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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920377
Clone id YMU001_000136_D07
Library
Length 474
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000136_D07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTTTTTTTGGATAACCATGAAAATCTGTATTTTGAAAATGCAGGCAGCCTTAACAAATAA
ATATCAACGCGACTGATACCATAACAGCTACAACAAACTCTCCAAAAAAAGAACGACAAG
TCCAGCAAATTCATCCTTAATAAGGGAGCATATGGTAAGTGAGTTGAAAGAGTGGCATAA
TTTCCTTCAAGCTGCAGCAACAATGGGTATGCTCCCTTGTTTCTGCAAGGGTTCCACTGG
ACCTGTAGCTGTGGCTGGGGTGGCTGCTGGGTCAGCAGGTTTCACATCAGAACCCTCTGC
ACCCGGCGCCGCCGCCGCCGCCGGAGGTGCGGGTGGCGGAGCCTTCATATGAGCAGGTGG
ATTGTGCTTCAGCTTCACCAAGACCTGCCTCATACGAGTAAGGTCTGTCACCTTTCCTGT
CTTGGGGCCATGGTTGAACACAACAGAGGGCTTTTTCTTATCCTTATTGCCTCT
■■Homology search results ■■ -
sp_hit_id Q25464
Definition sp|Q25464|FP2_MYTGA Adhesive plaque matrix protein 2 OS=Mytilus galloprovincialis
Align length 50
Score (bit) 33.9
E-value 0.38
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920377|Adiantum capillus-veneris mRNA, clone:
YMU001_000136_D07.
         (474 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q25464|FP2_MYTGA Adhesive plaque matrix protein 2 OS=Mytilus ...    34   0.38 
sp|Q9WTS6|TEN3_MOUSE Teneurin-3 OS=Mus musculus GN=Odz3 PE=2 SV=1      33   0.85 
sp|Q9P273|TEN3_HUMAN Teneurin-3 OS=Homo sapiens GN=ODZ3 PE=2 SV=3      33   0.85 
sp|Q3UHK6|TEN4_MOUSE Teneurin-4 OS=Mus musculus GN=Odz4 PE=2 SV=2      32   1.5  
sp|Q6N022|TEN4_HUMAN Teneurin-4 OS=Homo sapiens GN=ODZ4 PE=2 SV=2      32   1.5  
sp|Q9W7R4|TEN3_DANRE Teneurin-3 OS=Danio rerio GN=odz3 PE=2 SV=1       31   3.2  
sp|Q9WTS4|TEN1_MOUSE Teneurin-1 OS=Mus musculus GN=Odz1 PE=1 SV=1      29   9.4  
sp|Q9UKZ4|TEN1_HUMAN Teneurin-1 OS=Homo sapiens GN=ODZ1 PE=1 SV=2      29   9.4  
sp|Q9W6V6|TEN1_CHICK Teneurin-1 OS=Gallus gallus GN=ODZ1 PE=2 SV=1     29   9.4  
sp|P46530|NOTC1_DANRE Neurogenic locus notch homolog protein 1 O...    29   9.4  

>sp|Q25464|FP2_MYTGA Adhesive plaque matrix protein 2 OS=Mytilus
           galloprovincialis GN=FP2 PE=2 SV=1
          Length = 473

 Score = 33.9 bits (76), Expect = 0.38
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +1

Query: 118 KSSKFILNKGAYGK*VERVA*FPSSCSNNGY-APLFLQGFHWTCSCGWGG 264
           K+ K +   G +G+  E+    P+ C NNG  +PL   G+  TCS G+ G
Sbjct: 102 KTFKCVCRNGNFGRLCEKNVCSPNPCKNNGKCSPLGKTGYKCTCSGGYTG 151


>sp|Q9WTS6|TEN3_MOUSE Teneurin-3 OS=Mus musculus GN=Odz3 PE=2 SV=1
          Length = 2715

 Score = 32.7 bits (73), Expect = 0.85
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +1

Query: 184 PSSCSNNGYAPLFLQGFHWTCSCGW--GGCWVSRFHIRTLCT 303
           P  C++NG   L   G+H  C  GW   GC V+   + TLCT
Sbjct: 753 PGLCNSNGRCTLDQNGWHCVCQPGWRGAGCDVA---METLCT 791


>sp|Q9P273|TEN3_HUMAN Teneurin-3 OS=Homo sapiens GN=ODZ3 PE=2 SV=3
          Length = 2699

 Score = 32.7 bits (73), Expect = 0.85
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +1

Query: 184 PSSCSNNGYAPLFLQGFHWTCSCGW--GGCWVSRFHIRTLCT 303
           P  C++NG   L   G+H  C  GW   GC V+   + TLCT
Sbjct: 744 PGLCNSNGRCTLDQNGWHCVCQPGWRGAGCDVA---METLCT 782


>sp|Q3UHK6|TEN4_MOUSE Teneurin-4 OS=Mus musculus GN=Odz4 PE=2 SV=2
          Length = 2771

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 184 PSSCSNNGYAPLFLQGFHWTCSCGWGG 264
           P  C+ NG   L L G+H  C  GW G
Sbjct: 803 PGLCNGNGRCTLDLNGWHCVCQLGWRG 829


>sp|Q6N022|TEN4_HUMAN Teneurin-4 OS=Homo sapiens GN=ODZ4 PE=2 SV=2
          Length = 2769

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 184 PSSCSNNGYAPLFLQGFHWTCSCGWGG 264
           P  C+ NG   L L G+H  C  GW G
Sbjct: 801 PGLCNGNGRCTLDLNGWHCVCQLGWRG 827


>sp|Q9W7R4|TEN3_DANRE Teneurin-3 OS=Danio rerio GN=odz3 PE=2 SV=1
          Length = 2590

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +1

Query: 184 PSSCSNNGYAPLFLQGFHWTCSCGW--GGCWVSRFHIRTLC 300
           P  C++NG   L   G+H  C  GW   GC V+   + TLC
Sbjct: 634 PGLCNSNGRCTLDQNGWHCVCQPGWRGAGCDVA---METLC 671


>sp|Q9WTS4|TEN1_MOUSE Teneurin-1 OS=Mus musculus GN=Odz1 PE=1 SV=1
          Length = 2731

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +1

Query: 184 PSSCSNNGYAPLFLQGFHWTCSCGWGG 264
           P  C  NG   L   G+H  C  GW G
Sbjct: 765 PGLCFGNGRCTLDQNGWHCVCQVGWSG 791


>sp|Q9UKZ4|TEN1_HUMAN Teneurin-1 OS=Homo sapiens GN=ODZ1 PE=1 SV=2
          Length = 2725

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +1

Query: 184 PSSCSNNGYAPLFLQGFHWTCSCGWGG 264
           P  C  NG   L   G+H  C  GW G
Sbjct: 766 PGLCFGNGRCTLDQNGWHCVCQVGWSG 792


>sp|Q9W6V6|TEN1_CHICK Teneurin-1 OS=Gallus gallus GN=ODZ1 PE=2 SV=1
          Length = 2705

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +1

Query: 184 PSSCSNNGYAPLFLQGFHWTCSCGWGG 264
           P  C  NG   L   G+H  C  GW G
Sbjct: 739 PGLCYGNGRCTLDQNGWHCVCQVGWSG 765


>sp|P46530|NOTC1_DANRE Neurogenic locus notch homolog protein 1
           OS=Danio rerio GN=notch1a PE=2 SV=1
          Length = 2437

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 184 PSSCSNNGYAPLFLQGFHWTCSCGWGG 264
           P++C N G     + GFH  C  GW G
Sbjct: 302 PNACQNGGTCHNTIGGFHCVCVNGWTG 328
tr_hit_id B8LRT8
Definition tr|B8LRT8|B8LRT8_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 36
Score (bit) 61.6
E-value 2.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920377|Adiantum capillus-veneris mRNA, clone:
YMU001_000136_D07.
         (474 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8LRT8|B8LRT8_PICSI Putative uncharacterized protein OS=Picea...    62   2e-08
tr|A7Q3F1|A7Q3F1_VITVI Chromosome chr13 scaffold_48, whole genom...    56   1e-06
tr|A5B4U6|A5B4U6_VITVI Putative uncharacterized protein OS=Vitis...    56   1e-06
tr|Q7XKE9|Q7XKE9_ORYSJ Os04g0679100 protein OS=Oryza sativa subs...    55   2e-06
tr|Q259D4|Q259D4_ORYSA H0801D08.11 protein OS=Oryza sativa GN=H0...    55   2e-06
tr|A2XZ05|A2XZ05_ORYSI Putative uncharacterized protein OS=Oryza...    55   2e-06
tr|Q8L9R8|Q8L9R8_ARATH Putative uncharacterized protein OS=Arabi...    54   4e-06
tr|O04209|O04209_ARATH Expressed protein (Putative uncharacteriz...    54   4e-06
tr|Q0VJA2|Q0VJA2_PLAAC Putative uncharacterized protein (Fragmen...    53   9e-06
tr|B4FJF0|B4FJF0_MAIZE Putative uncharacterized protein OS=Zea m...    53   9e-06
tr|B7FKY8|B7FKY8_MEDTR Putative uncharacterized protein (Fragmen...    52   1e-05
tr|A9PEB0|A9PEB0_POPTR Putative uncharacterized protein OS=Popul...    52   2e-05
tr|A6N039|A6N039_ORYSI Putative uncharacterized protein (Fragmen...    50   4e-05
tr|A5BXH1|A5BXH1_VITVI Putative uncharacterized protein OS=Vitis...    50   4e-05
tr|Q8L8Y7|Q8L8Y7_ARATH Putative uncharacterized protein OS=Arabi...    49   1e-04
tr|O65024|O65024_ARATH Putative uncharacterized protein OS=Arabi...    49   1e-04
tr|Q5Z402|Q5Z402_ORYSJ Os06g0731800 protein OS=Oryza sativa subs...    49   1e-04
tr|A3BFN9|A3BFN9_ORYSJ Putative uncharacterized protein OS=Oryza...    49   1e-04
tr|B4FIZ5|B4FIZ5_MAIZE Putative uncharacterized protein OS=Zea m...    48   2e-04
tr|A9PA40|A9PA40_POPTR Putative uncharacterized protein OS=Popul...    48   3e-04
tr|Q9SKU1|Q9SKU1_ARATH Expressed protein (At2g20760) (At2g20760/...    46   8e-04
tr|Q8LG44|Q8LG44_ARATH Putative uncharacterized protein OS=Arabi...    46   8e-04
tr|A2YL02|A2YL02_ORYSI Putative uncharacterized protein OS=Oryza...    45   0.002
tr|A9RIQ2|A9RIQ2_PHYPA Predicted protein OS=Physcomitrella paten...    44   0.004
tr|A9RIQ1|A9RIQ1_PHYPA Predicted protein OS=Physcomitrella paten...    44   0.004
tr|A9SK72|A9SK72_PHYPA Predicted protein (Fragment) OS=Physcomit...    44   0.005
tr|Q6Z3A8|Q6Z3A8_ORYSJ Putative uncharacterized protein P0038F09...    42   0.015
tr|A6N190|A6N190_ORYSI Putative uncharacterized protein (Fragmen...    40   0.044
tr|Q4SZV7|Q4SZV7_TETNG Chromosome undetermined SCAF11464, whole ...    35   1.4  
tr|A7PP35|A7PP35_VITVI Chromosome chr8 scaffold_23, whole genome...    35   1.9  

>tr|B8LRT8|B8LRT8_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 354

 Score = 61.6 bits (148), Expect = 2e-08
 Identities = 27/36 (75%), Positives = 32/36 (88%)
 Frame = -1

Query: 468 NKDKKKPSVVFNHGPKTGKVTDLTRMRQVLVKLKHN 361
           +KDKKKPS+V N GPK GK TDL+RMRQ+L+KLKHN
Sbjct: 258 DKDKKKPSIVVNQGPKPGKPTDLSRMRQILLKLKHN 293


>tr|A7Q3F1|A7Q3F1_VITVI Chromosome chr13 scaffold_48, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00029265001
           PE=4 SV=1
          Length = 185

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 27/39 (69%), Positives = 32/39 (82%), Gaps = 1/39 (2%)
 Frame = -1

Query: 474 RGNKDK-KKPSVVFNHGPKTGKVTDLTRMRQVLVKLKHN 361
           RG KD+ KKPS+V   GPK GK TDL+RMRQ+L+KLKHN
Sbjct: 101 RGKKDQDKKPSIVVIQGPKPGKPTDLSRMRQILLKLKHN 139


>tr|A5B4U6|A5B4U6_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_014565 PE=4 SV=1
          Length = 319

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 27/39 (69%), Positives = 32/39 (82%), Gaps = 1/39 (2%)
 Frame = -1

Query: 474 RGNKDK-KKPSVVFNHGPKTGKVTDLTRMRQVLVKLKHN 361
           RG KD+ KKPS+V   GPK GK TDL+RMRQ+L+KLKHN
Sbjct: 235 RGKKDQDKKPSIVVIQGPKPGKPTDLSRMRQILLKLKHN 273


>tr|Q7XKE9|Q7XKE9_ORYSJ Os04g0679100 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBb0017I01.5 PE=2 SV=1
          Length = 301

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 27/38 (71%), Positives = 30/38 (78%), Gaps = 1/38 (2%)
 Frame = -1

Query: 474 RGNKDK-KKPSVVFNHGPKTGKVTDLTRMRQVLVKLKH 364
           RG KDK KKPS+    GPK GK TDL+RMRQ+LVKLKH
Sbjct: 203 RGKKDKDKKPSITVIQGPKPGKPTDLSRMRQILVKLKH 240


>tr|Q259D4|Q259D4_ORYSA H0801D08.11 protein OS=Oryza sativa
           GN=H0801D08.11 PE=4 SV=1
          Length = 301

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 27/38 (71%), Positives = 30/38 (78%), Gaps = 1/38 (2%)
 Frame = -1

Query: 474 RGNKDK-KKPSVVFNHGPKTGKVTDLTRMRQVLVKLKH 364
           RG KDK KKPS+    GPK GK TDL+RMRQ+LVKLKH
Sbjct: 203 RGKKDKDKKPSITVIQGPKPGKPTDLSRMRQILVKLKH 240


>tr|A2XZ05|A2XZ05_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_17938 PE=4 SV=1
          Length = 301

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 27/38 (71%), Positives = 30/38 (78%), Gaps = 1/38 (2%)
 Frame = -1

Query: 474 RGNKDK-KKPSVVFNHGPKTGKVTDLTRMRQVLVKLKH 364
           RG KDK KKPS+    GPK GK TDL+RMRQ+LVKLKH
Sbjct: 203 RGKKDKDKKPSITVIQGPKPGKPTDLSRMRQILVKLKH 240


>tr|Q8L9R8|Q8L9R8_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 258

 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 28/41 (68%), Positives = 30/41 (73%), Gaps = 3/41 (7%)
 Frame = -1

Query: 474 RGNK---DKKKPSVVFNHGPKTGKVTDLTRMRQVLVKLKHN 361
           RG K   D KKP+V    GPK GK TDLTRMRQ+LVKLKHN
Sbjct: 183 RGKKEQQDPKKPTVSVIQGPKPGKPTDLTRMRQILVKLKHN 223


>tr|O04209|O04209_ARATH Expressed protein (Putative uncharacterized
           protein At2g40060) OS=Arabidopsis thaliana GN=At2g40060
           PE=2 SV=1
          Length = 258

 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 28/41 (68%), Positives = 30/41 (73%), Gaps = 3/41 (7%)
 Frame = -1

Query: 474 RGNK---DKKKPSVVFNHGPKTGKVTDLTRMRQVLVKLKHN 361
           RG K   D KKP+V    GPK GK TDLTRMRQ+LVKLKHN
Sbjct: 183 RGKKEQQDPKKPTVSVIQGPKPGKPTDLTRMRQILVKLKHN 223


>tr|Q0VJA2|Q0VJA2_PLAAC Putative uncharacterized protein (Fragment)
           OS=Platanus acerifolia PE=2 SV=1
          Length = 144

 Score = 52.8 bits (125), Expect = 9e-06
 Identities = 26/39 (66%), Positives = 30/39 (76%), Gaps = 1/39 (2%)
 Frame = -1

Query: 474 RGNKDK-KKPSVVFNHGPKTGKVTDLTRMRQVLVKLKHN 361
           RG KD+ KKPS+    GPK G+ TDL RMRQ+LVKLKHN
Sbjct: 60  RGKKDQDKKPSIAVIQGPKPGEPTDLGRMRQILVKLKHN 98


>tr|B4FJF0|B4FJF0_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 305

 Score = 52.8 bits (125), Expect = 9e-06
 Identities = 26/38 (68%), Positives = 29/38 (76%), Gaps = 1/38 (2%)
 Frame = -1

Query: 474 RGNKDK-KKPSVVFNHGPKTGKVTDLTRMRQVLVKLKH 364
           RG KDK KKPS+    GPK GK TDL+RMR +LVKLKH
Sbjct: 197 RGKKDKDKKPSITVVQGPKPGKPTDLSRMRHILVKLKH 234