAGAAAGGAGAAGGCCAA
GGCGGCGAGTGGGGTCGCTGAAAGTAAGGTTCGGAGGAGACTTACTCGTGAAGTTTCTCA
TCGGAGAGGAAGAATTGTCACTATTGGCTTAGCTCGTTACAAAATGGACCCCTTGGGACG
AACATGACAAAGGCTTCCTGATCAGTGGTGTGGAAATGCTGAAGTCAAACAAAGTACTAA
CTCAGCCATATTGTCGACGCCAAGGAGACTATCTTATGATGGGACAGAGTATGTACGAAT
TGGGAATGGCCATAAGCTTGTAAGGGATCCAAAGGCAGCTACACGAGCTTTAGCCAGTGA
AAAAGTGCGATGGAGTCTTCACACAGCGCGGTCTCGTCGAGCCAAAAGGCAGCAGTATTG
TCTCTTCTTTACGCGGTTTGGGAAATGCAACAGAAGTGATGGTGATTG
■■Homology search results ■■ -
sp_hit_id Q9LPK3
Definition sp|Q9LPK3|Y1158_ARATH Putative zinc finger CCCH domain-containing protein At1g21580 OS=Arabidopsis thaliana
Align length 68
Score (bit) 102.0
E-value 1.0e-21
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920374|Adiantum capillus-veneris mRNA, clone:
YMU001_000136_D03.
         (468 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9LPK3|Y1158_ARATH Putative zinc finger CCCH domain-containin...   102   1e-21
sp|Q8IXZ2|ZC3H3_HUMAN Zinc finger CCCH domain-containing protein...    47   4e-05
sp|Q8CHP0|ZC3H3_MOUSE Zinc finger CCCH domain-containing protein...    42   0.002
sp|Q86K40|Y9144_DICDI Putative uncharacterized protein DDB_G0277...    31   2.3  
sp|Q9KF52|PUR2_BACHD Phosphoribosylamine--glycine ligase OS=Baci...    30   4.0  
sp|A4QDP9|LEU3_CORGB 3-isopropylmalate dehydrogenase OS=Coryneba...    30   5.2  
sp|Q9CI17|MURA1_LACLA UDP-N-acetylglucosamine 1-carboxyvinyltran...    30   6.8  
sp|P94631|LEU3_CORGL 3-isopropylmalate dehydrogenase OS=Coryneba...    29   8.9  

>sp|Q9LPK3|Y1158_ARATH Putative zinc finger CCCH domain-containing
            protein At1g21580 OS=Arabidopsis thaliana GN=At1g21580
            PE=1 SV=1
          Length = 2123

 Score =  102 bits (253), Expect = 1e-21
 Identities = 46/68 (67%), Positives = 54/68 (79%)
 Frame = +2

Query: 260  PRRLSYDGTEYVRIGNGHKLVRDPKAATRALASEKVRWSLHTARSRRAKRQQYCLFFTRF 439
            P+RL     EYVR GNG++LVRDPK  TR LA+EKVRWSLH AR R AK+++YC FFTRF
Sbjct: 1846 PKRLVIGNEEYVRFGNGNQLVRDPKKRTRVLANEKVRWSLHNARLRLAKKKKYCQFFTRF 1905

Query: 440  GKCNRSDG 463
            GKCN+ DG
Sbjct: 1906 GKCNKDDG 1913


>sp|Q8IXZ2|ZC3H3_HUMAN Zinc finger CCCH domain-containing protein 3
           OS=Homo sapiens GN=ZC3H3 PE=1 SV=2
          Length = 948

 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 21/45 (46%), Positives = 32/45 (71%), Gaps = 3/45 (6%)
 Frame = +2

Query: 335 AATRALASEKVRWSL---HTARSRRAKRQQYCLFFTRFGKCNRSD 460
           + +R+LAS  V+ SL     AR RR KR++YC+++ RFG+CNR +
Sbjct: 642 SCSRSLASRAVQRSLAIIRQARQRREKRKEYCMYYNRFGRCNRGE 686


>sp|Q8CHP0|ZC3H3_MOUSE Zinc finger CCCH domain-containing protein 3
           OS=Mus musculus GN=Zc3h3 PE=2 SV=1
          Length = 950

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 16/43 (37%), Positives = 31/43 (72%), Gaps = 3/43 (6%)
 Frame = +2

Query: 341 TRALASEKVRWSL---HTARSRRAKRQQYCLFFTRFGKCNRSD 460
           +R+LAS  ++ SL     A+ ++ K+++YC+++ RFG+CNR +
Sbjct: 639 SRSLASRAIQRSLAIIRQAKQKKEKKREYCMYYNRFGRCNRGE 681


>sp|Q86K40|Y9144_DICDI Putative uncharacterized protein DDB_G0277255
           OS=Dictyostelium discoideum GN=DDB_G0277255 PE=4 SV=1
          Length = 1123

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
 Frame = -3

Query: 199 RKPLSCSSQGVHFVTS*ANSDNSSSPMRNFTSK----SPPNLTFSDPT 68
           +KPL+ S+  +HF+T+  NSD   +P+ N +S     SP     S PT
Sbjct: 327 KKPLNNSNSNIHFLTNQQNSD---TPLSNSSSSTPTLSPAQSAISSPT 371


>sp|Q9KF52|PUR2_BACHD Phosphoribosylamine--glycine ligase
           OS=Bacillus halodurans GN=purD PE=3 SV=1
          Length = 428

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 29/112 (25%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
 Frame = +3

Query: 126 EEELSLLA*LVTKWTPWDEHDKGFLISGVEMLKSNKVLTQPYCRRQGDYLMM--GQSMYE 299
           +E+  L   L TK  P   ++KG+ ISG+E L+ + ++     +R+ + L+   G+ +  
Sbjct: 322 DEQAVLGVVLATKGYP-GSYEKGYTISGLEQLEDDTLVFHAGTKREEEELVTNGGRVLLV 380

Query: 300 LGMAISL*GIQRQLHEL*PVKKCDGVFTQRGLVEPKGSSIVSSLRGLGNATE 455
              A +L   Q  ++E     K DG+F ++ +    GS  ++  R + + TE
Sbjct: 381 AKQASTLREAQAAVYEELNKVKSDGLFYRKDI----GSKAIAE-RAVSSQTE 427


>sp|A4QDP9|LEU3_CORGB 3-isopropylmalate dehydrogenase
           OS=Corynebacterium glutamicum (strain R) GN=leuB PE=3
           SV=1
          Length = 340

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 293 VRIGNGHKLVRDPKAATRALASEKVRWSLHTARSRRAK 406
           +R+G  H++  +    TR  A   +R++   A+SRR K
Sbjct: 136 IRVGTAHEIANETSVNTRYGAERVIRYAFELAQSRRKK 173


>sp|Q9CI17|MURA1_LACLA UDP-N-acetylglucosamine
           1-carboxyvinyltransferase 1 OS=Lactococcus lactis subsp.
           lactis GN=murA1 PE=3 SV=1
          Length = 427

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +3

Query: 96  GDLLVKFLIGEEELSLLA*LVTKWTPWDEHDKGFLISGVEMLKSNKVLTQPY 251
           GD+L+K  I E    L++ L      + + + G  + G E LK+  V T P+
Sbjct: 252 GDVLIKDAIAEHNRPLISKLSEMGVNFIQEESGLRVVGPEKLKATSVKTLPH 303


>sp|P94631|LEU3_CORGL 3-isopropylmalate dehydrogenase
           OS=Corynebacterium glutamicum GN=leuB PE=3 SV=1
          Length = 340

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 293 VRIGNGHKLVRDPKAATRALASEKVRWSLHTARSRRAK 406
           +R+G  H++  +    TR  A   +R++   A+SRR K
Sbjct: 136 IRVGTPHEIANETSVNTRYGAERVIRYAFELAQSRRKK 173
tr_hit_id A7NVJ3
Definition tr|A7NVJ3|A7NVJ3_VITVI Chromosome chr18 scaffold_1, whole genome shotgun sequence OS=Vitis vinifera
Align length 134
Score (bit) 122.0
E-value 1.0e-26
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920374|Adiantum capillus-veneris mRNA, clone:
YMU001_000136_D03.
         (468 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7NVJ3|A7NVJ3_VITVI Chromosome chr18 scaffold_1, whole genome...   122   1e-26
tr|Q3ED78|Q3ED78_ARATH Uncharacterized protein At1g21570.1 (At1g...   114   2e-24
tr|B8B0H6|B8B0H6_ORYSI Putative uncharacterized protein OS=Oryza...    89   8e-17
tr|Q67WF0|Q67WF0_ORYSJ Os06g0638000 protein OS=Oryza sativa subs...    89   1e-16
tr|A3BDW5|A3BDW5_ORYSJ Putative uncharacterized protein OS=Oryza...    89   1e-16
tr|A9RV34|A9RV34_PHYPA Predicted protein OS=Physcomitrella paten...    83   6e-15
tr|B7QCC1|B7QCC1_IXOSC ZC3H3 protein, putative (Fragment) OS=Ixo...    48   3e-04
tr|Q5F3U1|Q5F3U1_CHICK Putative uncharacterized protein OS=Gallu...    43   0.009
tr|Q3UUL4|Q3UUL4_MOUSE Putative uncharacterized protein OS=Mus m...    42   0.020
tr|Q54X64|Q54X64_DICDI Putative uncharacterized protein OS=Dicty...    40   0.077
tr|Q4T2H8|Q4T2H8_TETNG Chromosome undetermined SCAF10271, whole ...    38   0.22 
tr|Q3KUR6|Q3KUR6_XENTR Smad-interacting and CPSF-like protein OS...    38   0.22 
tr|Q0P4U9|Q0P4U9_XENTR Zinc finger CCCH-type containing 3 OS=Xen...    38   0.22 
tr|B6NUY8|B6NUY8_BRAFL Putative uncharacterized protein (Fragmen...    38   0.29 
tr|A7SQV2|A7SQV2_NEMVE Predicted protein (Fragment) OS=Nematoste...    36   0.85 
tr|Q5AWK6|Q5AWK6_EMENI Putative uncharacterized protein OS=Emeri...    35   1.9  
tr|Q6C1P5|Q6C1P5_YARLI YALI0F14531p OS=Yarrowia lipolytica GN=YA...    35   2.5  
tr|Q6YVI6|Q6YVI6_ORYSJ Putative DNA helicase OS=Oryza sativa sub...    34   4.2  
tr|B8AH91|B8AH91_ORYSI Putative uncharacterized protein OS=Oryza...    34   4.2  
tr|A3AAI3|A3AAI3_ORYSJ Putative uncharacterized protein OS=Oryza...    34   4.2  
tr|Q9M1N2|Q9M1N2_ARATH Putative uncharacterized protein T32A11_1...    33   5.5  
tr|A7EZL0|A7EZL0_SCLS1 Putative uncharacterized protein OS=Scler...    33   7.2  
tr|Q0FTY8|Q0FTY8_9RHOB ABC transporter, ATP-binding/permease pro...    33   9.4  

>tr|A7NVJ3|A7NVJ3_VITVI Chromosome chr18 scaffold_1, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00015456001
           PE=4 SV=1
          Length = 624

 Score =  122 bits (305), Expect = 1e-26
 Identities = 68/134 (50%), Positives = 87/134 (64%), Gaps = 2/134 (1%)
 Frame = +2

Query: 68  SGVAESKVRRRLTREVSHRRGRIVTIGLARYKMDPLGRT*QRLPD--QWCGNAEVKQSTN 241
           S ++E++ R   +RE      RI  +G  RYKMD   RT QR+ D    C +A ++   N
Sbjct: 278 SVISETESRNHSSRE------RIFRVGSVRYKMDSSRRTLQRISDGDSTC-SAALQSEKN 330

Query: 242 SAILSTPRRLSYDGTEYVRIGNGHKLVRDPKAATRALASEKVRWSLHTARSRRAKRQQYC 421
           +     PRRL     EYV+IGNG++L+R+PK  TR LASEKVRWSLHTAR R AK+ +YC
Sbjct: 331 AKKPYIPRRLLIGNDEYVQIGNGNQLIRNPKKRTRILASEKVRWSLHTARLRLAKKWKYC 390

Query: 422 LFFTRFGKCNRSDG 463
            FFTRFGKCN+ DG
Sbjct: 391 QFFTRFGKCNKDDG 404


>tr|Q3ED78|Q3ED78_ARATH Uncharacterized protein At1g21570.1
           (At1g21570) OS=Arabidopsis thaliana GN=At1g21570 PE=2
           SV=1
          Length = 470

 Score =  114 bits (286), Expect = 2e-24
 Identities = 61/116 (52%), Positives = 74/116 (63%), Gaps = 3/116 (2%)
 Frame = +2

Query: 125 RGRIVTIGLARYKMDPLGRT*QRLPD---QWCGNAEVKQSTNSAILSTPRRLSYDGTEYV 295
           R R+   G  RYKMD   RT QR+ D      G +E  +      +  P+RL     EYV
Sbjct: 147 RERVFRFGSLRYKMDSSRRTLQRISDVDSPCSGPSENGKGVKRPFI--PKRLVIGNEEYV 204

Query: 296 RIGNGHKLVRDPKAATRALASEKVRWSLHTARSRRAKRQQYCLFFTRFGKCNRSDG 463
           R GNG++LVRDPK  TR LA+EKVRWSLH AR R AK+++YC FFTRFGKCN+ DG
Sbjct: 205 RFGNGNQLVRDPKKRTRVLANEKVRWSLHNARLRLAKKKKYCQFFTRFGKCNKDDG 260


>tr|B8B0H6|B8B0H6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_23831 PE=4 SV=1
          Length = 632

 Score = 89.4 bits (220), Expect = 8e-17
 Identities = 44/78 (56%), Positives = 53/78 (67%)
 Frame = +2

Query: 230 QSTNSAILSTPRRLSYDGTEYVRIGNGHKLVRDPKAATRALASEKVRWSLHTARSRRAKR 409
           Q  NS   S+  R      EYVR+  G++LVR+PK   R LAS+KVRWSLHT RSR AK+
Sbjct: 336 QLRNSCQSSSDLRKPSTCNEYVRVSKGNQLVRNPKNVIRMLASDKVRWSLHTVRSRLAKK 395

Query: 410 QQYCLFFTRFGKCNRSDG 463
           QQYC FFTRFG+C +  G
Sbjct: 396 QQYCQFFTRFGECKKPRG 413


>tr|Q67WF0|Q67WF0_ORYSJ Os06g0638000 protein OS=Oryza sativa subsp.
            japonica GN=P0523F01.18 PE=4 SV=1
          Length = 2068

 Score = 89.0 bits (219), Expect = 1e-16
 Identities = 44/78 (56%), Positives = 53/78 (67%)
 Frame = +2

Query: 230  QSTNSAILSTPRRLSYDGTEYVRIGNGHKLVRDPKAATRALASEKVRWSLHTARSRRAKR 409
            Q  NS   S+  R      EYVR+  G++LVR+PK   R LAS+KVRWSLHT RSR AK+
Sbjct: 1772 QLRNSRQSSSDLRKPSTCNEYVRVSKGNQLVRNPKNVIRMLASDKVRWSLHTVRSRLAKK 1831

Query: 410  QQYCLFFTRFGKCNRSDG 463
            QQYC FFTRFG+C +  G
Sbjct: 1832 QQYCQFFTRFGECKKPRG 1849


>tr|A3BDW5|A3BDW5_ORYSJ Putative uncharacterized protein OS=Oryza
            sativa subsp. japonica GN=OsJ_021237 PE=4 SV=1
          Length = 1985

 Score = 89.0 bits (219), Expect = 1e-16
 Identities = 44/78 (56%), Positives = 53/78 (67%)
 Frame = +2

Query: 230  QSTNSAILSTPRRLSYDGTEYVRIGNGHKLVRDPKAATRALASEKVRWSLHTARSRRAKR 409
            Q  NS   S+  R      EYVR+  G++LVR+PK   R LAS+KVRWSLHT RSR AK+
Sbjct: 1689 QLRNSRQSSSDLRKPSTCNEYVRVSKGNQLVRNPKNVIRMLASDKVRWSLHTVRSRLAKK 1748

Query: 410  QQYCLFFTRFGKCNRSDG 463
            QQYC FFTRFG+C +  G
Sbjct: 1749 QQYCQFFTRFGECKKPRG 1766


>tr|A9RV34|A9RV34_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_161158 PE=4 SV=1
          Length = 2054

 Score = 83.2 bits (204), Expect = 6e-15
 Identities = 37/61 (60%), Positives = 45/61 (73%)
 Frame = +2

Query: 281  GTEYVRIGNGHKLVRDPKAATRALASEKVRWSLHTARSRRAKRQQYCLFFTRFGKCNRSD 460
            G  YVR G G++LVRD +   R  ASEKVRWSLH AR RRAK+Q +C+++TRFG C R D
Sbjct: 1769 GAVYVRKGFGNQLVRDSRTTARVFASEKVRWSLHNARLRRAKKQAFCVYYTRFGVCKRGD 1828

Query: 461  G 463
            G
Sbjct: 1829 G 1829


>tr|B7QCC1|B7QCC1_IXOSC ZC3H3 protein, putative (Fragment) OS=Ixodes
           scapularis GN=IscW_ISCW022116 PE=4 SV=1
          Length = 291

 Score = 47.8 bits (112), Expect = 3e-04
 Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 5/122 (4%)
 Frame = +2

Query: 104 TREVSHRRGRIVTIGLARYKMDPLGRT*QRLPDQWCGNAEVKQSTNSAILSTPRRLSYDG 283
           T   S R+ RI+ I    Y MD  G+  +R P          QS  +++     R+   G
Sbjct: 35  TSRGSSRQQRILVIRGTTYHMDVSGKVLRRAPAS-------SQSPGASL----SRIDIGG 83

Query: 284 TEYVRIGNGHKLVRDPKAATRALASEKVRWSLH---TARSRRAKRQ--QYCLFFTRFGKC 448
             +V    G  L + P + TR   S  +  S+H   T  +R+ +R+  +YC+FF RFG+C
Sbjct: 84  KTFVERLPG-VLSQTPSSETRTYLSRTINRSIHRMRTVNTRKLERRSDRYCMFFNRFGRC 142

Query: 449 NR 454
           N+
Sbjct: 143 NK 144


>tr|Q5F3U1|Q5F3U1_CHICK Putative uncharacterized protein OS=Gallus
           gallus GN=RCJMB04_7c5 PE=2 SV=1
          Length = 956

 Score = 42.7 bits (99), Expect = 0.009
 Identities = 18/45 (40%), Positives = 31/45 (68%), Gaps = 3/45 (6%)
 Frame = +2

Query: 335 AATRALASEKVRWSL---HTARSRRAKRQQYCLFFTRFGKCNRSD 460
           A +R +AS  V+ SL     A+ ++ K+++YC+++ RFGKCNR +
Sbjct: 663 ATSRYIASRAVQRSLAIIRQAKQKKEKKKEYCMYYNRFGKCNRGE 707


>tr|Q3UUL4|Q3UUL4_MOUSE Putative uncharacterized protein OS=Mus
           musculus GN=Zc3h3 PE=2 SV=1
          Length = 950

 Score = 41.6 bits (96), Expect = 0.020
 Identities = 16/43 (37%), Positives = 31/43 (72%), Gaps = 3/43 (6%)
 Frame = +2

Query: 341 TRALASEKVRWSL---HTARSRRAKRQQYCLFFTRFGKCNRSD 460
           +R+LAS  ++ SL     A+ ++ K+++YC+++ RFG+CNR +
Sbjct: 639 SRSLASRAIQRSLAIIRQAKQKKEKKREYCMYYNRFGRCNRGE 681


>tr|Q54X64|Q54X64_DICDI Putative uncharacterized protein
           OS=Dictyostelium discoideum GN=DDB_0218155 PE=4 SV=1
          Length = 611

 Score = 39.7 bits (91), Expect = 0.077
 Identities = 16/39 (41%), Positives = 27/39 (69%), Gaps = 4/39 (10%)
 Frame = +2

Query: 356 SEKVRWSLHTAR----SRRAKRQQYCLFFTRFGKCNRSD 460
           SEK++ +++  +     ++ K++QYCLFF RFGKCN  +
Sbjct: 340 SEKIKEAINKKKLEVSEKKKKKKQYCLFFNRFGKCNNGN 378