NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920389
Clone id YMU001_000136_E07
Library
Length 436
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000136_E07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GCAGGTACTCTGAGATTCTGGATGCCAAGGTGTCAACCTAATTCTGTCCAATAATGAGGG
CGAGATGGAGGGCCAGGATCCTCTACCCCCTGACCTTGACAGTGGGAGTATGAATGCGAA
TTCCAGAGAGGCAATTCTGTAACTCGCATAGGTTTCAAGAAATTACGATTAAGCACTATT
TGATGCAAATGCACAATTCGAATACAATGAGGATAGGGCACTATAGAAGTTAGGGCTTTC
AGCACGCTTTGGGCCTACTTAAATTCAAAGTCCTCTAAAGAGACAATACGAATTCGATGA
GGATAGGGCACTATAGAAGTTGGAAGCTTTCAGCACGCTATGGACCTACTAAAATCATCA
AAGTCCTCTAAAGAGAAACATAAGCAATAACACCTCGCACATTTAAAATCACTGAAACTA
AACTGAAGAACCTTGT
■■Homology search results ■■ -
sp_hit_id P0A584
Definition sp|P0A584|G6PD_MYCTU Glucose-6-phosphate 1-dehydrogenase OS=Mycobacterium tuberculosis
Align length 75
Score (bit) 32.7
E-value 0.66
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920389|Adiantum capillus-veneris mRNA, clone:
YMU001_000136_E07.
         (436 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P0A584|G6PD_MYCTU Glucose-6-phosphate 1-dehydrogenase OS=Myco...    33   0.66 
sp|P0A585|G6PD_MYCBO Glucose-6-phosphate 1-dehydrogenase OS=Myco...    33   0.66 
sp|Q6DE55|HMHA1_XENLA Minor histocompatibility protein HA-1 OS=X...    29   7.3  

>sp|P0A584|G6PD_MYCTU Glucose-6-phosphate 1-dehydrogenase
           OS=Mycobacterium tuberculosis GN=zwf PE=3 SV=1
          Length = 514

 Score = 32.7 bits (73), Expect = 0.66
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
 Frame = -3

Query: 254 AQSVLKALTSIVPYPHCIRIVHLHQIVLNRNFLKPMRVTEL--PLWNSHSYSHCQGQGVE 81
           A+ + KA+ ++ P     RI H       +N L      +L  P+WN+H   H Q    E
Sbjct: 185 ARELNKAVNAVFPEEAVFRIDHYLGKETVQNILALRFANQLFDPIWNAHYVDHVQITMAE 244

Query: 80  DPGPPSRPHYWTELG 36
           D G   R  Y+  +G
Sbjct: 245 DIGLGGRAGYYDGIG 259


>sp|P0A585|G6PD_MYCBO Glucose-6-phosphate 1-dehydrogenase
           OS=Mycobacterium bovis GN=zwf PE=3 SV=1
          Length = 514

 Score = 32.7 bits (73), Expect = 0.66
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
 Frame = -3

Query: 254 AQSVLKALTSIVPYPHCIRIVHLHQIVLNRNFLKPMRVTEL--PLWNSHSYSHCQGQGVE 81
           A+ + KA+ ++ P     RI H       +N L      +L  P+WN+H   H Q    E
Sbjct: 185 ARELNKAVNAVFPEEAVFRIDHYLGKETVQNILALRFANQLFDPIWNAHYVDHVQITMAE 244

Query: 80  DPGPPSRPHYWTELG 36
           D G   R  Y+  +G
Sbjct: 245 DIGLGGRAGYYDGIG 259


>sp|Q6DE55|HMHA1_XENLA Minor histocompatibility protein HA-1
            OS=Xenopus laevis GN=hmha1 PE=2 SV=1
          Length = 1107

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -3

Query: 236  ALTSIVPYPHCIRIVHLHQIVLNRNFLKPMRVTELPLWNSHS 111
            +L+S+V YPH  RIV    I  +  F +P+  T++   NS S
Sbjct: 917  SLSSLVDYPHQARIVETLIIFYSTIFQEPVSNTDIGTGNSSS 958
tr_hit_id Q741B6
Definition tr|Q741B6|Q741B6_MYCPA Glucose-6-phosphate 1-dehydrogenase OS=Mycobacterium paratuberculosis
Align length 75
Score (bit) 38.9
E-value 0.13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920389|Adiantum capillus-veneris mRNA, clone:
YMU001_000136_E07.
         (436 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q741B6|Q741B6_MYCPA Glucose-6-phosphate 1-dehydrogenase OS=My...    39   0.13 
tr|A0QHX3|A0QHX3_MYCA1 Glucose-6-phosphate 1-dehydrogenase OS=My...    39   0.13 
tr|A4TC31|A4TC31_MYCGI Glucose-6-phosphate 1-dehydrogenase OS=My...    33   7.1  
tr|B6TD97|B6TD97_MAIZE Putative uncharacterized protein OS=Zea m...    33   7.1  
tr|Q4S2F4|Q4S2F4_TETNG Chromosome 17 SCAF14762, whole genome sho...    33   9.2  
tr|A5U2F0|A5U2F0_MYCTA Glucose-6-phosphate 1-dehydrogenase OS=My...    33   9.3  
tr|A1KIN6|A1KIN6_MYCBP Glucose-6-phosphate 1-dehydrogenase OS=My...    33   9.3  
tr|A4KGZ9|A4KGZ9_MYCTU Glucose-6-phosphate 1-dehydrogenase OS=My...    33   9.3  
tr|A2VHX3|A2VHX3_MYCTU Glucose-6-phosphate 1-dehydrogenase OS=My...    33   9.3  
tr|A1QRG7|A1QRG7_MYCTF Glucose-6-phosphate 1-dehydrogenase OS=My...    33   9.3  

>tr|Q741B6|Q741B6_MYCPA Glucose-6-phosphate 1-dehydrogenase
           OS=Mycobacterium paratuberculosis GN=zwf2 PE=3 SV=1
          Length = 514

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = -3

Query: 254 AQSVLKALTSIVPYPHCIRIVHLHQIVLNRNFLKPMRVTEL--PLWNSHSYSHCQGQGVE 81
           AQS+ KA+ ++ P     RI H       RN L      +L  P+WNSH   H Q    E
Sbjct: 185 AQSLNKAVNAVFPEESVFRIDHYLGKETVRNILALRFANQLFDPIWNSHYVDHVQITMAE 244

Query: 80  DPGPPSRPHYWTELG 36
           D G   R  Y+  +G
Sbjct: 245 DIGLGGRAGYYDGIG 259


>tr|A0QHX3|A0QHX3_MYCA1 Glucose-6-phosphate 1-dehydrogenase
           OS=Mycobacterium avium (strain 104) GN=zwf PE=3 SV=1
          Length = 488

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = -3

Query: 254 AQSVLKALTSIVPYPHCIRIVHLHQIVLNRNFLKPMRVTEL--PLWNSHSYSHCQGQGVE 81
           AQS+ KA+ ++ P     RI H       RN L      +L  P+WNSH   H Q    E
Sbjct: 155 AQSLNKAVNAVFPEESVFRIDHYLGKETVRNILALRFANQLFDPIWNSHYVDHVQITMAE 214

Query: 80  DPGPPSRPHYWTELG 36
           D G   R  Y+  +G
Sbjct: 215 DIGLGGRAGYYDGIG 229


>tr|A4TC31|A4TC31_MYCGI Glucose-6-phosphate 1-dehydrogenase
           OS=Mycobacterium gilvum (strain PYR-GCK) GN=Mflv_3694
           PE=3 SV=1
          Length = 513

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
 Frame = -3

Query: 254 AQSVLKALTSIVPYPHCIRIVHLHQIVLNRNFLKPMRVTEL--PLWNSHSYSHCQGQGVE 81
           A+ +   + S+ P     RI H       +N L      EL  P+WNSH   H Q    E
Sbjct: 180 ARELNNVVNSVFPEESVFRIDHYLGKETVQNILALRFANELYEPIWNSHYVDHVQITMAE 239

Query: 80  DPGPPSRPHYWTELG 36
           D G   R  Y+  +G
Sbjct: 240 DIGLGGRAGYYDGIG 254


>tr|B6TD97|B6TD97_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 387

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 21/44 (47%), Positives = 24/44 (54%)
 Frame = -3

Query: 194 VHLHQIVLNRNFLKPMRVTELPLWNSHSYSHCQGQGVEDPGPPS 63
           +HLH + LNR  L P     LPL +S S S   G G ED  PPS
Sbjct: 41  LHLHSLRLNRPHLPP-----LPLASSGSGSDIIGSGGEDDLPPS 79


>tr|Q4S2F4|Q4S2F4_TETNG Chromosome 17 SCAF14762, whole genome
           shotgun sequence. (Fragment) OS=Tetraodon nigroviridis
           GN=GSTENG00025108001 PE=4 SV=1
          Length = 815

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -2

Query: 105 PLSRSGGRGSWPSISPSLLDRIRLTPW-HPES 13
           P SRSG  GSWP+  PS L  + L  W HP S
Sbjct: 663 PHSRSGWSGSWPANVPSRLITLTLVVWLHPTS 694


>tr|A5U2F0|A5U2F0_MYCTA Glucose-6-phosphate 1-dehydrogenase
           OS=Mycobacterium tuberculosis (strain ATCC 25177 /
           H37Ra) GN=zwf2 PE=3 SV=1
          Length = 514

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
 Frame = -3

Query: 254 AQSVLKALTSIVPYPHCIRIVHLHQIVLNRNFLKPMRVTEL--PLWNSHSYSHCQGQGVE 81
           A+ + KA+ ++ P     RI H       +N L      +L  P+WN+H   H Q    E
Sbjct: 185 ARELNKAVNAVFPEEAVFRIDHYLGKETVQNILALRFANQLFDPIWNAHYVDHVQITMAE 244

Query: 80  DPGPPSRPHYWTELG 36
           D G   R  Y+  +G
Sbjct: 245 DIGLGGRAGYYDGIG 259


>tr|A1KIN6|A1KIN6_MYCBP Glucose-6-phosphate 1-dehydrogenase
           OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2)
           GN=zwf2 PE=3 SV=1
          Length = 514

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
 Frame = -3

Query: 254 AQSVLKALTSIVPYPHCIRIVHLHQIVLNRNFLKPMRVTEL--PLWNSHSYSHCQGQGVE 81
           A+ + KA+ ++ P     RI H       +N L      +L  P+WN+H   H Q    E
Sbjct: 185 ARELNKAVNAVFPEEAVFRIDHYLGKETVQNILALRFANQLFDPIWNAHYVDHVQITMAE 244

Query: 80  DPGPPSRPHYWTELG 36
           D G   R  Y+  +G
Sbjct: 245 DIGLGGRAGYYDGIG 259


>tr|A4KGZ9|A4KGZ9_MYCTU Glucose-6-phosphate 1-dehydrogenase
           OS=Mycobacterium tuberculosis str. Haarlem GN=TBHG_01425
           PE=3 SV=1
          Length = 514

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
 Frame = -3

Query: 254 AQSVLKALTSIVPYPHCIRIVHLHQIVLNRNFLKPMRVTEL--PLWNSHSYSHCQGQGVE 81
           A+ + KA+ ++ P     RI H       +N L      +L  P+WN+H   H Q    E
Sbjct: 185 ARELNKAVNAVFPEEAVFRIDHYLGKETVQNILALRFANQLFDPIWNAHYVDHVQITMAE 244

Query: 80  DPGPPSRPHYWTELG 36
           D G   R  Y+  +G
Sbjct: 245 DIGLGGRAGYYDGIG 259


>tr|A2VHX3|A2VHX3_MYCTU Glucose-6-phosphate 1-dehydrogenase
           OS=Mycobacterium tuberculosis C GN=TBCG_01423 PE=3 SV=1
          Length = 514

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
 Frame = -3

Query: 254 AQSVLKALTSIVPYPHCIRIVHLHQIVLNRNFLKPMRVTEL--PLWNSHSYSHCQGQGVE 81
           A+ + KA+ ++ P     RI H       +N L      +L  P+WN+H   H Q    E
Sbjct: 185 ARELNKAVNAVFPEEAVFRIDHYLGKETVQNILALRFANQLFDPIWNAHYVDHVQITMAE 244

Query: 80  DPGPPSRPHYWTELG 36
           D G   R  Y+  +G
Sbjct: 245 DIGLGGRAGYYDGIG 259


>tr|A1QRG7|A1QRG7_MYCTF Glucose-6-phosphate 1-dehydrogenase
           OS=Mycobacterium tuberculosis (strain F11) GN=TBFG_01452
           PE=3 SV=1
          Length = 514

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
 Frame = -3

Query: 254 AQSVLKALTSIVPYPHCIRIVHLHQIVLNRNFLKPMRVTEL--PLWNSHSYSHCQGQGVE 81
           A+ + KA+ ++ P     RI H       +N L      +L  P+WN+H   H Q    E
Sbjct: 185 ARELNKAVNAVFPEEAVFRIDHYLGKETVQNILALRFANQLFDPIWNAHYVDHVQITMAE 244

Query: 80  DPGPPSRPHYWTELG 36
           D G   R  Y+  +G
Sbjct: 245 DIGLGGRAGYYDGIG 259