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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920386
Clone id YMU001_000136_E04
Library
Length 495
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000136_E04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ATTGTACCTGCCTTTACTTCAGAGCAGAACAGATTGCGAGAAGAGCAGGTTGAATATAGC
AGAAGAAACTGATGTCGGGTGCAGAGAAAGAGTGAGAAAGTGGGAGAGATGACGCATACT
GAACTTGCAAAGCTGCCCGCTCGGAGGGCCACCATTGGTCACTGCCACACTTTGGCTCAG
GATTCTAGAAAGAAAAACCAGTCAACTCGCATGTCTTTACCTTCAATCAGCCCTGCTCAA
ACCAATAAGTAACCCGTTATGGGGCTCCTTATTCATAAAACCAGGCAGCCCCAGTCACCA
TACATCTCTCTCAAACAACTAGTTGCCCCGTTCCATGTTGCTCCTCGTGAGCATAAGGTG
CCAATAGCACAAAATGAGCATGAAAAAAAATCTGGGTTCTATCTCCCAGTAGGAGCTCCA
AATACTAACATCTTCAAACACCCACTCGGTCCACTCTTTGTTTAATCCCTACATCTCGCC
CGGCTCTCTAGCCCG
■■Homology search results ■■ -
sp_hit_id Q05952
Definition sp|Q05952|STP2_HUMAN Nuclear transition protein 2 OS=Homo sapiens
Align length 69
Score (bit) 30.8
E-value 3.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920386|Adiantum capillus-veneris mRNA, clone:
YMU001_000136_E04.
         (495 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q05952|STP2_HUMAN Nuclear transition protein 2 OS=Homo sapien...    31   3.6  
sp|Q9N1A5|STP2_GORGO Nuclear transition protein 2 (Fragment) OS=...    30   4.7  
sp|P32687|YJBF_ECOLI Uncharacterized lipoprotein yjbF OS=Escheri...    30   6.0  
sp|Q9NVG8|TBC13_HUMAN TBC1 domain family member 13 OS=Homo sapie...    30   6.1  

>sp|Q05952|STP2_HUMAN Nuclear transition protein 2 OS=Homo sapiens
           GN=TNP2 PE=2 SV=1
          Length = 138

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = +1

Query: 109 MTHTELAK--LPARRATIGHCHTLAQDSRKKNQSTRMSLPSISPAQTNK*PVMGLLIHKT 282
           +THT+L     P  R    HC T +Q  R+ ++ +R    S SPA +++ P  G      
Sbjct: 10  ITHTQLHSNSQPQSRTCTRHCQTFSQSCRQSHRGSRSQSSSQSPA-SHRNPT-GAHSSSG 67

Query: 283 RQPQSPYIS 309
            Q QSP  S
Sbjct: 68  HQSQSPNTS 76


>sp|Q9N1A5|STP2_GORGO Nuclear transition protein 2 (Fragment)
           OS=Gorilla gorilla gorilla GN=TNP2 PE=2 SV=1
          Length = 133

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = +1

Query: 109 MTHTELAK--LPARRATIGHCHTLAQDSRKKNQSTRMSLPSISPAQTNK*PVMGLLIHKT 282
           +THT+L     P  R    HC T +Q  R+ ++ +R    S SPA +++ P  G      
Sbjct: 10  ITHTQLHSNSQPQSRTCTRHCQTFSQSCRQSHRGSRSRSSSQSPA-SHRNPT-GAHSSSG 67

Query: 283 RQPQSPYIS 309
            Q QSP  S
Sbjct: 68  HQSQSPNTS 76


>sp|P32687|YJBF_ECOLI Uncharacterized lipoprotein yjbF
           OS=Escherichia coli (strain K12) GN=yjbF PE=4 SV=2
          Length = 212

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +2

Query: 185 LERKTSQLACLYLQ--SALLKPISNPLWGSLFIKPG 286
           ++R    L CL LQ  SA  K + N LW SLF  PG
Sbjct: 1   MKRPALILICLLLQACSATTKELGNSLWDSLFGTPG 36


>sp|Q9NVG8|TBC13_HUMAN TBC1 domain family member 13 OS=Homo sapiens
           GN=TBC1D13 PE=1 SV=2
          Length = 275

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -1

Query: 447 EWVFEDV-SIWSSYWEIEPRFFFMLILCYWHLMLTRSNMERGN 322
           E++  DV  IW S +  + RF F+L++C   LML R  +  G+
Sbjct: 203 EFLLPDVIRIWDSLFADDNRFDFLLLVCCAMLMLIREQLLEGD 245
tr_hit_id Q8X5Y0
Definition tr|Q8X5Y0|Q8X5Y0_ECO57 Putative uncharacterized protein yjbF (Putative uncharacterized protein ECs5010) OS=Escherichia coli O157:H7
Align length 46
Score (bit) 38.9
E-value 0.13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920386|Adiantum capillus-veneris mRNA, clone:
YMU001_000136_E04.
         (495 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q8X5Y0|Q8X5Y0_ECO57 Putative uncharacterized protein yjbF (Pu...    39   0.13 
tr|Q8CVI8|Q8CVI8_ECOL6 Hypothetical lipoprotein yjbF OS=Escheric...    39   0.13 
tr|Q83IP1|Q83IP1_SHIFL Putative uncharacterized protein yjbF OS=...    39   0.13 
tr|Q3YUV8|Q3YUV8_SHISS Putative uncharacterized protein yjbF OS=...    39   0.13 
tr|Q328Y2|Q328Y2_SHIDS Putative uncharacterized protein yjbF OS=...    39   0.13 
tr|Q31TW9|Q31TW9_SHIBS Putative uncharacterized protein yjbF OS=...    39   0.13 
tr|Q1R3R1|Q1R3R1_ECOUT Putative uncharacterized protein OS=Esche...    39   0.13 
tr|B6I5N9|B6I5N9_ECOSE Putative uncharacterized protein OS=Esche...    39   0.13 
tr|A8A7C6|A8A7C6_ECOHS Putative uncharacterized protein OS=Esche...    39   0.13 
tr|A7ZUP5|A7ZUP5_ECO24 Putative uncharacterized protein OS=Esche...    39   0.13 
tr|A1AIK5|A1AIK5_ECOK1 Putative uncharacterized protein yjbF OS=...    39   0.13 
tr|B2N305|B2N305_ECOLX Putative uncharacterized protein OS=Esche...    39   0.13 
tr|Q2U481|Q2U481_ASPOR Predicted protein OS=Aspergillus oryzae G...    37   0.68 
tr|Q38DK9|Q38DK9_9TRYP Structural maintenance of chromosome 1, p...    35   1.5  
tr|A8XHG1|A8XHG1_CAEBR CBR-SUCH-1 protein OS=Caenorhabditis brig...    35   2.5  
tr|B8NTN5|B8NTN5_ASPFL Putative uncharacterized protein OS=Asper...    34   3.4  
tr|Q8ZKI3|Q8ZKI3_SALTY Putative outer membrane lipoprotein OS=Sa...    34   4.3  
tr|Q57H04|Q57H04_SALCH Putative outer membrane lipoprotein OS=Sa...    34   4.3  
tr|B5R7S2|B5R7S2_SALG2 Putative lipoprotein OS=Salmonella gallin...    34   4.3  
tr|B5QYI6|B5QYI6_SALEP Putative lipoprotein OS=Salmonella enteri...    34   4.3  
tr|A9MHA5|A9MHA5_SALAR Putative uncharacterized protein OS=Salmo...    33   7.3  
tr|A4HHA1|A4HHA1_LEIBR Putative uncharacterized protein OS=Leish...    33   7.3  
tr|Q4STT2|Q4STT2_TETNG Chromosome 4 SCAF14117, whole genome shot...    33   9.8  
tr|A5GQA0|A5GQA0_SYNR3 Glycosyltransferase of family GT4 OS=Syne...    33   9.8  
tr|A3Y727|A3Y727_9GAMM Leucyl-tRNA synthetase OS=Marinomonas sp....    33   9.8  
tr|Q9VZQ3|Q9VZQ3_DROME Karst, isoform A OS=Drosophila melanogast...    33   9.8  
tr|Q7KV70|Q7KV70_DROME Karst, isoform C OS=Drosophila melanogast...    33   9.8  
tr|Q7KV69|Q7KV69_DROME Karst, isoform B OS=Drosophila melanogast...    33   9.8  
tr|Q23980|Q23980_DROME Beta-heavy-spectrin (Fragment) OS=Drosoph...    33   9.8  
tr|A8JNJ6|A8JNJ6_DROME Karst, isoform E OS=Drosophila melanogast...    33   9.8  

>tr|Q8X5Y0|Q8X5Y0_ECO57 Putative uncharacterized protein yjbF
           (Putative uncharacterized protein ECs5010)
           OS=Escherichia coli O157:H7 GN=yjbF PE=4 SV=1
          Length = 222

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +2

Query: 155 LVTATLWLRILERKTSQLACLYLQ--SALLKPISNPLWGSLFIKPG 286
           +V   LW R+++R    L CL LQ  SA  K + N LW SLF  PG
Sbjct: 1   MVILPLWRRVVKRPAFILICLLLQACSATTKELGNSLWDSLFGTPG 46


>tr|Q8CVI8|Q8CVI8_ECOL6 Hypothetical lipoprotein yjbF OS=Escherichia
           coli O6 GN=yjbF PE=4 SV=1
          Length = 222

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +2

Query: 155 LVTATLWLRILERKTSQLACLYLQ--SALLKPISNPLWGSLFIKPG 286
           +V   LW R+++R    L CL LQ  SA  K + N LW SLF  PG
Sbjct: 1   MVILPLWRRVVKRPALILICLLLQACSATTKELGNSLWDSLFGTPG 46


>tr|Q83IP1|Q83IP1_SHIFL Putative uncharacterized protein yjbF
           OS=Shigella flexneri GN=yjbF PE=4 SV=1
          Length = 222

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +2

Query: 155 LVTATLWLRILERKTSQLACLYLQ--SALLKPISNPLWGSLFIKPG 286
           +V   LW R+++R    L CL LQ  SA  K + N LW SLF  PG
Sbjct: 1   MVILPLWRRVVKRPALILICLLLQACSATTKELGNSLWDSLFGTPG 46


>tr|Q3YUV8|Q3YUV8_SHISS Putative uncharacterized protein yjbF
           OS=Shigella sonnei (strain Ss046) GN=yjbF PE=4 SV=1
          Length = 222

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +2

Query: 155 LVTATLWLRILERKTSQLACLYLQ--SALLKPISNPLWGSLFIKPG 286
           +V   LW R+++R    L CL LQ  SA  K + N LW SLF  PG
Sbjct: 1   MVILPLWRRVVKRPALILICLLLQACSATTKELGNSLWDSLFGTPG 46


>tr|Q328Y2|Q328Y2_SHIDS Putative uncharacterized protein yjbF
           OS=Shigella dysenteriae serotype 1 (strain Sd197)
           GN=yjbF PE=4 SV=1
          Length = 222

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +2

Query: 155 LVTATLWLRILERKTSQLACLYLQ--SALLKPISNPLWGSLFIKPG 286
           +V   LW R+++R    L CL LQ  SA  K + N LW SLF  PG
Sbjct: 1   MVILPLWRRVVKRPALILICLLLQACSATTKELGNSLWDSLFGTPG 46


>tr|Q31TW9|Q31TW9_SHIBS Putative uncharacterized protein yjbF
           OS=Shigella boydii serotype 4 (strain Sb227) GN=yjbF
           PE=4 SV=1
          Length = 222

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +2

Query: 155 LVTATLWLRILERKTSQLACLYLQ--SALLKPISNPLWGSLFIKPG 286
           +V   LW R+++R    L CL LQ  SA  K + N LW SLF  PG
Sbjct: 1   MVILPLWRRVVKRPALILICLLLQACSATTKELGNSLWDSLFGTPG 46


>tr|Q1R3R1|Q1R3R1_ECOUT Putative uncharacterized protein
           OS=Escherichia coli (strain UTI89 / UPEC) GN=UTI89_C4595
           PE=4 SV=1
          Length = 222

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +2

Query: 155 LVTATLWLRILERKTSQLACLYLQ--SALLKPISNPLWGSLFIKPG 286
           +V   LW R+++R    L CL LQ  SA  K + N LW SLF  PG
Sbjct: 1   MVILPLWRRVVKRPALILICLLLQACSATTKELGNSLWDSLFGTPG 46


>tr|B6I5N9|B6I5N9_ECOSE Putative uncharacterized protein
           OS=Escherichia coli (strain SE11) GN=ECSE_4316 PE=4 SV=1
          Length = 222

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +2

Query: 155 LVTATLWLRILERKTSQLACLYLQ--SALLKPISNPLWGSLFIKPG 286
           +V   LW R+++R    L CL LQ  SA  K + N LW SLF  PG
Sbjct: 1   MVILPLWRRVVKRPALILICLLLQACSATTKELGNSLWDSLFGTPG 46


>tr|A8A7C6|A8A7C6_ECOHS Putative uncharacterized protein
           OS=Escherichia coli O9:H4 (strain HS) GN=EcHS_A4266 PE=4
           SV=1
          Length = 222

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +2

Query: 155 LVTATLWLRILERKTSQLACLYLQ--SALLKPISNPLWGSLFIKPG 286
           +V   LW R+++R    L CL LQ  SA  K + N LW SLF  PG
Sbjct: 1   MVILPLWRRVVKRPALILICLLLQACSATTKELGNSLWDSLFGTPG 46


>tr|A7ZUP5|A7ZUP5_ECO24 Putative uncharacterized protein
           OS=Escherichia coli O139:H28 (strain E24377A / ETEC)
           GN=EcE24377A_4575 PE=4 SV=1
          Length = 222

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +2

Query: 155 LVTATLWLRILERKTSQLACLYLQ--SALLKPISNPLWGSLFIKPG 286
           +V   LW R+++R    L CL LQ  SA  K + N LW SLF  PG
Sbjct: 1   MVILPLWRRVVKRPALILICLLLQACSATTKELGNSLWDSLFGTPG 46