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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920379
Clone id YMU001_000136_D09
Library
Length 522
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000136_D09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTTTTTTTTTTTTTGCAAACGAAGTAATACCTTACAAGTAGAACAAGATTATAGCTCTCA
TGGAGACGGCTTTAATTAGAAGGCGCCACATGAGGTCTAATGCTAATTACACAAACATTG
GGTCATGCATCTGCAACCTTCTTTTCATGACCAGATTGATATGATTGAGTGGATCACAAG
TTCGACAGCATCATGGCACAATCTCATTCATAGTCCGATTCACCTCGACTCATGTCGTAC
TCTGCATCACTTCCTCCTGCAGAATAGTCACCTCCTCTAGTTTCCCAATTGCTTCTATTC
CCTTTGCTATTTTTCTCCTCCTCTGGCTTCTTCAAAGAAGCAAACCATGTCGGATACAAC
CGTTTCATGGCAGCAAAGGATGCAGGATGTGCTGCCGTGAGATAGAGAGTGTCATCTCCC
TTCTTCTCCCCAACATCCATGTATCTCATTCCGTTTGTCCATAGCCTTACATGAATGATG
CCCTTCTCTGCAAGAGCCTTTATTTCACTCCGTCCATATGAT
■■Homology search results ■■ -
sp_hit_id P31392
Definition sp|P31392|GP182_RAT G-protein coupled receptor 182 OS=Rattus norvegicus
Align length 54
Score (bit) 31.2
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920379|Adiantum capillus-veneris mRNA, clone:
YMU001_000136_D09.
         (508 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P31392|GP182_RAT G-protein coupled receptor 182 OS=Rattus nor...    31   2.9  
sp|P43142|GP182_MOUSE G-protein coupled receptor 182 OS=Mus musc...    31   3.8  
sp|Q9USL4|NUP61_SCHPO Nucleoporin nup61 OS=Schizosaccharomyces p...    31   3.9  
sp|P12696|ATP6_PARLI ATP synthase subunit a OS=Paracentrotus liv...    31   3.9  
sp|Q6P4Y6|IRS1_XENTR Insulin receptor substrate 1 OS=Xenopus tro...    30   5.0  
sp|Q8R526|PK1L1_MOUSE Polycystic kidney disease protein 1-like 1...    30   6.5  
sp|Q9EVI7|LEU3_BUCUN 3-isopropylmalate dehydrogenase OS=Buchnera...    30   6.6  
sp|P36598|THI1_SCHPO Thiamine repressible genes regulatory prote...    30   8.4  

>sp|P31392|GP182_RAT G-protein coupled receptor 182 OS=Rattus
           norvegicus GN=Gpr182 PE=2 SV=3
          Length = 395

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +3

Query: 216 SCRTLHHFLLQNSHLL*FPNCFYSLCYFSPPLASSKKQTMSDTTVSWQQRMQDV 377
           SCR +H+F L N          YS  +F   L+  +  T+++T+ SWQ+    +
Sbjct: 121 SCRFIHYFYLAN---------MYSSIFFLTCLSIDRYVTLTNTSPSWQRHQHRI 165


>sp|P43142|GP182_MOUSE G-protein coupled receptor 182 OS=Mus
           musculus GN=Gpr182 PE=2 SV=1
          Length = 395

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +3

Query: 216 SCRTLHHFLLQNSHLL*FPNCFYSLCYFSPPLASSKKQTMSDTTVSWQQRMQDV 377
           SCR +H+F L N          YS  +F   L+  +  T+++T+ SWQ+    +
Sbjct: 121 SCRFIHYFYLVN---------MYSSIFFLTCLSIDRYVTLTNTSPSWQRHQHRI 165


>sp|Q9USL4|NUP61_SCHPO Nucleoporin nup61 OS=Schizosaccharomyces
           pombe GN=nup61 PE=1 SV=1
          Length = 565

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
 Frame = -2

Query: 384 TAAHPASFAAMKRLYPTWF--ASLKKPEEEKNSKGNRSNWETR--GGDYSAGGSDAEYDM 217
           T  +P SFAA K  +PT    AS+   + E+ S GN+S  E +  G D +          
Sbjct: 386 TTTNPFSFAAPKSSFPTSSTPASVGAEKSEETSNGNKSEQEEKENGNDETRSNDSLVSGK 445

Query: 216 SRGESD 199
            +GE +
Sbjct: 446 GKGEEN 451


>sp|P12696|ATP6_PARLI ATP synthase subunit a OS=Paracentrotus
           lividus GN=ATP6 PE=3 SV=1
          Length = 232

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
 Frame = +1

Query: 208 TSTHVVLCITSSCRIVTSSSFPIASIP-FAIFLLLWLLQRSKPC 336
           T+ H+++ + S+   + SSS  ++SIP F IF+LL++L+    C
Sbjct: 171 TAGHLLIFLLSTAIWLLSSSLMVSSIPIFVIFVLLFILEIGVAC 214


>sp|Q6P4Y6|IRS1_XENTR Insulin receptor substrate 1 OS=Xenopus
           tropicalis GN=irs1 PE=2 SV=1
          Length = 654

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -2

Query: 324 SLKKPEEEKNSKGNRSNWETRGGDYSAGGSDAEYDMSRG 208
           S++ PEEE+  KG R        DY +  SD EY  S G
Sbjct: 289 SVQSPEEEEEEKGARVETNESSADYGSASSD-EYGSSPG 326


>sp|Q8R526|PK1L1_MOUSE Polycystic kidney disease protein 1-like 1
           (Fragment) OS=Mus musculus GN=Pkd1l1 PE=2 SV=1
          Length = 531

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = +3

Query: 123 PSFHDQIDMIEWITSS---TASWHNLIHSPIHLDSCRTLHHFLLQNSH 257
           PS H   D++ W   +    AS   ++ SP  +++C   HH L + SH
Sbjct: 331 PSPHPTSDLLPWTDQAWRIAASSSAVVCSPFPMEACSHKHHDLREKSH 378


>sp|Q9EVI7|LEU3_BUCUN 3-isopropylmalate dehydrogenase OS=Buchnera
           aphidicola subsp. Uroleucon sonchi GN=leuB PE=3 SV=1
          Length = 364

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 8/44 (18%)
 Frame = +1

Query: 382 REIESVISLLLPNIHVSH--------SVCP*PYMNDALLCKSLY 489
           REI   +SL  PN+H+SH         +   P   D LLC +L+
Sbjct: 207 REIVKKVSLSYPNVHLSHLYIDNATMQIIKDPNQFDVLLCSNLF 250


>sp|P36598|THI1_SCHPO Thiamine repressible genes regulatory protein
           thi1 OS=Schizosaccharomyces pombe GN=thi1 PE=1 SV=2
          Length = 775

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = +3

Query: 123 PSFHDQIDMIEWITSSTASWHNLIHSPIHLDSCRTLHHFLLQNSHL 260
           PSF  Q++ +  I +    W + +HS +  D     H     N+H+
Sbjct: 470 PSFESQVNSVRRIYARLELWKSDLHSSVVFDESAVQHPLFRSNAHV 515
tr_hit_id Q4T6E0
Definition tr|Q4T6E0|Q4T6E0_TETNG Chromosome 10 SCAF8804, whole genome shotgun sequence OS=Tetraodon nigroviridis
Align length 126
Score (bit) 33.9
E-value 4.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920379|Adiantum capillus-veneris mRNA, clone:
YMU001_000136_D09.
         (508 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4T6E0|Q4T6E0_TETNG Chromosome 10 SCAF8804, whole genome shot...    34   4.6  
tr|Q60E38|Q60E38_ORYSJ Os05g0199500 protein OS=Oryza sativa subs...    34   4.7  
tr|A3B0W6|A3B0W6_ORYSJ Putative uncharacterized protein OS=Oryza...    34   4.7  
tr|A2Y1B7|A2Y1B7_ORYSI Putative uncharacterized protein OS=Oryza...    34   4.7  
tr|Q8W497|Q8W497_ARATH Putative uncharacterized protein At2g1987...    33   6.1  
tr|O82194|O82194_ARATH Putative uncharacterized protein At2g1987...    33   6.1  
tr|B8L5I4|B8L5I4_9GAMM Flp pilus assembly protein TadB OS=Stenot...    33   8.0  

>tr|Q4T6E0|Q4T6E0_TETNG Chromosome 10 SCAF8804, whole genome shotgun
           sequence OS=Tetraodon nigroviridis GN=GSTENG00006360001
           PE=4 SV=1
          Length = 833

 Score = 33.9 bits (76), Expect = 4.6
 Identities = 31/126 (24%), Positives = 59/126 (46%), Gaps = 2/126 (1%)
 Frame = +3

Query: 108 VMHLQPSFHDQIDMIEWITSSTASWHNLIHSPIHLDS-CRTLHHFLLQNSHLL*FPNCFY 284
           ++  Q  +HD ++++E   +      NL+++ + L+S CR     LL   H+L     FY
Sbjct: 520 LLSAQKHYHDALNIMEMALAEYPENFNLLYTKVKLESMCRGPEEALLTCKHMLQIWKSFY 579

Query: 285 SLCYFSPPLASSKKQTMSDTTVSWQQRMQDV-LP*DRECHLPSSPQHPCISFRLSIALHE 461
           +L   S P  S +  ++ D  ++ ++++  + LP   +    S       + R+  AL E
Sbjct: 580 NL---SNPSDSGRGSSLLDRAIADRRQLNAMTLPDFSDPETGSVHATSIAASRVEQALSE 636

Query: 462 *CPSLQ 479
              SLQ
Sbjct: 637 VASSLQ 642


>tr|Q60E38|Q60E38_ORYSJ Os05g0199500 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0007C23.15 PE=2 SV=1
          Length = 390

 Score = 33.9 bits (76), Expect = 4.7
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
 Frame = -2

Query: 408 KGDDTLYLTAAHPASFAAMKRLYP-TWFASLKKPE--EEKNSKGNRSNWETRGGDYSAGG 238
           K DD +YL     A+  A  RL+  T+   +KK     + N K   S+WE  G +Y +  
Sbjct: 231 KADDAIYLRPDRLAALLAKDRLHQRTYIGCMKKGPVVNDPNMKWYESSWELLGNEYFSHA 290

Query: 237 SDAEYDMS 214
           S   Y +S
Sbjct: 291 SGLLYALS 298


>tr|A3B0W6|A3B0W6_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_016688 PE=4 SV=1
          Length = 374

 Score = 33.9 bits (76), Expect = 4.7
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
 Frame = -2

Query: 408 KGDDTLYLTAAHPASFAAMKRLYP-TWFASLKKPE--EEKNSKGNRSNWETRGGDYSAGG 238
           K DD +YL     A+  A  RL+  T+   +KK     + N K   S+WE  G +Y +  
Sbjct: 228 KADDAIYLRPDRLAALLAKDRLHQRTYIGCMKKGPVVNDPNMKWYESSWELLGNEYFSHA 287

Query: 237 SDAEYDMS 214
           S   Y +S
Sbjct: 288 SGLLYALS 295


>tr|A2Y1B7|A2Y1B7_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_18800 PE=4 SV=1
          Length = 193

 Score = 33.9 bits (76), Expect = 4.7
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
 Frame = -2

Query: 408 KGDDTLYLTAAHPASFAAMKRLYP-TWFASLKKPE--EEKNSKGNRSNWETRGGDYSAGG 238
           K DD +YL     A+  A  RL+  T+   +KK     + N K   S+WE  G +Y +  
Sbjct: 47  KADDAIYLRPDRLAALLAKDRLHQRTYIGCMKKGPVVNDPNMKWYESSWELLGNEYFSHA 106

Query: 237 SDAEYDMS 214
           S   Y +S
Sbjct: 107 SGLLYALS 114


>tr|Q8W497|Q8W497_ARATH Putative uncharacterized protein At2g19870;
           F6F22.10 (Putative uncharacterized protein)
           OS=Arabidopsis thaliana GN=At2g19870/F6F22.10 PE=2 SV=1
          Length = 589

 Score = 33.5 bits (75), Expect = 6.1
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -2

Query: 333 WFASLKKPEEEKNSKGNRSNWETRGGDYSAGGSDAEYDMSRGES 202
           W  S +KP EE+  +G+R +WE R G   +G          GE+
Sbjct: 123 WVKSDEKPVEERFQRGDRPSWEKRDGRNDSGSDRRSRSRGYGET 166


>tr|O82194|O82194_ARATH Putative uncharacterized protein At2g19870
           OS=Arabidopsis thaliana GN=At2g19870 PE=3 SV=1
          Length = 577

 Score = 33.5 bits (75), Expect = 6.1
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -2

Query: 333 WFASLKKPEEEKNSKGNRSNWETRGGDYSAGGSDAEYDMSRGES 202
           W  S +KP EE+  +G+R +WE R G   +G          GE+
Sbjct: 111 WVKSDEKPVEERFQRGDRPSWEKRDGRNDSGSDRRSRSRGYGET 154


>tr|B8L5I4|B8L5I4_9GAMM Flp pilus assembly protein TadB
           OS=Stenotrophomonas sp. SKA14 GN=SSKA14_4127 PE=4 SV=1
          Length = 318

 Score = 33.1 bits (74), Expect = 8.0
 Identities = 15/45 (33%), Positives = 27/45 (60%)
 Frame = +1

Query: 220 VVLCITSSCRIVTSSSFPIASIPFAIFLLLWLLQRSKPCRIQPFH 354
           VVL +T+  R+ T+  FP+  + +A+   LW+++R+   R Q  H
Sbjct: 102 VVLSLTAMLRLGTAWMFPLTLLLYALGCWLWIMRRTTRLRAQLLH 146