NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920400
Clone id YMU001_000136_F07
Library
Length 401
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000136_F07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AAGAAAAGGCAGGGCCATTGGTTTCAGGCCTACGCTCTAGAGGAGCCTTCAGTTTTGTGT
TGCCTGAGCCTAGCATTGAGGTTCTTCTTGGGATTTATTATCTGAGCAGAGGTTGTTACA
AAGAAGAATCGGACTGCTTTGAGCCGTCATGGAACTCCAAAGATTTCTTACAACATTTTA
CACTTTATGGATACGATCTGGAAGCTCATATAGCTCAAGGTGAGAGAGCGGTAGAGGTGG
AGGACTATGCGGTTCGCCTTGAAAGAGGGTTAAATCATTATGGACGGTGGGACAGTTTAT
TGACGAGATTGGCAATCGATAATGGTGATTGCTCTAAAATAAGTAGTGAAGATCTTTTAC
TGTTTCAGAGAAGGCGTTATGTACAGCTTGATCCTCGGAAT
■■Homology search results ■■ -
sp_hit_id Q03QY6
Definition sp|Q03QY6|ATPA_LACBA ATP synthase subunit alpha OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170)
Align length 80
Score (bit) 30.4
E-value 2.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920400|Adiantum capillus-veneris mRNA, clone:
YMU001_000136_F07.
         (401 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q03QY6|ATPA_LACBA ATP synthase subunit alpha OS=Lactobacillus...    30   2.8  
sp|A5G460|ADD_GEOUR Adenosine deaminase OS=Geobacter uraniireduc...    30   3.7  
sp|Q8K9J0|PTGCB_BUCAP PTS system glucose-specific EIICB componen...    29   6.3  
sp|Q8YKE7|Y7351_ANASP Uncharacterized Nudix hydrolase all7351 OS...    29   8.3  
sp|Q8C0T5|SI1L1_MOUSE Signal-induced proliferation-associated 1-...    29   8.3  
sp|Q9PQV5|RPOC_UREPA DNA-directed RNA polymerase subunit beta' O...    29   8.3  
sp|B1AIH6|RPOC_UREP2 DNA-directed RNA polymerase subunit beta' O...    29   8.3  
sp|P57437|PTGCB_BUCAI PTS system glucose-specific EIICB componen...    29   8.3  
sp|P38649|BGAT_MOUSE Histo-blood group ABO system transferase OS...    29   8.3  

>sp|Q03QY6|ATPA_LACBA ATP synthase subunit alpha OS=Lactobacillus
           brevis (strain ATCC 367 / JCM 1170) GN=atpA PE=3 SV=1
          Length = 513

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
 Frame = +3

Query: 168 LQHFTLYGYDLEA----HIAQGERAVEVEDYAVRLERGLNH-YGRWDSLLTRLAIDNGDC 332
           L+ F  +G DL+A     +A+GER VEV      L++GL+        ++   A+ +G  
Sbjct: 392 LESFAQFGSDLDAATQARLARGERTVEV------LKQGLHESVPVAKEVIILFALTHGHL 445

Query: 333 SKISSEDLLLFQRRRYVQLD 392
            K+   D+L +Q   +  +D
Sbjct: 446 DKLEVADVLRYQNELFDYMD 465


>sp|A5G460|ADD_GEOUR Adenosine deaminase OS=Geobacter uraniireducens
           (strain Rf4) GN=add PE=3 SV=1
          Length = 355

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
 Frame = +3

Query: 15  PLVSGLRSRGAFSFVLPEPSIEVLLGIYYLSRGCYKEESDCFEPSW-----NSKDFLQHF 179
           P +  LR+  AF+       ++  L IYY      ++E+D F+ +W        + + H 
Sbjct: 50  PTIDELRAAYAFT------DLQSFLDIYYAGASVLQKEADFFDMAWAYLKRAKAENVVHA 103

Query: 180 TLYGYDLEAHIAQG---ERAVEVEDYAVRLERGLNHYGRWDSLL 302
            ++ +D + H A+G   E  +   D A+R  RG    G   SL+
Sbjct: 104 EIF-FDPQTHTARGIPFETVINGLDRAIR--RGREELGLSASLI 144


>sp|Q8K9J0|PTGCB_BUCAP PTS system glucose-specific EIICB component
           OS=Buchnera aphidicola subsp. Schizaphis graminum
           GN=ptsG PE=3 SV=1
          Length = 477

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 231 VEVEDYAVRLERGLNHYGRWDSLLTRLAIDNGDCSKISSEDL 356
           +E+  Y V    G N+    D+ +TRL I   + SK++ E+L
Sbjct: 399 IEIAPYIVEALGGKNNIKNLDACITRLRITVSEISKVNEENL 440


>sp|Q8YKE7|Y7351_ANASP Uncharacterized Nudix hydrolase all7351
           OS=Anabaena sp. (strain PCC 7120) GN=all7351 PE=3 SV=2
          Length = 169

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 138 FEPSWNSKDFLQHFTLYGYDLEAHIAQGERA 230
           +EP +N  DF++ F LY  +L   + +GE A
Sbjct: 125 YEPDYNQNDFIESFWLYPSELIEWLNKGEPA 155


>sp|Q8C0T5|SI1L1_MOUSE Signal-induced proliferation-associated 1-like
            protein 1 OS=Mus musculus GN=Sipa1l1 PE=1 SV=2
          Length = 1782

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 7/96 (7%)
 Frame = +3

Query: 51   SFVLPEPSIEVLLGIYYLSRGCYKEESDCFEPSWNSKDFLQHFT-------LYGYDLEAH 209
            SF+  E   E++  + ++S+GC   E            F  ++         YGY  +A 
Sbjct: 928  SFISGEDIKEIVRRLQFVSKGCESVEMTLRRNGLGQLGFHVNYEGIVADVEPYGYAWQAG 987

Query: 210  IAQGERAVEVEDYAVRLERGLNHYGRWDSLLTRLAI 317
            + QG R VE+   AV     L+H    D L T + +
Sbjct: 988  LRQGSRLVEICKVAVAT---LSHEQMIDLLRTSVTV 1020


>sp|Q9PQV5|RPOC_UREPA DNA-directed RNA polymerase subunit beta'
           OS=Ureaplasma parvum GN=rpoC PE=3 SV=1
          Length = 1305

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
 Frame = +3

Query: 69  PSIEVLLGIYYLSRGCYK---EESDCFEPSWNSKDFLQHFTLYGYDLEAHIAQGERAVEV 239
           P+ +++LGIYYL++  +    EE    +P+    +F+ +F ++    EA  A   + + +
Sbjct: 569 PTQDMILGIYYLTKEKFPQVIEEMMAKDPTQARVEFINNFHIFSTQDEAIRAYKLKTIRI 628

Query: 240 ED 245
            D
Sbjct: 629 ND 630


>sp|B1AIH6|RPOC_UREP2 DNA-directed RNA polymerase subunit beta'
           OS=Ureaplasma parvum serovar 3 (strain ATCC 27815 / 27 /
           NCTC 11736) GN=rpoC PE=3 SV=1
          Length = 1305

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
 Frame = +3

Query: 69  PSIEVLLGIYYLSRGCYK---EESDCFEPSWNSKDFLQHFTLYGYDLEAHIAQGERAVEV 239
           P+ +++LGIYYL++  +    EE    +P+    +F+ +F ++    EA  A   + + +
Sbjct: 569 PTQDMILGIYYLTKEKFPQVIEEMMAKDPTQARVEFINNFHIFSTQDEAIRAYKLKTIRI 628

Query: 240 ED 245
            D
Sbjct: 629 ND 630


>sp|P57437|PTGCB_BUCAI PTS system glucose-specific EIICB component
           OS=Buchnera aphidicola subsp. Acyrthosiphon pisum
           GN=ptsG PE=3 SV=1
          Length = 477

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 234 EVEDYAVRLERGLNHYGRWDSLLTRLAIDNGDCSKISSEDL 356
           E+  Y +    G N+    D+ +TRL I   D SK+  +DL
Sbjct: 400 EIAPYIITALGGKNNIKNLDACITRLRITVSDISKVKQKDL 440


>sp|P38649|BGAT_MOUSE Histo-blood group ABO system transferase
           OS=Mus musculus GN=Abo PE=1 SV=2
          Length = 332

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 10/39 (25%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
 Frame = +3

Query: 84  LLGIYYLSRGCYK----EESDCFEPSWNSKDFLQHFTLY 188
           +L +Y+L++ C++    ++++  EP W+ + +L  + LY
Sbjct: 253 VLEVYHLTKACHEAMMEDKANGIEPVWHDESYLNKYLLY 291
tr_hit_id Q22MI1
Definition tr|Q22MI1|Q22MI1_TETTH ABC transporter family protein OS=Tetrahymena thermophila SB210
Align length 90
Score (bit) 39.3
E-value 0.098
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920400|Adiantum capillus-veneris mRNA, clone:
YMU001_000136_F07.
         (401 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q22MI1|Q22MI1_TETTH ABC transporter family protein OS=Tetrahy...    39   0.098
tr|A4FZY9|A4FZY9_METM5 Tetratricopeptide TPR_2 repeat protein OS...    35   1.8  
tr|B8M7P6|B8M7P6_9EURO Alpha-aminoadipate reductase Lys2, putati...    33   5.4  
tr|B6JYA3|B6JYA3_SCHJP Putative uncharacterized protein OS=Schiz...    33   9.1  
tr|A4QZA7|A4QZA7_MAGGR Predicted protein OS=Magnaporthe grisea G...    33   9.1  

>tr|Q22MI1|Q22MI1_TETTH ABC transporter family protein
           OS=Tetrahymena thermophila SB210 GN=TTHERM_00035390 PE=3
           SV=1
          Length = 1256

 Score = 39.3 bits (90), Expect = 0.098
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
 Frame = +3

Query: 96  YYLSRGCYKEESDCFEPSWNSKDFLQHFTLYGYDLEAHIAQGERAVEVEDYAVRLERGLN 275
           +YL  G +K  SD   P WNS  + Q+ T Y Y  EA +       E   + + +   LN
Sbjct: 513 FYLFGGLFKNISDF--PEWNS--WFQYLTSYRYSFEALVHNN---YEGSPFTIDVSEQLN 565

Query: 276 H-YGRWDSLLTRLAIDNGDCSKISSEDLLL 362
              G+W+SL+  L+     CS  +++   L
Sbjct: 566 FTLGKWNSLVCNLSSGQQSCSAATTQQTCL 595


>tr|A4FZY9|A4FZY9_METM5 Tetratricopeptide TPR_2 repeat protein
           OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333)
           GN=MmarC5_1476 PE=3 SV=1
          Length = 226

 Score = 35.0 bits (79), Expect = 1.8
 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
 Frame = +3

Query: 90  GIYYLSRGCYKEESDCFEPSWNSKDFLQHFTLYGYDLEAHIAQGERAVEVEDYAVRLERG 269
           G Y+ +RG Y+    C+E +  +     +  ++   +   + Q E AVE  D A+ L+  
Sbjct: 89  GTYFYNRGQYENAIACYEEALKADPNYTYAVVFKGVVFISLKQYEDAVECSDKALELDP- 147

Query: 270 LNHYGRWDSLLTRLAIDN-GDCSKISSEDLLLF 365
            NH   W      LA  N  +C +  SE L L+
Sbjct: 148 -NHVSLWLCKAGALANSNPNECIEYCSEALKLY 179


>tr|B8M7P6|B8M7P6_9EURO Alpha-aminoadipate reductase Lys2, putative
           OS=Talaromyces stipitatus ATCC 10500 GN=TSTA_028810 PE=4
           SV=1
          Length = 1102

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +3

Query: 207 HIAQGERAVEVEDYAVRLERGLNHYGRW-DSLLTRLAIDNGDCSK 338
           HI    RA + E    RLER L  YG W DS  +R+    GD SK
Sbjct: 779 HIIAHVRAKDAESGMARLERSLKGYGLWQDSWKSRITCVAGDLSK 823


>tr|B6JYA3|B6JYA3_SCHJP Putative uncharacterized protein
           OS=Schizosaccharomyces japonicus yFS275 GN=SJAG_01564
           PE=4 SV=1
          Length = 2668

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +3

Query: 120 KEESDCFEPSWNSKDFLQHFTLYGYDLEAHIAQGE 224
           K++SDCF P W     LQHF LYG   +  +   E
Sbjct: 604 KKQSDCFLPQW-----LQHFKLYGSGFDMSVCDYE 633


>tr|A4QZA7|A4QZA7_MAGGR Predicted protein OS=Magnaporthe grisea
            GN=MGG_07905 PE=4 SV=1
          Length = 1973

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
 Frame = +3

Query: 60   LPEPSIEVLLGIYYLSRGC----YKEESDCFEPS-WNSKDFLQHFTLYGYDLEAHIAQGE 224
            +P+P   V L   YL +G       +E+  FE S W   D +Q +TL+  D++AHI   E
Sbjct: 1551 IPDPWAAVKLLQKYLGKGTPSTTKSDETPIFEESSWTVSDGIQGWTLFREDIDAHIGSLE 1610

Query: 225  RA 230
             A
Sbjct: 1611 VA 1612